rna5636, rna5636 (mRNA) Nannochloropsis gaditana

Overview
Namerna5636
Unique Namerna5636
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:457323..458447 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100049g33.2105.mrna
Orig protein idgnl|cribi|Naga_100049g33.2105
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:457323..458447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100049g33gene5446Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5636rna5636-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25046.1cds5621Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

protein sequence of rna5636

>rna5636-protein ID=rna5636-protein|Name=rna5636|organism=Nannochloropsis gaditana|type=polypeptide|length=374bp
MALVLAASSLHLLFIVNSAHSYQISRSPQFHQYHRKEALQQSAGIASATA
AVWLGPLSVPQPAEATGLDNVEPTSSTTSPDTPAINPDTTPRSKLLARFS
TSDLTSPGLSGLGGAKLLFLPQFLFGTWNATLCLKDIQLPLGERFVPPQI
LRSLNAVQMEKPTSFPLRFYSTLPDTGENTLRVTLGEVPKSEIVPDRVYN
TRSVLDAFYGYPAVGEIDYDISKNPLRMDVAFATMGPDLQPLPSRRQQLL
FNNLQSDRVRPNDLFVCSEYVRTVTLGPGRRVTVTDSETLSQYELMEDGR
IEGKQRVAFYLTPNPNTVEGTLFFEANNKAVALFDYSFTMKKVGDCVMTP
KAVEQCTAPEGSYVKVNEPVDDGA
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mRNA from alignment at CM002466.1:457323..458447+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5636 ID=rna5636|Name=rna5636|organism=Nannochloropsis gaditana|type=mRNA|length=1125bp|location=Sequence derived from alignment at CM002466.1:457323..458447+ (Nannochloropsis gaditana)
ATGGCGCTTGTCCtggctgcttcctcccttcacctcctcttcatcgtaAA
CTCTGCGCACTCTTACCAGATATCCCGCTCGCCCCAGTTTCACCAATATC
ATCGCAAAGAGGCGCTGCAGCAATCAGCTGGTATCGCTTCCGCCACGGCC
GCTGTGTGGCTCGGACCTTTGTCTGTGCCTCAACCCGCTGAGGCGACGGG
GTTGGACAACGTCGAACCTACAAGCTCAACAACCTCCCCCGATACGCCGG
CTATCAACCCTGACACTACACCAAGAAGCAAACTACTCGCCCGCTTCTCC
ACGTCCGATCTTACAAGCCCTGGGCTCTCAGGGCTTGGTGGCGCCAAgct
tcttttcttgccgCAGTTCCTTTTTGGCACGTGGAACGCAACCTTATGCT
TGAAAGACATACAACTGCCACTCGGAGAGCGATTCGTCCCCCCACAAATA
TTACGTTCCCTAAATGCAGTGCAAATGGAAAAGCCTACGTCGTTCCCTCT
TCGCTTCTACTCGACCTTGCCTGACACAGGAGAGAACACCTTACGCGTCA
CCTTGGGGGAGGTCCCCAAGTCGGAGATCGTCCCGGATCGCGTGTATAAC
ACTAGGTCTGTTTTGGACGCCTTCTACGGCTACCCAGCCGTGGGCGAAAT
AGATTACGATATTTCCAAAAATCCGCTCCGTATGGACGTGGCTTTTGCAA
CCATGGGTCCAGATCTGCaacccttgccctcccgaAGGCAACAGCTACTT
TTCAACAACTTGCAAAGCGATCGAGTCCGTCCCAATGACTTATTCGTCTG
CTCTGAGTACGTTCGCACTGTCACTTTGGGCCCTGGTCGGCGTGTGACGG
TCACAGATTCCGAAACCTTATCGCAGTACGAGCTGATGGAAGACGGGCGC
ATCGAGGGCAAGCAACGCGTGGCCTTTTACCTGACGCCCAACCCCAATAC
AGTGGAGGGGACCCTCTTCTTTGAGGCTAACAACAAAGCTGTCGCCTTGT
TTGATTATTCTTTCACAATGAAAAAGGTAGGAGATTGCGTGATGACACCG
AAGGCCGTGGAGCAATGCACGGCACCGGAAGGCAGCTACGTGAAGGTGAA
CGAACCAGTGGATGATGGCGCTTAG
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Coding sequence (CDS) from alignment at CM002466.1:457323..458447+

>rna5636 ID=rna5636|Name=rna5636|organism=Nannochloropsis gaditana|type=CDS|length=1125bp|location=Sequence derived from alignment at CM002466.1:457323..458447+ (Nannochloropsis gaditana)
ATGGCGCTTGTCCtggctgcttcctcccttcacctcctcttcatcgtaAA
CTCTGCGCACTCTTACCAGATATCCCGCTCGCCCCAGTTTCACCAATATC
ATCGCAAAGAGGCGCTGCAGCAATCAGCTGGTATCGCTTCCGCCACGGCC
GCTGTGTGGCTCGGACCTTTGTCTGTGCCTCAACCCGCTGAGGCGACGGG
GTTGGACAACGTCGAACCTACAAGCTCAACAACCTCCCCCGATACGCCGG
CTATCAACCCTGACACTACACCAAGAAGCAAACTACTCGCCCGCTTCTCC
ACGTCCGATCTTACAAGCCCTGGGCTCTCAGGGCTTGGTGGCGCCAAgct
tcttttcttgccgCAGTTCCTTTTTGGCACGTGGAACGCAACCTTATGCT
TGAAAGACATACAACTGCCACTCGGAGAGCGATTCGTCCCCCCACAAATA
TTACGTTCCCTAAATGCAGTGCAAATGGAAAAGCCTACGTCGTTCCCTCT
TCGCTTCTACTCGACCTTGCCTGACACAGGAGAGAACACCTTACGCGTCA
CCTTGGGGGAGGTCCCCAAGTCGGAGATCGTCCCGGATCGCGTGTATAAC
ACTAGGTCTGTTTTGGACGCCTTCTACGGCTACCCAGCCGTGGGCGAAAT
AGATTACGATATTTCCAAAAATCCGCTCCGTATGGACGTGGCTTTTGCAA
CCATGGGTCCAGATCTGCaacccttgccctcccgaAGGCAACAGCTACTT
TTCAACAACTTGCAAAGCGATCGAGTCCGTCCCAATGACTTATTCGTCTG
CTCTGAGTACGTTCGCACTGTCACTTTGGGCCCTGGTCGGCGTGTGACGG
TCACAGATTCCGAAACCTTATCGCAGTACGAGCTGATGGAAGACGGGCGC
ATCGAGGGCAAGCAACGCGTGGCCTTTTACCTGACGCCCAACCCCAATAC
AGTGGAGGGGACCCTCTTCTTTGAGGCTAACAACAAAGCTGTCGCCTTGT
TTGATTATTCTTTCACAATGAAAAAGGTAGGAGATTGCGTGATGACACCG
AAGGCCGTGGAGCAATGCACGGCACCGGAAGGCAGCTACGTGAAGGTGAA
CGAACCAGTGGATGATGGCGCTTAG
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Synonyms
Publications