rna5644, rna5644 (mRNA) Nannochloropsis gaditana

Overview
Namerna5644
Unique Namerna5644
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length672
Alignment locationCM002466.1:471777..472995 +

Link to JBrowse

Properties
Property NameValue
ProductTranscription initiation factor IIA gamma subunit
Orig transcript idgnl|cribi|Naga_100049g22.2108.mrna
Orig protein idgnl|cribi|Naga_100049g22.2108
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:471777..472995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100049g22gene5454Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5644rna5644-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25049.1cds5629Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5644 ID=rna5644|Name=rna5644|organism=Nannochloropsis gaditana|type=mRNA|length=672bp
ATGCCAACAAGAAATGGGACTCAGGAGGAAAAACAGCCATTGCGATCTGG
AACAGAAATAAGACCAATATACTCTATTCCCAATTCTGGGGACCTTGGGA
GCGGATCAGATGCTCATCGCAACGGAGACCGACCCGTGATCACAACGTCC
GCTCCAGCTCCACACGCACACTCACTTTTTGGAAACTGGTGGCCGTTCTC
AAAGGGAAGATTTTCCGGAGACCATGACTCACTCGGAAGCCCCTCCGCTT
CCGGCGCACGTAAAGTCCGTAAAGCGCCCGTCAAAGTGGAGCCCAAGGTC
TTCTTTGCGAACGAGAGGACGTTCTTGGCCTGGCTCAACATGTCGGTGAC
GCTTTCCTCGATCTCTGTGGCCATCTTAGCCTTCGCGGACCACAACGAGT
TCTCACAAGTGTACGGCTTTATCATCCTCCCGGTGGCCATCTGTTTCTGT
GTCTACGCGATGCGGACGTACATGAAAAGGTCATCCATGCTTCGGAACCG
CATGCCAGGCCCTTACGAGGATCGACTCGGACCCATCGTTCTGACCGTGC
TGCTCGTTCTCACCATTCTCATCAACACGCTTCTGAAAATTATCGACATC
TACACGCCGTCTGGAAGCGGAGGAGGGAGCGAGGGAGGGAGGGTGCCGAT
CAATGGTGGATTCGAAGGCTAA
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protein sequence of rna5644

>rna5644-protein ID=rna5644-protein|Name=rna5644|organism=Nannochloropsis gaditana|type=polypeptide|length=184bp
MASYVWFPQATAVHFEGHHHLELHEQSESMKWKHQHAAALAALEQPTQAA
EDLSFLYRKTSVAQALAEGLQEFSETQDLPENVVADTMEAFDKAILTAME
TVRNVAGRAKGEAELDAYNNINERWRFVFQDGASLATVSDMSLYAEQDGD
VAGCIIGPCSVSAVDVAKVVKGGNVRHGPGRAKG
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mRNA from alignment at CM002466.1:471777..472995+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5644 ID=rna5644|Name=rna5644|organism=Nannochloropsis gaditana|type=mRNA|length=1219bp|location=Sequence derived from alignment at CM002466.1:471777..472995+ (Nannochloropsis gaditana)
ATGGTAAGTAGTGTATGGTAGAGATTATAACAAGTTTCCTGCATAAATCT
GGCAAAGGTCTCCCCGGAGAGACCACAAAGAACAAATTCCGAGGCCATCG
AAGATAGCGCGGAAACCCTAGCGGCCACAGAGACCTGAGAtgtagaggag
gcggacggcgcAAAAAGGCAATCACATGCATCTCTGGCGCACAAAACGTT
GGATaagcccctttcctttcccaatCTATCAGGCATCCTATGTATGGTTT
CCGCAAGCCACTGCTGTTCATTTTGAAGGACATCACCATCTCGGTCGACC
TCGCGACGTCGCTGAGGGCAAGAGATGCGTGACAGTCGGAAGGGCAATGA
AGAGCTTCACGAGCAGAGCGAGTCAATGAAATGGAAACACCAGCATGCTG
CAGCCCTGGCAGCACTTGAGCAACCAACACAAGCGGCCGAAGATCTGTCG
TTCCTGTACCGAAAGACATCCGTGGCACAAGCGCTGGCAGAAGGCTTGCA
AGAGTTCTCAGAAACACAAGACCTGCCCGAAAATGTGGTAGCAGATACCA
TGGAGGCATTCGACAAGGTAATATATGCAATGAAGCACTCATTAGGTCAC
TAGAGAGGATGGTAAAGGAAACTATGCGTCAGAGTCGTACGAtttgaagg
gaagggacTGCTGATGTCACGCGGACGACCTACGCCTTGTCCGACAGATT
GCCTCGAAAATTGTGGGTCACGCGTGGCTGAGAACGCTCCATTCATTTCG
CACCACAGGCCATTCTCACAGCGATGGAGACAGTGCGGAATGTGGCAggc
agggcgaagggagaggtgagaggaggggcgggacggagcGGATTGTGTCT
GCGTTATGACTGCAATGACGACTAAGTGTGAAGTTTTCAGGTGCCAAAAG
CTATGTGACGGAACAAGAATTGTCGTAGTTGTTCTTGTGGCGATATGGTC
CCCCTTGACATCTGTGTTTCGGTAAATCAATTGCATACATTTTGGTGCAG
GCGGAGCTGGATGCGTACAATAACATAAACGAGCGCTGGCGTTTCGTATT
CCAGGACGGTGCCTCGCTGGCGACAGTATCGGACATGTCCTTGTACGCGG
AGCAGGACGGGGATGTAGCAGGCTGCATTATAGGACCCTGTAGCGTGAGC
GCGGTGGATGTGGCCAAGGTGGTGAAGGGGGGCAACGTGCGGCATGGCCC
GGGCCGAGCTAAGGGATGA
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Coding sequence (CDS) from alignment at CM002466.1:471777..472995+

>rna5644 ID=rna5644|Name=rna5644|organism=Nannochloropsis gaditana|type=CDS|length=2775bp|location=Sequence derived from alignment at CM002466.1:471777..472995+ (Nannochloropsis gaditana)
ATGGCATCCTATGTATGGTTTCCGCAAGCCACTGCTGTTCATTTTGAAGG
ACATCACCATCTCGAGCTTCACGAGCAGAGCGAGTCAATGAAATGGAAAC
ACCAGCATGCTGCAGCCCTGGCAGCACTTGAGCAACCAACACAAGCGGCC
GAAGATCTGTCGTTCCTGTACCGAAAGACATCCGTGGCACAAGCGCTGGC
AGAAGGCTTGCAAGAGTTCTCAGAAACACAAGACCTGCCCGAAAATGTGG
TAGCAGATACCATGGAGGCATTCGACAAGGCCATTCTCACAGCGATGGAG
ACAGTGCGGAATGTGGCAggcagggcgaagggagagGCGGAGCTGGATGC
GTACAATAACATAAACGAGCGCTGGCGTTTCGTATTCCAGGACGGTGCCT
CGCTGGCGACAGTATCGGACATGTCCTTGTACGCGGAGCAGGACGGGGAT
GTAGCAGGCTGCATTATAGGACCCTGTAGCGTGAGCGCGGTGGATGTGGC
CAAGGTGGTGAAGGGGGGCAACGTGCGGCATGGCCCGGGCCGAGCTAAGG
GATGAATGGCATCCTATGTATGGTTTCCGCAAGCCACTGCTGTTCATTTT
GAAGGACATCACCATCTCGAGCTTCACGAGCAGAGCGAGTCAATGAAATG
GAAACACCAGCATGCTGCAGCCCTGGCAGCACTTGAGCAACCAACACAAG
CGGCCGAAGATCTGTCGTTCCTGTACCGAAAGACATCCGTGGCACAAGCG
CTGGCAGAAGGCTTGCAAGAGTTCTCAGAAACACAAGACCTGCCCGAAAA
TGTGGTAGCAGATACCATGGAGGCATTCGACAAGGCCATTCTCACAGCGA
TGGAGACAGTGCGGAATGTGGCAggcagggcgaagggagagGCGGAGCTG
GATGCGTACAATAACATAAACGAGCGCTGGCGTTTCGTATTCCAGGACGG
TGCCTCGCTGGCGACAGTATCGGACATGTCCTTGTACGCGGAGCAGGACG
GGGATGTAGCAGGCTGCATTATAGGACCCTGTAGCGTGAGCGCGGTGGAT
GTGGCCAAGGTGGTGAAGGGGGGCAACGTGCGGCATGGCCCGGGCCGAGC
TAAGGGATGAATGGCATCCTATGTATGGTTTCCGCAAGCCACTGCTGTTC
ATTTTGAAGGACATCACCATCTCGAGCTTCACGAGCAGAGCGAGTCAATG
AAATGGAAACACCAGCATGCTGCAGCCCTGGCAGCACTTGAGCAACCAAC
ACAAGCGGCCGAAGATCTGTCGTTCCTGTACCGAAAGACATCCGTGGCAC
AAGCGCTGGCAGAAGGCTTGCAAGAGTTCTCAGAAACACAAGACCTGCCC
GAAAATGTGGTAGCAGATACCATGGAGGCATTCGACAAGGCCATTCTCAC
AGCGATGGAGACAGTGCGGAATGTGGCAggcagggcgaagggagagGCGG
AGCTGGATGCGTACAATAACATAAACGAGCGCTGGCGTTTCGTATTCCAG
GACGGTGCCTCGCTGGCGACAGTATCGGACATGTCCTTGTACGCGGAGCA
GGACGGGGATGTAGCAGGCTGCATTATAGGACCCTGTAGCGTGAGCGCGG
TGGATGTGGCCAAGGTGGTGAAGGGGGGCAACGTGCGGCATGGCCCGGGC
CGAGCTAAGGGATGAATGGCATCCTATGTATGGTTTCCGCAAGCCACTGC
TGTTCATTTTGAAGGACATCACCATCTCGAGCTTCACGAGCAGAGCGAGT
CAATGAAATGGAAACACCAGCATGCTGCAGCCCTGGCAGCACTTGAGCAA
CCAACACAAGCGGCCGAAGATCTGTCGTTCCTGTACCGAAAGACATCCGT
GGCACAAGCGCTGGCAGAAGGCTTGCAAGAGTTCTCAGAAACACAAGACC
TGCCCGAAAATGTGGTAGCAGATACCATGGAGGCATTCGACAAGGCCATT
CTCACAGCGATGGAGACAGTGCGGAATGTGGCAggcagggcgaagggaga
gGCGGAGCTGGATGCGTACAATAACATAAACGAGCGCTGGCGTTTCGTAT
TCCAGGACGGTGCCTCGCTGGCGACAGTATCGGACATGTCCTTGTACGCG
GAGCAGGACGGGGATGTAGCAGGCTGCATTATAGGACCCTGTAGCGTGAG
CGCGGTGGATGTGGCCAAGGTGGTGAAGGGGGGCAACGTGCGGCATGGCC
CGGGCCGAGCTAAGGGATGAATGGCATCCTATGTATGGTTTCCGCAAGCC
ACTGCTGTTCATTTTGAAGGACATCACCATCTCGAGCTTCACGAGCAGAG
CGAGTCAATGAAATGGAAACACCAGCATGCTGCAGCCCTGGCAGCACTTG
AGCAACCAACACAAGCGGCCGAAGATCTGTCGTTCCTGTACCGAAAGACA
TCCGTGGCACAAGCGCTGGCAGAAGGCTTGCAAGAGTTCTCAGAAACACA
AGACCTGCCCGAAAATGTGGTAGCAGATACCATGGAGGCATTCGACAAGG
CCATTCTCACAGCGATGGAGACAGTGCGGAATGTGGCAggcagggcgaag
ggagagGCGGAGCTGGATGCGTACAATAACATAAACGAGCGCTGGCGTTT
CGTATTCCAGGACGGTGCCTCGCTGGCGACAGTATCGGACATGTCCTTGT
ACGCGGAGCAGGACGGGGATGTAGCAGGCTGCATTATAGGACCCTGTAGC
GTGAGCGCGGTGGATGTGGCCAAGGTGGTGAAGGGGGGCAACGTGCGGCA
TGGCCCGGGCCGAGCTAAGGGATGA
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Synonyms
Publications