EWM25049.1, cds5629 (CDS) Nannochloropsis gaditana

Overview
NameEWM25049.1
Unique Namecds5629
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:471777..471779 +
Alignment locationCM002466.1:472009..472069 +
Alignment locationCM002466.1:472129..472343 +
Alignment locationCM002466.1:472535..472591 +
Alignment locationCM002466.1:472777..472995 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25049.1
ProductTranscription initiation factor IIA gamma subunit
Orig transcript idgnl|cribi|Naga_100049g22.2108.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:471777..471779 +
CM002466.1supercontigCM002466.1:472009..472069 +
CM002466.1supercontigCM002466.1:472129..472343 +
CM002466.1supercontigCM002466.1:472535..472591 +
CM002466.1supercontigCM002466.1:472777..472995 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
GO:0005672transcription factor TFIIA complex
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006367transcription initiation from RNA polymerase II promoter
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009083TFIIA_a-hlx
IPR015872TFIIA_gsu_N
Homology
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BLAST of EWM25049.1 vs. NCBI_GenBank
Match: gi|585106685|gb|EWM25049.1| (Transcription initiation factor IIA gamma subunit [Nannochloropsis gaditana])

HSP 1 Score: 382.874 bits (982), Expect = 1.133e-134
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 
Query:    1 MASYVWFPQATAVHFEGHHHLELHEQSESMKWKHQHAAALAALEQPTQAAEDLSFLYRKTSVAQALAEGLQEFSETQDLPENVVADTMEAFDKAILTAMETVRNVAGRAKGEAELDAYNNINERWRFVFQDGASLATVSDMSLYAEQDGDVAGCIIGPCSVSAVDVAKVVKGGNVRHGPGRAKG 184
            MASYVWFPQATAVHFEGHHHLELHEQSESMKWKHQHAAALAALEQPTQAAEDLSFLYRKTSVAQALAEGLQEFSETQDLPENVVADTMEAFDKAILTAMETVRNVAGRAKGEAELDAYNNINERWRFVFQDGASLATVSDMSLYAEQDGDVAGCIIGPCSVSAVDVAKVVKGGNVRHGPGRAKG
Sbjct:    1 MASYVWFPQATAVHFEGHHHLELHEQSESMKWKHQHAAALAALEQPTQAAEDLSFLYRKTSVAQALAEGLQEFSETQDLPENVVADTMEAFDKAILTAMETVRNVAGRAKGEAELDAYNNINERWRFVFQDGASLATVSDMSLYAEQDGDVAGCIIGPCSVSAVDVAKVVKGGNVRHGPGRAKG 184
The following BLAST results are available for this feature:
BLAST of EWM25049.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585106685|gb|EWM25049.1|1.133e-134100.00Transcription initiation factor IIA gamma subunit ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5644rna5644Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications