EWM25009.1, cds5651 (CDS) Nannochloropsis gaditana

Overview
NameEWM25009.1
Unique Namecds5651
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:529806..530539 -
Alignment locationCM002466.1:529640..529682 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25009.1
ProductDNA-binding SAP
Orig transcript idgnl|cribi|Naga_100068g1.2433.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:529806..530539 -
CM002466.1supercontigCM002466.1:529640..529682 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR003034SAP_dom
Homology
BLAST of EWM25009.1 vs. NCBI_GenBank
Match: gi|585106644|gb|EWM25009.1| (DNA-binding SAP [Nannochloropsis gaditana])

HSP 1 Score: 497.278 bits (1279), Expect = 1.537e-177
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0
Query:    1 MDLDLKKLKVDQLREELSKRGLDTKGKKDELQERLQNAIDTEMLDAIDEEDDVGAPPPAALPPLSAAPPALAPAPVPASHTKTAPSPQPRAPFHENSAASETAASTAPTSAPASMPTPAAVTGTTAPASQDKTEETEEEKKRRRAERFGIPLSEEAKKKARAERFGVVKPANATASNLLKGAIESKGTSKAGPLQGVPVVDAAEEARRRARAARFGIPDPKLEEEKKAERARRFADPAKLEEEAKKKARMERFGATTS 258
            MDLDLKKLKVDQLREELSKRGLDTKGKKDELQERLQNAIDTEMLDAIDEEDDVGAPPPAALPPLSAAPPALAPAPVPASHTKTAPSPQPRAPFHENSAASETAASTAPTSAPASMPTPAAVTGTTAPASQDKTEETEEEKKRRRAERFGIPLSEEAKKKARAERFGVVKPANATASNLLKGAIESKGTSKAGPLQGVPVVDAAEEARRRARAARFGIPDPKLEEEKKAERARRFADPAKLEEEAKKKARMERFGATTS
Sbjct:    1 MDLDLKKLKVDQLREELSKRGLDTKGKKDELQERLQNAIDTEMLDAIDEEDDVGAPPPAALPPLSAAPPALAPAPVPASHTKTAPSPQPRAPFHENSAASETAASTAPTSAPASMPTPAAVTGTTAPASQDKTEETEEEKKRRRAERFGIPLSEEAKKKARAERFGVVKPANATASNLLKGAIESKGTSKAGPLQGVPVVDAAEEARRRARAARFGIPDPKLEEEKKAERARRFADPAKLEEEAKKKARMERFGATTS 258          
BLAST of EWM25009.1 vs. NCBI_GenBank
Match: gi|673022850|ref|XP_008865386.1| (hypothetical protein H310_03347 [Aphanomyces invadans] >gi|574478614|gb|ETW05609.1| hypothetical protein H310_03347 [Aphanomyces invadans])

HSP 1 Score: 101.293 bits (251), Expect = 6.022e-22
Identity = 95/281 (33.81%), Postives = 134/281 (47.69%), Query Frame = 0
Query:    3 LDLKKLKVDQLREELSKRGLDTKGKKDELQERLQNAIDTEMLDAIDEEDDVGAPPPAALPPLSAAPPALAPA--PVPASHTKTAPSPQPRAPFHEN------SAASETAASTAPTSAPASMPTPAAVTGTTAPASQDKTEETEEEKKRRRAERFGIPLSEEAKKKARAERFGVVKPANATASNLLKGAIESKGTSKAGPLQGVPVVDAAEEARRRARAARFGIP---DPKLEEEKKAERARRFADPAKLEE----------------EAKKKARMERFGAT 256
            L+ KK+KV+++++EL+KRGL   G K EL +RL+ A+D E    +D  +        A+     AP  +      + +      PS +P A           SA S  A +  PT     +  P+A      P +      +EEEKKRRRAE+FGIPLSEE K   RA+RF +    +   S LL             P  GV V    ++A+++ RA RFG+P   D  + EEKKA RA RF   A+ E+                +AKKK R+ERFG +
Sbjct:    4 LNPKKMKVNEIKDELAKRGLSQTGLKPELIQRLELALDEEEFGGLDVPESSPVSTAVAVVENEVAPTVVMKKTDSIRSLLNDDTPSAEPAATALAKAAVGKPSATSTVAPTAKPTVKKTDVSPPSATIVANTPKAI-----SEEEKKRRRAEKFGIPLSEEQKILERAKRFQLPSMKSDDFSALLTD----------NP--GVHVDKVLDDAKKQDRAKRFGLPVALDASMLEEKKAARASRFGMNAEAEKKLKRAMRFNLETPETVDAKKKQRLERFGLS 267          
BLAST of EWM25009.1 vs. NCBI_GenBank
Match: gi|698781331|ref|XP_009823709.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574121433|gb|ETV86910.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 97.0561 bits (240), Expect = 1.784e-20
Identity = 100/281 (35.59%), Postives = 132/281 (46.98%), Query Frame = 0
Query:    3 LDLKKLKVDQLREELSKRGLDTKGKKDELQERLQNAIDTEMLDAIDEEDDVGAPPPAAL------------------------PPLSAAPPALAPAPVPASHTKTAPSPQPRAPFHENSAASETAASTAPTSAPASMPTPAAVTGTTAPASQDKTEETEEEKKRRRAERFGIPLSEEAKKKARAERFGVVKPANATASNLLKGAIESKGTSKAGPLQGVPV-VDAAE-EARRRARAARFGIPDPKLEEEKKAERARRFADPAKLEEEAKKKARMERFGATT 257
            L+ KK+KV+++++EL+KRGL   G K EL +RL+ A+D E    +D  D    P  AA+                           S   P +A    P +     PS    A    N          APT  PA  P  A+V   T  A       +EEEKKR RAE+FGIPLSEE K   RA+RF +            K A +SK   +A    G+PV VDA + E ++ ARA RFG+     E++KK +RA RF        +AKKK R ERFG +T
Sbjct:    4 LNPKKMKVNEIKDELAKRGLSQAGLKPELIQRLELALDEEEFGGMDGPD--STPVSAAVEVEKVAAPAPVAKKADSIRNLLNDDSSSVQSPVVAAVSAPVNVAVVEPSTTTTATSASN---------VAPTEVPA--PVIASVVDNTPKAI------SEEEKKRLRAEKFGIPLSEEQKILERAKRFQLPN----------KHADDSKKQDRAKRF-GLPVAVDAGQLEEKKAARANRFGL---NAEDDKKLKRAMRFNMETSETIDAKKKQRSERFGLST 251          
BLAST of EWM25009.1 vs. NCBI_GenBank
Match: gi|673022852|ref|XP_008865387.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574478615|gb|ETW05610.1| hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 95.5153 bits (236), Expect = 6.278e-20
Identity = 93/264 (35.23%), Postives = 133/264 (50.38%), Query Frame = 0
Query:    3 LDLKKLKVDQLREELSKRGLDTKGKKDELQERLQNAIDTEMLDAIDEEDDVGAPPPAALPPLSAAPPALAPA--PVPASHTKTAPSPQPRAPFHEN------SAASETAASTAPTSAPASMPTPAAVTGTTAPASQDKTEETEEEKKRRRAERFGIPLSEEAKKKARAERFGVVKPANATASNLLKGAIESKGTSKAGPLQGVPV-VDAAE-EARRRARAARFGIPDPKLEEEKKAERARRFADPAKLEEEAKKKARMERFGAT 256
            L+ KK+KV+++++EL+KRGL   G K EL +RL+ A+D E    +D  +        A+     AP  +      + +      PS +P A           SA S  A +  PT     +  P+A      P +      +EEEKKRRRAE+FGIPLSEE K   RA+RF +        + +L  A   K   +A    G+PV +DA+  E ++ ARA+RFG+     E EKK +RA RF        +AKKK R+ERFG +
Sbjct:    4 LNPKKMKVNEIKDELAKRGLSQTGLKPELIQRLELALDEEEFGGLDVPESSPVSTAVAVVENEVAPTVVMKKTDSIRSLLNDDTPSAEPAATALAKAAVGKPSATSTVAPTAKPTVKKTDVSPPSATIVANTPKAI-----SEEEKKRRRAEKFGIPLSEEQKILERAKRFQL-------PNKVLDDA---KKQDRAKRF-GLPVALDASMLEEKKAARASRFGM---NAEAEKKLKRAMRFNLETPETVDAKKKQRLERFGLS 248          
BLAST of EWM25009.1 vs. NCBI_GenBank
Match: gi|698781329|ref|XP_009823708.1| (hypothetical protein H257_01941 [Aphanomyces astaci] >gi|574121432|gb|ETV86909.1| hypothetical protein H257_01941 [Aphanomyces astaci])

HSP 1 Score: 95.5153 bits (236), Expect = 1.010e-19
Identity = 105/295 (35.59%), Postives = 139/295 (47.12%), Query Frame = 0
Query:    3 LDLKKLKVDQLREELSKRGLDTKGKKDELQERLQNAIDTEMLDAIDEEDDVGAPPPAAL------------------------PPLSAAPPALAPAPVPASHTKTAPSPQPRAPFHENSAASETAASTAPTSAPASMPTPAAVTGTTAPASQDKTEETEEEKKRRRAERFGIPLSEEAKKKARAERFGVVKPANAT-----ASNLL---------KGAIESKGTSKAGPLQGVPV-VDAAE-EARRRARAARFGIPDPKLEEEKKAERARRFADPAKLEEEAKKKARMERFGATT 257
            L+ KK+KV+++++EL+KRGL   G K EL +RL+ A+D E    +D  D    P  AA+                           S   P +A    P +     PS    A    N          APT  PA  P  A+V   T  A       +EEEKKR RAE+FGIPLSEE K   RA+RF +  P+  T     A+ LL         K A +SK   +A    G+PV VDA + E ++ ARA RFG+     E++KK +RA RF        +AKKK R ERFG +T
Sbjct:    4 LNPKKMKVNEIKDELAKRGLSQAGLKPELIQRLELALDEEEFGGMDGPD--STPVSAAVEVEKVAAPAPVAKKADSIRNLLNDDSSSVQSPVVAAVSAPVNVAVVEPSTTTTATSASN---------VAPTEVPA--PVIASVVDNTPKAI------SEEEKKRLRAEKFGIPLSEEQKILERAKRFQL--PSMRTDDDDAAAPLLTDKSVVHVDKHADDSKKQDRAKRF-GLPVAVDAGQLEEKKAARANRFGL---NAEDDKKLKRAMRFNMETSETIDAKKKQRSERFGLST 273          
BLAST of EWM25009.1 vs. NCBI_GenBank
Match: gi|1173953932|gb|OQS01438.1| (hypothetical protein ACHHYP_00745 [Achlya hypogyna])

HSP 1 Score: 93.2041 bits (230), Expect = 2.486e-19
Identity = 91/263 (34.60%), Postives = 128/263 (48.67%), Query Frame = 0
Query:    3 LDLKKLKVDQLREELSKRGLDTKGKKDELQERLQNAIDTEMLDAIDEEDDVGAPPPAALPPLSAAP-PALAPAPVPASHTKTA-----------PSPQPRAPFHENSAASETAASTAPTSAPASMPTPAAVTGTTAPASQDKTEETEEEKKRRRAERFGIPLSEEAKKKARAERFGVVKPANATASNLLKGAIESKGTSKAGPLQGVPVVDAAEEARRRARAARFGIPDPKLEEEKKAERARRFADPAKLEEEAKKKARMERF 253
            L+ KK+KV ++++EL+KRGL T G K EL +RL+ A+D       +EE    A   A+     A+P P     PV AS                P P+P+              ++ PT   A++P  AA+              TEEEK++ RA +FGIPL++E KK  RA+RF V  P  ATA +     +E +  SK     GV   D  +E +++AR  RFGI D   + +KK ERA RF    K   + K + R ERF
Sbjct:    4 LNPKKMKVAEIKDELTKRGLSTAGVKAELTQRLELALD-------EEEFGAEAHDQASFGAAEASPEPETTTTPVAASPEPEPEAAKAAEVAEDPVPEPK-------------TTSTPTKPVAAVPVTAAM--------------TEEEKRKARAAKFGIPLTDEQKKSERAKRFQV--PGAATAVD---NYVELQKKSKRAERFGVETEDKMQE-KKKARGERFGITD---DAKKKLERALRFNLMTKEVVDEKLQQRRERF 223          
BLAST of EWM25009.1 vs. NCBI_GenBank
Match: gi|971511493|dbj|GAQ86729.1| (hypothetical protein KFL_003070170 [Klebsormidium nitens])

HSP 1 Score: 89.7373 bits (221), Expect = 5.538e-18
Identity = 102/271 (37.64%), Postives = 131/271 (48.34%), Query Frame = 0
Query:    4 DLKKLKVDQLREELSKRGLDTKGKKDELQERLQNAIDTEMLDAIDEEDDVGAPPPAALPPLSAAPPALAPAPVPASHTKTAPSPQPRAPFHENSAASETAASTAPTSAPASMPTPAAVTGTTAPASQDKTEETEEEKKRRRAERFGIP--LSEEAKKKARAERFGVVKPANATASNLLKGAIESKGTSKAGPLQGVPVVDAAEE--ARRRARAARFGIP------------DPKLEEEKKAERARRFADPAKLEEEAKKKARMERFGATTS 258
            D KKLKV +L++EL+KRGL   G K  L ERL+ A      D   E D V     A  PP                 +K +  P P        A +  AAS    +   S+ TPAA     A      T  +  +KK++RAERFG+P  LS+E K K RAERFG+ K   A  +    GA  + G +K+ P         +EE  A+++ARA RFGIP            DP  +E+KK +RA RFA     E+E KKKAR ERF AT S
Sbjct:    5 DYKKLKVQELKDELAKRGLAVDGLKAMLVERLEAA------DKESESDKVAQGGSAEAPP-----------------SKQSSDPMP--------ATTNQAASEGGQAEGLSLETPAA---KAAAPGPAATAPSAIDKKKQRAERFGVPVALSDEEKLKLRAERFGIQKAGGAN-TGKADGAKGANGVAKSAP---------SEEDIAKKKARAERFGIPVAAENGASKGTADPDADEKKK-KRAERFAS----EDEQKKKARAERF-ATAS 225          
BLAST of EWM25009.1 vs. NCBI_GenBank
Match: gi|813111649|ref|XP_012195223.1| (hypothetical protein SPRG_19024 [Saprolegnia parasitica CBS 223.65] >gi|641540392|gb|KDO34174.1| hypothetical protein SPRG_19024 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 87.4261 bits (215), Expect = 3.918e-17
Identity = 90/258 (34.88%), Postives = 122/258 (47.29%), Query Frame = 0
Query:    6 KKLKVDQLREELSKRGLDTKGKKDELQERLQNAIDTEMLDAIDEEDDVGAPPPAALPPLSAAP-PALAPAPV--PASHTKTAPSPQPRA-----PFHENSAASETAASTAPTSAPASMPTPAAVTGTTAPASQDKTEETEEEKKRRRAERFGIPLSEEAKKKARAERFGVVKPANATASNLLKGAIESKGTSKAGPLQGVPVVDAAEEARRRARAARFGIPDPKLEEEKKAERARRFADPAKLEEEAKKKARMERFGA 255
            KK+KV ++++EL+KR L T G K EL +RL+ A+D       +EE    A   A L    A+P  ++ P PV  PA     A SP   A     P  E               AP+S+P  AA   T           +EEEK++ RA +FGIPL+E+ +K  RA+RF      +AT        +E+   SK     GV   D    A+++AR  RFGI D   + +KK ERA RF    K   + K K R  RF A
Sbjct:    7 KKMKVAEIKDELAKRSLSTAGVKAELVQRLELALD-------EEEFGSEAHEQATLAAAEASPIESVTPEPVEEPAQEVAKAASPAKHAEPVPEPIKE---------------APSSVPVVAAAPATVGM--------SEEEKRKARAAKFGIPLTEDQRKMERAQRFKAAGAVDAT--------VETAKKSKRAERFGVETDDKV-HAQKKARGERFGITD---DSKKKLERALRFNLVTKEVVDEKLKQRQARFAA 222          
BLAST of EWM25009.1 vs. NCBI_GenBank
Match: gi|669152994|ref|XP_008612059.1| (hypothetical protein SDRG_07973 [Saprolegnia diclina VS20] >gi|530736411|gb|EQC34653.1| hypothetical protein SDRG_07973 [Saprolegnia diclina VS20])

HSP 1 Score: 86.6557 bits (213), Expect = 6.640e-17
Identity = 84/250 (33.60%), Postives = 120/250 (48.00%), Query Frame = 0
Query:    6 KKLKVDQLREELSKRGLDTKGKKDELQERLQNAIDTEMLDAIDEEDDVGAPPPAALPPLSAAPPALAPAPVPASHTKTAPSPQPRAPFHENSAASETAASTAPTSAPASMPTPAAVTGTTAPASQDKTEETEEEKKRRRAERFGIPLSEEAKKKARAERFGVVKPANATASNLLKGAIESKGTSKAGPLQGVPVVDAAEEARRRARAARFGIPDPKLEEEKKAERARRFADPAKLEEEAKKKARMERFGA 255
            KK+KV ++++EL+KRGL T G K EL +RL+ A+D E   +   E    A   A+  P+ +A P   P   PA       SP    P H          +    +AP ++                    TEEEK++ RA +FGIPL+E+ +K  RA+RF  +K A A     +   +E+   SK     G+   D   +A+++AR  RFGI D   + +KK ERA RF    K   + K K R ERF A
Sbjct:    7 KKMKVAEIKDELAKRGLSTVGVKAELVQRLELALDEEEFGSEAHEQATLAAAEAS--PIGSATPE--PVEEPAQEAPKEASP----PKHAEPVPELVKDAPVVAAAPVTVGM------------------TEEEKRKARAAKFGIPLTEDQRKMERAQRFNALKAAGA-----VDATVETVKKSKRAERFGIESDDKV-QAQKKARGERFGITD---DSKKKLERALRFNLVTKEVVDEKLKQRQERFAA 221          
BLAST of EWM25009.1 vs. NCBI_GenBank
Match: gi|633912689|gb|KDD76503.1| (hypothetical protein H632_c202p0 [Helicosporidium sp. ATCC 50920])

HSP 1 Score: 80.8777 bits (198), Expect = 9.924e-15
Identity = 88/257 (34.24%), Postives = 116/257 (45.14%), Query Frame = 0
Query:    4 DLKKLKVDQLREELSKRGLDTKGKKDELQERLQNAIDTEMLDAIDEEDDVGAPPPAALPPLSAAPPALAPAPVPASHTKTAPSPQPRAPFHENSAASETAASTAPTSAPASMPTPAAVTGTTAPASQDKTEETEEEKKRRRAERFGIPLSEEAKKKARAERFGVVKPANATASNLLKGAI---ESKGTSKAGPLQGVPVVDAAEE--ARRRARAARFGIPDPKLEEEKKAERARRFADPAKLEEEAKKKARMERFGA 255
            DLKKLKV +LR+EL+KR L+TKG KDEL  RL  ++  E  DA         P P   P   A+PPA                                AAST     PA  P  AAV    AP      + +E +K + RAERFG+P++E AK K          PA +++   L  A    E +   K     G+PV    EE  A+++ RAA+FG+P P  +E                EEEAK+++R  RFGA
Sbjct:    6 DLKKLKVAELRDELTKRDLETKGVKDELIARLWESMSAEQPDA-------STPAPENAPDPVASPPA-----------------------------EHLAASTTEADVPA--PAKAAVEAIPAPP----VKLSEADKSKLRAERFGLPVAEGAKDK----------PAASSSVGSLGKAETQEEMERRKKRAERFGMPVPMTKEEEWAKKKQRAAKFGLPAPVFKE----------------EEEAKRQSRQNRFGA 194          
The following BLAST results are available for this feature:
BLAST of EWM25009.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106644|gb|EWM25009.1|1.537e-177100.00DNA-binding SAP [Nannochloropsis gaditana][more]
gi|673022850|ref|XP_008865386.1|6.022e-2233.81hypothetical protein H310_03347 [Aphanomyces invad... [more]
gi|698781331|ref|XP_009823709.1|1.784e-2035.59hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|673022852|ref|XP_008865387.1|6.278e-2035.23hypothetical protein, variant [Aphanomyces invadan... [more]
gi|698781329|ref|XP_009823708.1|1.010e-1935.59hypothetical protein H257_01941 [Aphanomyces astac... [more]
gi|1173953932|gb|OQS01438.1|2.486e-1934.60hypothetical protein ACHHYP_00745 [Achlya hypogyna... [more]
gi|971511493|dbj|GAQ86729.1|5.538e-1837.64hypothetical protein KFL_003070170 [Klebsormidium ... [more]
gi|813111649|ref|XP_012195223.1|3.918e-1734.88hypothetical protein SPRG_19024 [Saprolegnia paras... [more]
gi|669152994|ref|XP_008612059.1|6.640e-1733.60hypothetical protein SDRG_07973 [Saprolegnia dicli... [more]
gi|633912689|gb|KDD76503.1|9.924e-1534.24hypothetical protein H632_c202p0 [Helicosporidium ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5666rna5666Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications