rna5666, rna5666 (mRNA) Nannochloropsis gaditana

Overview
Namerna5666
Unique Namerna5666
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1745
Alignment locationCM002466.1:529319..530982 -

Link to JBrowse

Properties
Property NameValue
ProductDNA-binding SAP
Orig transcript idgnl|cribi|Naga_100068g1.2433.mrna
Orig protein idgnl|cribi|Naga_100068g1.2433
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:529319..530982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100068g1gene5474Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5666rna5666-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25009.1cds5651Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5666 ID=rna5666|Name=rna5666|organism=Nannochloropsis gaditana|type=mRNA|length=1745bp
AATCAAGGCGATTCAAGCCACACATTTACATAGCGTGCGACCCCAAAGAC
ACTTGTCTGTGACTTTGTGGGCATTGACCAGTGTGTTTGATGTCAAACAG
GAAAGGGTGGATCGGGGTTGGACAGTGTCGGCATCGGCCGGGCATCTGGG
GGCTTGCCCCCCCTGGAGATCTTGGGCCACACGCACGTTGGTTTGCTTCA
TTCGTGCGGTGACGAAGGCAGGAGGATTGCTCAAGTAACCTGCGTTTCGA
GTTGTTGATGGTCTGGGTGCGACGACTGCCCATGTGTATCGGCGGTGGCC
TGGACTGCTATGAAGCAAGGACGTGGATGCTGGCTTGGGTCGCCCACGTC
GACCCCCACCCCGATCTAGTCTCACCGACCCCTCTCCGTGTAGACAGACC
CGCACATGCCCACCAAAGCCACAAACTCATACAAACGACAGCTATAACTG
ACATACATATCCGTCTTGTTCGTCCTGTCCGGACCTTCAAGATGGCTGTG
ATGTTTTCCGGCTTCTTCAGCTTTAGTCAACATTCTCTTCCCCCCCTCCC
TTCCCTTTTCGTTCAAAACAGAACTCCCCTCCAATTTAAGACATTCCCAG
ACCATGAAGTGCTCATTACTTCTTGCCCTGGTGGCTCCGACCATGGCATT
CATCCCGATGAAGCCTGTTGTACCTATGGCAAAAGCCCAAGCTCGCGTGA
AAGGGCAAACGCGTATGCAGGCGGACATGCCCGGCCTTGCCTCCGCTCCT
GGCCAGCCCACCATCGAAAGCTGGTTGCTCGACAATTCCGAGAAGAAACT
ATCCAAGGCTGTCTTGGGCCTCTTCAGCGCTTGCAAGGAGATCGCATACA
AAATCCGCACCGCCTCTTGTGACAAAATGGCCTGCTTCAACGAGTTTGGG
GACGAGCAGCTCGCCATCGACATCCTGGCCAACAACGTCTTGTTCCAGAA
CTTGAAGGACTCCGGCGTGGTCGCCACGGCCTCCTCCGAGGAGACCCCGA
CTGAGGACCCGATGGGCGGCGAGGGCTACTCGGTGGCCTTCGACCCTCTG
GACGGCTCCTCCATCATCGACACGAACTTCGCGGTGGGCACCATCTTCGG
GGTCTGGCCCGGCTCCCGCCTGACCGGGATCACAGGCCGAGAGCTGGCTG
CCTCCGGGATCGCCGTGTATGGGCCACGTACGACCATCACCTTTGCCATT
GACGGTGTGGAGGGCGCGCACGAGTTCTTGCTCGTGGACGACTTCACGGC
CCGCCACGGCCAGTGGATCAAGACCAACACCTTCACGAGCATCGGCGAAG
GGAAGCTGTACGCCCCGGGCAACCTGCGCGCGACCAACGACAACCCCGGC
TACGATGCTCTGCACAAGTACTGGCTACAGAACAAATACCAGCTCCGGTA
CACGGGCGGCATGGTGCCGGACGTGAACCAGATCATGGTCAAGGGCAAGG
GTGTCTTCGTCAACCCCGAGTCCCCTTCCGCCAAGGCCAAGCTCCGCCTC
CTCTACGAGGTGGCGCCCATTGGGTACGTGATCGAGAAGGCCGGCGGTGC
GTCCTCGTACGGGGCCGGCTCTGTCCTCGACCTGAAGGTGTACAAGACCG
AGGACCGCACTCAAGTCGCGTACGGGAGCAAGGACGAGGTCAAGCGTTTC
GAAGAGATGGTGGGAACCAAGTTTGCCACTGCCCACCCGGACACTGCCGC
CAAGAATGCCGCGCATGCCTAGACAGACAGTGGGAGATGAGGGAG
back to top

protein sequence of rna5666

>rna5666-protein ID=rna5666-protein|Name=rna5666|organism=Nannochloropsis gaditana|type=polypeptide|length=258bp
MDLDLKKLKVDQLREELSKRGLDTKGKKDELQERLQNAIDTEMLDAIDEE
DDVGAPPPAALPPLSAAPPALAPAPVPASHTKTAPSPQPRAPFHENSAAS
ETAASTAPTSAPASMPTPAAVTGTTAPASQDKTEETEEEKKRRRAERFGI
PLSEEAKKKARAERFGVVKPANATASNLLKGAIESKGTSKAGPLQGVPVV
DAAEEARRRARAARFGIPDPKLEEEKKAERARRFADPAKLEEEAKKKARM
ERFGATTS
back to top

mRNA from alignment at CM002466.1:529319..530982-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5666 ID=rna5666|Name=rna5666|organism=Nannochloropsis gaditana|type=mRNA|length=1664bp|location=Sequence derived from alignment at CM002466.1:529319..530982- (Nannochloropsis gaditana)
CTAAGACGTTGTCCTGCCTCCGGGCTGCTTGACGCCAAGGAAAAGGCTGC
AGCGTGCCCTGTTTGTGGTTCATTGATGGAAAATGCACGCTTGAGATACC
AAAGCAATATGGCTGGCGGGTTGGTCCGGTGTCGGGGAGGATTGGATCAA
AATTAAGTATTGCTGCCTGTTTAACTCTGTTGCTTCTTTCCCTCCTTGGC
GAGAAGACGCTAGCGTTGGAAGCACCCCCGTAAAAACGGTATTATAAAAC
ATGCACAGCAAGTCAAACTGCCTGGCACATTTGATCACGTAAAGTGACGC
TAAGCTGTAGACATAAAAGTTCTTCCGCCACGACGTATATTCTCTTATTT
TTCCTTTTATCCAGGCATCGCACAAGAAATACGACAACAGGGTCGGCAGC
ATTTCCAGTGAAAGGGCCGGTACCGCATACATATCGCATCAAAATGGACT
TGGACTTGAAGAAGCTGAAGGTCGACCAGCTCCGTGAGGAACTGAGCAAG
CGTGGGCTCGACACAAAGGGCAAAAAGGATGAGCTGCAAGAGCGTCTTCA
GAATGCAATCGATACAGAAATGTTAGACGCCATCGACGAAGAAGACGATG
TAGGCGCACCTCCTCCCGCTGCCCTCCCTCCTTTATCGGCAGCCCCCCCC
GCGCTGGCACCAGCACCAGTGCCCGCATCCCACACAAAGACTGCACCGTC
CCCTCAGCCACGCGCTCCATTCCACGAGAACAGTGCCGCATCCGAGACGG
CCGCGTCAACCGCCCCTACATCTGCTCCTGCTTCCATGCCTACGCCAGCC
GCAGTGACGGGGACGACTGCTCCTGCGAGCCAGGACAAGACGGAAGAGAC
AGAGGAAGAAAAGAAGCGACGACGTGCAGAGCGCTTCGGCATTCCGCTGT
CAGAAGAGGCCAAGAAGAAGGCCCGGGCAGAACGCTTCGGAGTGGTTAAA
CCAGCCAATGCGACAGCTTCCAATCTGTTAAAAGGTGCGATCGAAAGCAA
GGGTACCTCGAAAGCGGGACCTTTGCAAGGCGTTCCCGTGGTGGATGCTG
CGGAAGAGGCCCGGCGACGCGCGCGCGCGGCACGCTTTGGCATCCCTGAT
CCAAAGCTGGAGGAAGAAAAGAAAGCAGAGCGCGCGCGGCGATTTGCGGA
CCCGGCGAAATTGGAAGAAGAAGCCAAGTAAGTCTGAGAGCAAGGAGGTC
CGGGAGAGAGCGAGGTAAAAACGTGTCGACCGACGGAACTATGTGGTTTT
GGGGGCCCAGCTGCGCACGTGGGGACTCACTGTTTTGGTTTCGAACACAG
GAAGAAAGCACGGATGGAGCGATTTGGAGCAACCACGTCGTGATGGGCTG
ATTGCTGGATGTGCTCAGCTCAAAGGTGTCAAGCGTGGGGTATGACGTGC
AAAAGGAGAAAACAGGGGATCTAACGAATGCAGCGCGATGCTCCCAAACT
GGCGGAGCGAGACTGGTGACTATAAGGTGTTCCTGTATGTACGCATAAAG
GTTTGCGGTCCATTCAAGAAAAACGGTCCTCAGTATTCCGGAAGGTTTAA
AGCGAGAGGGATCATTGAAATCGAATGAAGAGCAATGTCAGAACTAAAGC
ATGACCTGAGCACAGCTTCCGCATATTTAAATTCGCAAAGAAGATGACAA
TCGGAGCCAGAGAT
back to top

Coding sequence (CDS) from alignment at CM002466.1:529319..530982-

>rna5666 ID=rna5666|Name=rna5666|organism=Nannochloropsis gaditana|type=CDS|length=1554bp|location=Sequence derived from alignment at CM002466.1:529319..530982- (Nannochloropsis gaditana)
GAAGAAAGCACGGATGGAGCGATTTGGAGCAACCACGTCGTGAATGGACT
TGGACTTGAAGAAGCTGAAGGTCGACCAGCTCCGTGAGGAACTGAGCAAG
CGTGGGCTCGACACAAAGGGCAAAAAGGATGAGCTGCAAGAGCGTCTTCA
GAATGCAATCGATACAGAAATGTTAGACGCCATCGACGAAGAAGACGATG
TAGGCGCACCTCCTCCCGCTGCCCTCCCTCCTTTATCGGCAGCCCCCCCC
GCGCTGGCACCAGCACCAGTGCCCGCATCCCACACAAAGACTGCACCGTC
CCCTCAGCCACGCGCTCCATTCCACGAGAACAGTGCCGCATCCGAGACGG
CCGCGTCAACCGCCCCTACATCTGCTCCTGCTTCCATGCCTACGCCAGCC
GCAGTGACGGGGACGACTGCTCCTGCGAGCCAGGACAAGACGGAAGAGAC
AGAGGAAGAAAAGAAGCGACGACGTGCAGAGCGCTTCGGCATTCCGCTGT
CAGAAGAGGCCAAGAAGAAGGCCCGGGCAGAACGCTTCGGAGTGGTTAAA
CCAGCCAATGCGACAGCTTCCAATCTGTTAAAAGGTGCGATCGAAAGCAA
GGGTACCTCGAAAGCGGGACCTTTGCAAGGCGTTCCCGTGGTGGATGCTG
CGGAAGAGGCCCGGCGACGCGCGCGCGCGGCACGCTTTGGCATCCCTGAT
CCAAAGCTGGAGGAAGAAAAGAAAGCAGAGCGCGCGCGGCGATTTGCGGA
CCCGGCGAAATTGGAAGAAGAAGCCAAGAAGAAAGCACGGATGGAGCGAT
TTGGAGCAACCACGTCGTGAATGGACTTGGACTTGAAGAAGCTGAAGGTC
GACCAGCTCCGTGAGGAACTGAGCAAGCGTGGGCTCGACACAAAGGGCAA
AAAGGATGAGCTGCAAGAGCGTCTTCAGAATGCAATCGATACAGAAATGT
TAGACGCCATCGACGAAGAAGACGATGTAGGCGCACCTCCTCCCGCTGCC
CTCCCTCCTTTATCGGCAGCCCCCCCCGCGCTGGCACCAGCACCAGTGCC
CGCATCCCACACAAAGACTGCACCGTCCCCTCAGCCACGCGCTCCATTCC
ACGAGAACAGTGCCGCATCCGAGACGGCCGCGTCAACCGCCCCTACATCT
GCTCCTGCTTCCATGCCTACGCCAGCCGCAGTGACGGGGACGACTGCTCC
TGCGAGCCAGGACAAGACGGAAGAGACAGAGGAAGAAAAGAAGCGACGAC
GTGCAGAGCGCTTCGGCATTCCGCTGTCAGAAGAGGCCAAGAAGAAGGCC
CGGGCAGAACGCTTCGGAGTGGTTAAACCAGCCAATGCGACAGCTTCCAA
TCTGTTAAAAGGTGCGATCGAAAGCAAGGGTACCTCGAAAGCGGGACCTT
TGCAAGGCGTTCCCGTGGTGGATGCTGCGGAAGAGGCCCGGCGACGCGCG
CGCGCGGCACGCTTTGGCATCCCTGATCCAAAGCTGGAGGAAGAAAAGAA
AGCAGAGCGCGCGCGGCGATTTGCGGACCCGGCGAAATTGGAAGAAGAAG
CCAA
back to top
Synonyms
Publications