EWM25075.1, cds5612 (CDS) Nannochloropsis gaditana

Overview
NameEWM25075.1
Unique Namecds5612
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:438713..439980 +
Alignment locationCM002466.1:440112..440130 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25075.1
Productatp-dependent clp protease atp-binding subunit
Orig transcript idgnl|cribi|Naga_100098g23.5269.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:438713..439980 +
CM002466.1supercontigCM002466.1:440112..440130 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005515protein binding
GO:0000166nucleotide binding
GO:0051082unfolded protein binding
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0019538protein metabolic process
GO:0006457protein folding
Vocabulary: INTERPRO
TermDefinition
IPR004487Clp_protease_ATP-bd_su_ClpX
IPR003959ATPase_AAA_core
IPR027417P-loop_NTPase
IPR003593AAA+_ATPase
Homology
BLAST of EWM25075.1 vs. NCBI_GenBank
Match: gi|585106712|gb|EWM25075.1| (atp-dependent clp protease atp-binding subunit [Nannochloropsis gaditana])

HSP 1 Score: 875.93 bits (2262), Expect = 0.000e+0
Identity = 428/428 (100.00%), Postives = 428/428 (100.00%), Query Frame = 0
Query:    1 MWRPYAAAVARRCVKRPTWSAVCHGSPGGRTQNLSTSHPPTSTLSSAAVPPKAFRVLSPREIYEGLEKYVIGQEDVKTGLAVGVHAHYLRLYSKEQARQAAEAAEAANGQRKRKHAAPALAAREGDTMTVYHNGKTSSLILSEPGDMDTASGSVHRFLREEILNAASGNPSSLSSTSNTSSGNGNDPSSSPSFPNARKGMTIRLHHDPRRRTRPRPSVEPVELEKSNILMLGPTGSGKTLLAKTLAKLLDVPLVLTDATCLTQAGYVGEDVESLLFKLYQAAGQDLEATERGIIYIDEIDKLSKRESGSVRDVSGEGVQQALLKMLEGNVVNVPKAGGRKNPRGEHVQIDTTDILFICGGAFAGLEGVIARRVSQASIGFGASLGGKGGGRGPIKAPCSRKWSPTIWSSLASSRSWWGGCRRSCTRKA 428
            MWRPYAAAVARRCVKRPTWSAVCHGSPGGRTQNLSTSHPPTSTLSSAAVPPKAFRVLSPREIYEGLEKYVIGQEDVKTGLAVGVHAHYLRLYSKEQARQAAEAAEAANGQRKRKHAAPALAAREGDTMTVYHNGKTSSLILSEPGDMDTASGSVHRFLREEILNAASGNPSSLSSTSNTSSGNGNDPSSSPSFPNARKGMTIRLHHDPRRRTRPRPSVEPVELEKSNILMLGPTGSGKTLLAKTLAKLLDVPLVLTDATCLTQAGYVGEDVESLLFKLYQAAGQDLEATERGIIYIDEIDKLSKRESGSVRDVSGEGVQQALLKMLEGNVVNVPKAGGRKNPRGEHVQIDTTDILFICGGAFAGLEGVIARRVSQASIGFGASLGGKGGGRGPIKAPCSRKWSPTIWSSLASSRSWWGGCRRSCTRKA
Sbjct:    1 MWRPYAAAVARRCVKRPTWSAVCHGSPGGRTQNLSTSHPPTSTLSSAAVPPKAFRVLSPREIYEGLEKYVIGQEDVKTGLAVGVHAHYLRLYSKEQARQAAEAAEAANGQRKRKHAAPALAAREGDTMTVYHNGKTSSLILSEPGDMDTASGSVHRFLREEILNAASGNPSSLSSTSNTSSGNGNDPSSSPSFPNARKGMTIRLHHDPRRRTRPRPSVEPVELEKSNILMLGPTGSGKTLLAKTLAKLLDVPLVLTDATCLTQAGYVGEDVESLLFKLYQAAGQDLEATERGIIYIDEIDKLSKRESGSVRDVSGEGVQQALLKMLEGNVVNVPKAGGRKNPRGEHVQIDTTDILFICGGAFAGLEGVIARRVSQASIGFGASLGGKGGGRGPIKAPCSRKWSPTIWSSLASSRSWWGGCRRSCTRKA 428          
BLAST of EWM25075.1 vs. NCBI_GenBank
Match: gi|970654597|gb|KUF92890.1| (ATP-dependent Clp protease ATP-binding subunit ClpX [Phytophthora nicotianae] >gi|970664582|gb|KUG01466.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Phytophthora nicotianae])

HSP 1 Score: 315.849 bits (808), Expect = 2.374e-99
Identity = 181/337 (53.71%), Postives = 231/337 (68.55%), Query Frame = 0
Query:   55 RVLSPREIYEGLEKYVIGQEDVKTGLAVGVHAHYLRLYSKE--QARQAAEAAEAANGQRKRKHAAPALAAREGDTMTVYHNGKTSSLILSEPGDMDTA--SGSVHRFLREEILNAASGNPSSLSSTSNTSSGNGNDPSSSPSFPNARKGMTIRL-HHDPRRRTRPRPSVEPVELEKSNILMLGPTGSGKTLLAKTLAKLLDVPLVLTDATCLTQAGYVGEDVESLLFKLYQAAGQDLEATERGIIYIDEIDKLSKR-ESGSV-RDVSGEGVQQALLKMLEGNVVNVPKAGGRKNPRGEHVQIDTTDILFICGGAFAGLEGVIARRVSQASIGFGASL 384
            RVL+PREIY+GL +YVIGQ+ VK  LAVGVH HY RL++ E  QAR+ AEAA A       KH A +   R G        G T   +     DMD +  S    R L EEI   +  N + +    N+      + + +P           RL HH    + +    +E VEL+K+N++++GPTGSGKTLLAKTLA+L  VP+V+ DATCLTQAGYVGEDVES+LFKLYQAA  +LEAT+RGI+YIDEIDK++++ E+ S+ RDVSGEGVQQALLK+LEG++VNVP+ GGRKNPRGE++ IDTT+ILFICGGAFAGLE  + RR S++SIGFGA +
Sbjct:   54 RVLTPREIYDGLNEYVIGQDKVKKTLAVGVHNHYKRLHALELLQARKEAEAACA-------KHNASSQHPRAG--------GVTRQHV-----DMDDSRLSSIGRRLLLEEIYPGSEKNDAEVPQ--NSKQHASEETAEAPKTTETTHTHATRLQHHSLGDKLQ---YLEGVELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQAANYNLEATQRGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPRGEYITIDTTNILFICGGAFAGLEKQVTRRTSRSSIGFGAQM 365          
BLAST of EWM25075.1 vs. NCBI_GenBank
Match: gi|675201991|ref|XP_008909880.1| (ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica INRA-310] >gi|568090106|gb|ETN04943.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica INRA-310])

HSP 1 Score: 315.464 bits (807), Expect = 1.956e-97
Identity = 181/337 (53.71%), Postives = 231/337 (68.55%), Query Frame = 0
Query:   55 RVLSPREIYEGLEKYVIGQEDVKTGLAVGVHAHYLRLYSKE--QARQAAEAAEAANGQRKRKHAAPALAAREGDTMTVYHNGKTSSLILSEPGDMDTASGSV--HRFLREEILNAASGNPSSLSSTSNTSSGNGNDPSSSPSFPNARKGMTIRL-HHDPRRRTRPRPSVEPVELEKSNILMLGPTGSGKTLLAKTLAKLLDVPLVLTDATCLTQAGYVGEDVESLLFKLYQAAGQDLEATERGIIYIDEIDKLSKR-ESGSV-RDVSGEGVQQALLKMLEGNVVNVPKAGGRKNPRGEHVQIDTTDILFICGGAFAGLEGVIARRVSQASIGFGASL 384
            RVL+PREIY+GL +YVIGQ+ VK  LAVGVH HY RL++ E  QAR+ AEAA A       KH A +   R G        G T   +     DMD +  S    R L EEI   +  N + +    N+      + + +P           RL HH    + +    +E VEL+K+N++++GPTGSGKTLLAKTLA+L  VP+V+ DATCLTQAGYVGEDVES+LFKLYQAA  +LEAT+RGI+YIDEIDK++++ E+ S+ RDVSGEGVQQALLK+LEG++VNVP+ GGRKNPRGE++ IDTT+ILFICGGAFAGLE  + RR S++SIGFGA +
Sbjct:  214 RVLTPREIYDGLNEYVIGQDKVKKTLAVGVHNHYKRLHALELLQARKEAEAACA-------KHNASSQHPRAG--------GVTRQHV-----DMDDSRLSSIGRRLLLEEIYPGSEKNDAEVPQ--NSKQHASEETAEAPKTTETTHTHATRLQHHSLGDKLQ---YLEGVELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQAANYNLEATQRGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPRGEYITIDTTNILFICGGAFAGLEKQVTRRTSRSSIGFGAQM 525          
BLAST of EWM25075.1 vs. NCBI_GenBank
Match: gi|301118793|ref|XP_002907124.1| (ATP-dependent Clp protease ATP-binding subunit clpX [Phytophthora infestans T30-4] >gi|262105636|gb|EEY63688.1| ATP-dependent Clp protease ATP-binding subunit clpX [Phytophthora infestans T30-4])

HSP 1 Score: 315.464 bits (807), Expect = 2.290e-97
Identity = 181/336 (53.87%), Postives = 229/336 (68.15%), Query Frame = 0
Query:   55 RVLSPREIYEGLEKYVIGQEDVKTGLAVGVHAHYLRLYSKE--QARQAAEAAEAANGQRKRKHAAPALAAREGDTMTVYHNGKTSSLILSEPGDMDT--ASGSVHRFLREEILNAASGNPSSLSSTSNTSSGNGNDPSSSPSFPNARKGMTIRLHHDPRRRTRPRPSVEPVELEKSNILMLGPTGSGKTLLAKTLAKLLDVPLVLTDATCLTQAGYVGEDVESLLFKLYQAAGQDLEATERGIIYIDEIDKLSKR-ESGSV-RDVSGEGVQQALLKMLEGNVVNVPKAGGRKNPRGEHVQIDTTDILFICGGAFAGLEGVIARRVSQASIGFGASL 384
            RVL+PREIYEGL +YVIGQ+ VK  LAVGVH HY RL++ E  QAR+ AEAA A       KH A +   R G        G T   +     DMD    S    R L EEI   +  N + +  TS   +       +  +         ++ HH    + +    +E VEL+K+N++++GPTGSGKTLLAKTLA+L  VP+V+ DATCLTQAGYVGEDVES+LFKLYQAA  +LEAT+RGI+YIDEIDK++++ E+ S+ RDVSGEGVQQALLK+LEG++VNVP+ GGRKNPRGEH+ IDTT+ILFICGGAFAGLE  + RR S++SIGFGA +
Sbjct:  217 RVLTPREIYEGLNEYVIGQDKVKKTLAVGVHNHYKRLHALELLQARKEAEAACA-------KHNASSQHPRAG--------GVTRQHV-----DMDDPRLSNIGRRLLLEEIYPGSDKNDAEMPPTSKQHASEETAEVTKTTETTHTHATRLQ-HHSMGDKLQ---YLEGVELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQAANYNLEATQRGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPRGEHITIDTTNILFICGGAFAGLEKQVTRRTSRSSIGFGAQM 528          
BLAST of EWM25075.1 vs. NCBI_GenBank
Match: gi|568042950|gb|ETM40261.1| (ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica])

HSP 1 Score: 315.079 bits (806), Expect = 2.345e-97
Identity = 181/337 (53.71%), Postives = 231/337 (68.55%), Query Frame = 0
Query:   55 RVLSPREIYEGLEKYVIGQEDVKTGLAVGVHAHYLRLYSKE--QARQAAEAAEAANGQRKRKHAAPALAAREGDTMTVYHNGKTSSLILSEPGDMDTASGSV--HRFLREEILNAASGNPSSLSSTSNTSSGNGNDPSSSPSFPNARKGMTIRL-HHDPRRRTRPRPSVEPVELEKSNILMLGPTGSGKTLLAKTLAKLLDVPLVLTDATCLTQAGYVGEDVESLLFKLYQAAGQDLEATERGIIYIDEIDKLSKR-ESGSV-RDVSGEGVQQALLKMLEGNVVNVPKAGGRKNPRGEHVQIDTTDILFICGGAFAGLEGVIARRVSQASIGFGASL 384
            RVL+PREIY+GL +YVIGQ+ VK  LAVGVH HY RL++ E  QAR+ AEAA A       KH A +   R G        G T   +     DMD +  S    R L EEI   +  N + +    N+      + + +P           RL HH    + +    +E VEL+K+N++++GPTGSGKTLLAKTLA+L  VP+V+ DATCLTQAGYVGEDVES+LFKLYQAA  +LEAT+RGI+YIDEIDK++++ E+ S+ RDVSGEGVQQALLK+LEG++VNVP+ GGRKNPRGE++ IDTT+ILFICGGAFAGLE  + RR S++SIGFGA +
Sbjct:  214 RVLTPREIYDGLNEYVIGQDKVKKTLAVGVHNHYKRLHALELLQARKEAEAACA-------KHNASSQHPRAG--------GVTRQHV-----DMDDSRLSSIGRRLLLEEIYPGSEKNDAEVPQ--NSKQHASEETAEAPKTTETTHTHATRLQHHSLGDKLQ---YLEGVELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQAANYNLEATQRGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPRGEYITIDTTNILFICGGAFAGLEKQVTRRTSRSSIGFGAQM 525          
BLAST of EWM25075.1 vs. NCBI_GenBank
Match: gi|566017367|gb|ETI40278.1| (ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica P1569] >gi|567954753|gb|ETK80386.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica] >gi|567983418|gb|ETL33811.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica] >gi|568012912|gb|ETL87089.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica] >gi|570321047|gb|ETO68995.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica P1976] >gi|570944846|gb|ETP10103.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica CJ01A1] >gi|570976365|gb|ETP38190.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica P10297])

HSP 1 Score: 314.694 bits (805), Expect = 3.297e-97
Identity = 181/337 (53.71%), Postives = 231/337 (68.55%), Query Frame = 0
Query:   55 RVLSPREIYEGLEKYVIGQEDVKTGLAVGVHAHYLRLYSKE--QARQAAEAAEAANGQRKRKHAAPALAAREGDTMTVYHNGKTSSLILSEPGDMDTASGSV--HRFLREEILNAASGNPSSLSSTSNTSSGNGNDPSSSPSFPNARKGMTIRL-HHDPRRRTRPRPSVEPVELEKSNILMLGPTGSGKTLLAKTLAKLLDVPLVLTDATCLTQAGYVGEDVESLLFKLYQAAGQDLEATERGIIYIDEIDKLSKR-ESGSV-RDVSGEGVQQALLKMLEGNVVNVPKAGGRKNPRGEHVQIDTTDILFICGGAFAGLEGVIARRVSQASIGFGASL 384
            RVL+PREIY+GL +YVIGQ+ VK  LAVGVH HY RL++ E  QAR+ AEAA A       KH A +   R G        G T   +     DMD +  S    R L EEI   +  N + +    N+      + + +P           RL HH    + +    +E VEL+K+N++++GPTGSGKTLLAKTLA+L  VP+V+ DATCLTQAGYVGEDVES+LFKLYQAA  +LEAT+RGI+YIDEIDK++++ E+ S+ RDVSGEGVQQALLK+LEG++VNVP+ GGRKNPRGE++ IDTT+ILFICGGAFAGLE  + RR S++SIGFGA +
Sbjct:  210 RVLTPREIYDGLNEYVIGQDKVKKTLAVGVHNHYKRLHALELLQARKEAEAACA-------KHNASSQHPRAG--------GVTRQHV-----DMDDSRLSSIGRRLLLEEIYPGSEKNDAEVPQ--NSKQHASEETAEAPKTTETTHTHATRLQHHSLGDKLQ---YLEGVELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQAANYNLEATQRGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPRGEYITIDTTNILFICGGAFAGLEKQVTRRTSRSSIGFGAQM 521          
BLAST of EWM25075.1 vs. NCBI_GenBank
Match: gi|1214697327|gb|OWZ10628.1| (ATP-dependent Clp protease [Phytophthora megakarya])

HSP 1 Score: 312.768 bits (800), Expect = 1.864e-96
Identity = 183/336 (54.46%), Postives = 231/336 (68.75%), Query Frame = 0
Query:   55 RVLSPREIYEGLEKYVIGQEDVKTGLAVGVHAHYLRLYSKE--QARQAAEAAEAANGQRKRKHAAPALAAREGDTMTVYHNGKTSSLILSEPGDMDTASGSV--HRFLREEILNAASGNPSSLSSTSNTSSGNGNDPSSSPSFPNARKGMTIRLHHDPRRRTRPRPSVEPVELEKSNILMLGPTGSGKTLLAKTLAKLLDVPLVLTDATCLTQAGYVGEDVESLLFKLYQAAGQDLEATERGIIYIDEIDKLSKR-ESGSV-RDVSGEGVQQALLKMLEGNVVNVPKAGGRKNPRGEHVQIDTTDILFICGGAFAGLEGVIARRVSQASIGFGASL 384
            RVL+PREIYEGL +YVIGQ+ VK  LAVGVH HY RL++ E  QAR+ AEAA A       KH A     R G        G T   +     DMD +  S    R L EEI   A     +  S+   +S +  + S +P  P A    T   HH    + +    +E VEL+K+N++++GPTGSGKTLLAKTLA+L  VP+V+ DATCLTQAGYVGEDVES+LFKLYQAA  +LEAT+RGI+YIDEIDK++++ E+ S+ RDVSGEGVQQALLK+LEG++VNVP+ GGRKNPRGE++ I+TT+ILFICGGAFAGLE  +  R S++SIGFGA +
Sbjct:  209 RVLTPREIYEGLNEYVIGQDKVKKTLAVGVHNHYKRLHALELLQARKEAEAACA-------KHPAGTQHPRAG--------GVTRQHV-----DMDDSRLSSIGRRLLLEEIYPGAEKRDEASQSSKQHTSEDTAETSETP-LP-AHTHATRLQHHTLGDKLQ---YLEGVELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQAANYNLEATQRGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPRGEYITINTTNILFICGGAFAGLEKQVTSRTSRSSIGFGAQM 519          
BLAST of EWM25075.1 vs. NCBI_GenBank
Match: gi|695391535|ref|XP_009520055.1| (hypothetical protein PHYSODRAFT_554819 [Phytophthora sojae] >gi|348684952|gb|EGZ24767.1| hypothetical protein PHYSODRAFT_554819 [Phytophthora sojae])

HSP 1 Score: 310.071 bits (793), Expect = 2.809e-95
Identity = 179/335 (53.43%), Postives = 227/335 (67.76%), Query Frame = 0
Query:   55 RVLSPREIYEGLEKYVIGQEDVKTGLAVGVHAHYLRLYSKE--QARQAAEAAEAANGQRKRKHAAPALAAREGDTMTVYHNGKTSSLILSEPGDMDTASGSVHRFLREEILNAASGNPSSLSSTSNTSSGNGNDPSSSPSFPNARKGMTIRL-HHDPRRRTRPRPSVEPVELEKSNILMLGPTGSGKTLLAKTLAKLLDVPLVLTDATCLTQAGYVGEDVESLLFKLYQAAGQDLEATERGIIYIDEIDKLSKR-ESGSV-RDVSGEGVQQALLKMLEGNVVNVPKAGGRKNPRGEHVQIDTTDILFICGGAFAGLEGVIARRVSQASIGFGASL 384
            RVL+PREIYEGL +YVIGQ+ VK  LAVGVH HY RL++ E  QAR+ AEAA A     K++HA      R G     + +   S L           S    R L EEI        + L   +   +  G   +S  +          RL HH    + +    +E VEL+K+N++++GPTGSGKTLLAKTLA+L  VP+V+ DATCLTQAGYVGEDVES+LFKLYQAA  +LEAT+RGI+YIDEIDK++++ E+ S+ RDVSGEGVQQALLK+LEG++VNVP+ GGRKNPRGE++ IDTT+ILFICGGAFAGLE  + RR S++SIGFGA +
Sbjct:  230 RVLTPREIYEGLNEYVIGQDKVKKTLAVGVHNHYKRLHALELLQARKDAEAACA-----KQQHA------RAGGVTRQHVDLDDSRL-----------SSIGRRLLLEEIYPGLEKKEAGLEQEAKQRAAEGTSETSEAAAAAPSHAHATRLQHHSLGDKLQ---YLEGVELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQAANYNLEATQRGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPRGEYITIDTTNILFICGGAFAGLEKQVTRRTSRSSIGFGAQM 539          
BLAST of EWM25075.1 vs. NCBI_GenBank
Match: gi|301091465|ref|XP_002895917.1| (ATP-dependent Clp protease ATP-binding subunit clpX, putative [Phytophthora infestans T30-4] >gi|262096081|gb|EEY54133.1| ATP-dependent Clp protease ATP-binding subunit clpX, putative [Phytophthora infestans T30-4])

HSP 1 Score: 305.449 bits (781), Expect = 1.766e-93
Identity = 177/334 (52.99%), Postives = 226/334 (67.66%), Query Frame = 0
Query:   57 LSPREIYEGLEKYVIGQEDVKTGLAVGVHAHYLRLYSKE--QARQAAEAAEAANGQRKRKHAAPALAAREGDTMTVYHNGKTSSLILSEPGDMDT--ASGSVHRFLREEILNAASGNPSSLSSTSNTSSGNGNDPSSSPSFPNARKGMTIRLHHDPRRRTRPRPSVEPVELEKSNILMLGPTGSGKTLLAKTLAKLLDVPLVLTDATCLTQAGYVGEDVESLLFKLYQAAGQDLEATERGIIYIDEIDKLSKR-ESGSV-RDVSGEGVQQALLKMLEGNVVNVPKAGGRKNPRGEHVQIDTTDILFICGGAFAGLEGVIARRVSQASIGFGASL 384
            L+ R IYEGL +YVIGQ+ VK  LAVGVH HY RL++ E  QAR+ AEAA A       KH A +   R G        G T   +     DMD    S    R L EEI + +  N + +  TS   +       +  +         ++ HH    + +    +E VEL+K+N++++GPTGSGKTLLAKTLA+L  VP+V+ DATCLTQAGYVGEDVES+LFKLYQAA  +LEAT+RGI+YIDEIDK++++ E+ S+ RDVSGEGVQQALLK+LEG++VNVP+ GGRKNPRGEH+ IDTT+ILFICGGAFAGLE  + RR S++SIGFGA +
Sbjct:  232 LTWRSIYEGLNEYVIGQDKVKKTLAVGVHNHYKRLHALELLQARKEAEAACA-------KHNASSQHPRAG--------GVTRQHV-----DMDDPRLSNIGRRLLLEEIYSGSDKNDAEMPPTSKQHASEETAEVTKTTETTHTHATRLQ-HHSMGDKLQ---YLEGVELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQAANYNLEATQRGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPRGEHITIDTTNILFICGGAFAGLEKQVTRRTSRSSIGFGAQM 541          
BLAST of EWM25075.1 vs. NCBI_GenBank
Match: gi|953504040|emb|CEG35141.1| (atp-dependent clp atp-binding subunit [Plasmopara halstedii])

HSP 1 Score: 302.368 bits (773), Expect = 1.560e-92
Identity = 173/334 (51.80%), Postives = 217/334 (64.97%), Query Frame = 0
Query:   55 RVLSPREIYEGLEKYVIGQEDVKTGLAVGVHAHYLRLYSKE--QARQAAEAAEAANGQRKRKHAAPALAAREGDTMTVYHNGKTSSLILSEPGDMDTASGSVHRFLREEILNAASGNPSSLSSTSNTSSGNGNDPSSSPSFPNARKGMTIRLHHDPRRRTRPRPSVEPVELEKSNILMLGPTGSGKTLLAKTLAKLLDVPLVLTDATCLTQAGYVGEDVESLLFKLYQAAGQDLEATERGIIYIDEIDKLSKR-ESGSV-RDVSGEGVQQALLKMLEGNVVNVPKAGGRKNPRGEHVQIDTTDILFICGGAFAGLEGVIARRVSQASIGFGASL 384
            RVL+PREIY GL +YVIGQ+ VK  LAVGVH HY RL++ E  QA++ AEA+         KH A +  +R                          AS    RFL EEI    SG+      + N           + S  + R         +P         +E VEL+K+N++++GPTGSGKTLLAKTLA+L  VP+V+ DATCLTQAGYVGEDVES+LFKLYQAA  +LEAT+RGI+YIDEIDK++++ E+ S+ RDVSGEGVQQALLK+LEG+ VNVP+ GGRKNPRGEH+ IDTT+ILFICGGAFAGLE  +  R S++SIGFGA +
Sbjct:  221 RVLTPREIYNGLNEYVIGQDKVKKTLAVGVHNHYKRLHALELLQAKKEAEASCV-------KHNAGSQHSR--------------------------ASTIGRRFLLEEIY---SGSEKVAEVSQNLKEDEMATTPETTSSTHTRA--------EPSTSNDKLQYLEGVELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQAANYNLEATQRGIVYIDEIDKITRKSENVSIARDVSGEGVQQALLKILEGSTVNVPEKGGRKNPRGEHISIDTTNILFICGGAFAGLEKQVTHRSSRSSIGFGAQM 510          
The following BLAST results are available for this feature:
BLAST of EWM25075.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106712|gb|EWM25075.1|0.000e+0100.00atp-dependent clp protease atp-binding subunit [Na... [more]
gi|970654597|gb|KUF92890.1|2.374e-9953.71ATP-dependent Clp protease ATP-binding subunit Clp... [more]
gi|675201991|ref|XP_008909880.1|1.956e-9753.71ATP-dependent Clp protease, ATP-binding subunit Cl... [more]
gi|301118793|ref|XP_002907124.1|2.290e-9753.87ATP-dependent Clp protease ATP-binding subunit clp... [more]
gi|568042950|gb|ETM40261.1|2.345e-9753.71ATP-dependent Clp protease, ATP-binding subunit Cl... [more]
gi|566017367|gb|ETI40278.1|3.297e-9753.71ATP-dependent Clp protease, ATP-binding subunit Cl... [more]
gi|1214697327|gb|OWZ10628.1|1.864e-9654.46ATP-dependent Clp protease [Phytophthora megakarya... [more]
gi|695391535|ref|XP_009520055.1|2.809e-9553.43hypothetical protein PHYSODRAFT_554819 [Phytophtho... [more]
gi|301091465|ref|XP_002895917.1|1.766e-9352.99ATP-dependent Clp protease ATP-binding subunit clp... [more]
gi|953504040|emb|CEG35141.1|1.560e-9251.80atp-dependent clp atp-binding subunit [Plasmopara ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5626rna5626Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications