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Properties
| Property Name | Value |
|---|
| Product | atp-dependent clp protease atp-binding subunit |
| Orig transcript id | gnl|cribi|Naga_100098g23.5269.mrna |
| Orig protein id | gnl|cribi|Naga_100098g23.5269 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:437795..440638 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5626 ID=rna5626|Name=rna5626|organism=Nannochloropsis gaditana|type=mRNA|length=3560bp
TGTGCAGGGTACTTTGGTCTGCCCTGGCAATGTGCTGTGACGAGGTGGTT
ATTTTCGGAGCTCCTTCAACTATTTGCCCAGCTCAGTAGCTGCTGTCCTC
TTGCTGCTACCGGTCTTGCCATCGAGCCAGCCATTATAGCTTGTACAGGG
CTCCCAGGGCACTGTCTCCAGACAGGAAAGCGAGTCTTAAGAACATTCGG
ATACCACAGGGTACATTTAGAGCGCAAAGTGCCATGTGGTCACCTGCTCG
TGGAGGGACTTTGCTGGCTAGACTGCTTCTCCTGGTGGCTGCTGTTGAAG
CATTTCGGATTTGGCGTCCAAGAGTGCTCAATCGTGCGGCCCGGGGAGAC
CAATTTAGAAGATGCTGTTCTAGTAAACGCCATTATCTCCCTTCGACCGC
TGCCCTCGCGCTTCGACCTTCCTCTTCCGCAAGCGTGCAGGGTGCAGCGG
AGGGAAGTGAGATGAAGGAACGGATTCGGGCGTCAGTCCCCCTGTCGGAC
GTGATCAAGCAGCATGTGGACTTGGATGAGAAAGGGGACGGGCAATGGAT
GGGGTGTTGTCCTTTCCACGACGACAAAAGTCCCAGCATGAGCGTGAGCG
ATGACAAGGGCTTGTACCACTGCTTTTCCTGCGGTGCTGGCGGTGATATT
TTCAGCTTTGTGTCCAATATAGGAGGCCTTTCATTCCCCGAGGCTATGGA
ACTCCTGGCAGATGAAGCCGGCATCGATTTAGTTAAAGAAGGATACGGCC
AGGGCGGTGGCAAAGGGGCTTCAGGAGCGACCAAGGAAAGCCATGCCCGC
CTGCACCAAGCCCTGGAGGCAGCGGGCGAATACTACGCATCCATGCTCTT
GGAGGCATCCGCAGGGCCAGCGCGCACGCACTTGCAGGAGCGGGGCTTTA
GCGCGGGCCTTGCCTCGGACTTCGGGTTGGGTTATGCCCCCGTGCGTCCC
GGCGGCCTGCTCCGACATCTGGGTCCGTTGAAGCTCAGCCGCGAGGAGCT
GGTCAAGTCTGGCCTTTTCAGTCCCCGAAGCTTGGACAACCCGTCGCCTT
TCGACCGTCTGAGCGGGCGTTTGATAATTCCTATCCGGAACGCGCGCGGA
CAAATGGTGGCGTTCGGAGGGCGGTTGCTGGACGAGGGGCCGCTGGCCAA
GTACTTGAACACCCCCGAGACGCCCGTCTTCAAAAAGAGGAACCTTCTCT
TCGGGGCCCATGTGGCCCGGGCCGCGATTCGCGAGAAAGGGACGGCGCTG
GTAGTGGAAGGGTACTTTGACGTGATGGCTTTGCACGGAGCGGGGCTGCG
GCATGCAGTGGCGTGCATGGGCACCGCCGTGACGGGGGACCATGTGAAGA
CTTTGCAGAATGCTTTGCCCTCGGGGGGTGGCACCTTGGTTTTGGTGCTG
GACAGGGATAAGGCGGGCCAACGCGCGGCGGCTCGGACGTGTCGGGAGCT
CCTCCTGCCCCTGGAGGCGGAGGGTCGTCTCGGCGGCCTCCATGTCAAAG
TGGCCCAGCTCCCGGAGGGCTCGGGGGACCCGGACGACTTGCTGCGGGCG
TATGCAGCCGGGTGGGGGCAGGCCCAGGCAGGCGCCATGTTCGAACGGGA
GGTGGTGAACAAGGCGATGCTCTGGAAAGAGTGGTATGCGCGGCTCTTGA
TGGAAGAAGGAGGGGAGGTTGGGGTCGGTAAAGCGGGGGCTAGCGCCGGG
GGCCCGCATGCGAGCCGAGGGGACACAGCGGCCTTCTCGAGACGAAGCGA
GGCGTTGACGGACTTCTTGGCGCGTCTTCCCGCCACGCAACAAGCAGACC
GGACGTTCCTGTGTTCATTGCTTGCCCGTGAAGCCTTTCCTTCGGACGAG
CCCTTGAGAGCGCGGGTGACCTCCGACTTGCTGCAGCAGTGCGACGAGAA
ACACAGCGCCTACAAGGCGCGGGAGACAGAGCGGGCTCGGCAACAGCAGC
ATGAGCAGCAGCTTAAGCAGCAGCAACAGAAGCTACAGCAGCCACAGAGA
CTGCAGCAGTCAAAGGAGGAACCGGCTCCGCGGCTCCAACAGACGCAACC
ACCCGGGCGGCAACAGCCCCAATACCCACACCGGCCCCCGCAGCGGCTGA
CGAACCTACCAGCTCCTCAGCCGTCTTCTGCACCAGTAGCACGGCCTCAA
AGCCAGCAGTCGCAGCAGTCATGGGCTCAGTATACCCCACTCAAGCAAAC
CGGCAGGACACCTGCCCCTGAGAGGCAAGGGGGGGAGGAGACCCGTAGCT
GGGACGAGCACAGGGTTTCCAGGCCGTCATATACCTCGTCCACCCTCCAA
GGCTCGGCTTTCTCATCGCCCCCTTCCTCCTTTGGCGCCCCTGGGCTGGG
CGACGCGCGGTCCCTCCACGCGAGCAGTTTGATATCGACCGCGCAAGGAG
TCTCCGCGAGCCGCCCGAGGCCTCCGCCTCAAAAGGCTGCACCCCAAGCC
ACCCCCCTCCCGTCCTCCCCGCCTCCATCCTCGTTCAACGAGGAAGATAG
CAAGGCCATTTTCATCTACGAACAGTCCCTGATCGAGCTCCTGATAGCTG
ACCCGCGCGCCCGCGCCCGCGTGCGCGACTTCCTCTGGTCAACCGTGGAC
GGACTGGGCCTGCACGAGCAGCAGCCCCCGGAAGCGCAGCAGCTTATGCT
GTCCACGCACTCCCACCAACTTCTCTTGGACTGGCTCATGCAGGCGGATG
CCCGGACCCACAGGTCCTCCTTGTTGTCCTTTCCCCCTCTCAGTCAGAAC
CCAGCCTCAAGCGTCGCGCGGCTAAAGCAGCAGTTTGAGATGGATGTGCC
GGCATTTCCCGAGCTGCTCTCGTACTTTGACAGAAGTCTGGAGCGAGAGC
GGGTGCCTCACAGCATGGATGACCTCCAGAGGATCCTGCGGGGGGCCCTG
GCGTTCCTGGTGAACGTGACCGTGGCCAGGCGCGTGGAGGAGGAAACTGA
ATTTTGGCAACGGCGACTTCTGCATTTGGAGGCGCAAAGGGAAGGCAGCA
TGGCCAGCAGCAAAGGCCATGCCATGATTGCTCCGCCCCTTCGTCCTGAA
GCGACCGCGTCTTCACAGGAGAGGTACCCGTATACTCGAGGGGTGGAGGA
ACAGCGCCAAGAAAGAAGATACTTCCAGGGCGCTGAACCCCGAGCACCCT
ACCAACGGGAAATAAGCGGAGCAATGTCTCAGTCTTCTTGGCAGCACCGA
TCACAAACCCTGCAGCAGCAAGCACAGCTGCAACAGGAACGGCCCCCCTC
CCTGGAGGTCCGCCTGCAGCAGAAAGCGCATGAGCAACGGGGCCGGTGGC
CTTCGGAAACAGGAGAGGGTCTGAATAACTACTACAACAGCGTTTATGCA
CAAAGAGAAGCACAGGAAGCATATTTACAGTCGCAGCGGGCGCGCGAAAT
ACGCTTCGGCTCTTCCCTTCCCCCGATTGAGTCAAATCCGCCAGAGGCGC
GCGTCGGGCCTGCCCCAGGCCCTCCCAGATGATGGTGGTCCTGTTGAAAT
ATGACCGACTTTGTAACTAAACCACCGCATAATGAATAAGTAACTCACCT
TCAGGTATAT back to topprotein sequence of rna5626 >rna5626-protein ID=rna5626-protein|Name=rna5626|organism=Nannochloropsis gaditana|type=polypeptide|length=428bp
MWRPYAAAVARRCVKRPTWSAVCHGSPGGRTQNLSTSHPPTSTLSSAAVP
PKAFRVLSPREIYEGLEKYVIGQEDVKTGLAVGVHAHYLRLYSKEQARQA
AEAAEAANGQRKRKHAAPALAAREGDTMTVYHNGKTSSLILSEPGDMDTA
SGSVHRFLREEILNAASGNPSSLSSTSNTSSGNGNDPSSSPSFPNARKGM
TIRLHHDPRRRTRPRPSVEPVELEKSNILMLGPTGSGKTLLAKTLAKLLD
VPLVLTDATCLTQAGYVGEDVESLLFKLYQAAGQDLEATERGIIYIDEID
KLSKRESGSVRDVSGEGVQQALLKMLEGNVVNVPKAGGRKNPRGEHVQID
TTDILFICGGAFAGLEGVIARRVSQASIGFGASLGGKGGGRGPIKAPCSR
KWSPTIWSSLASSRSWWGGCRRSCTRKA back to topmRNA from alignment at CM002466.1:437795..440638+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5626 ID=rna5626|Name=rna5626|organism=Nannochloropsis gaditana|type=mRNA|length=2844bp|location=Sequence derived from alignment at CM002466.1:437795..440638+ (Nannochloropsis gaditana)
CAGGGGGACTGACGCCCGAATCCGTTCCTTCATCTCACTTCCCTCCGCTG
CACCCTGCACGCttgcggaagaggaaggtcgAAGCGCGAGGGCAGCGGTC
GAAGGGAGATAATGGCGTTTACTAGAACAGCATCTTCTAAATTGGTCTCC
CCGGGCCGCACGATTGAGCACTCTTGGACGCCAAATCCGAAATGCTTCAA
CAGCAGCCACCAGGAGAAGCAGTCTAGCCAGCAAAGTCCCTCCACGAGCA
GGTGACCACATGGCACTTTGCGCTCTAAATGTACCCTGTGGTATCCGAAT
GTTCTTAAGACTCGCTTTCCTGTCTGGAGACAGTGCCCTGGGAGCCCTGT
ACAAGCTATAATGGCTGGCTCGATGGCAAGACCGGTAGCAGCAAGAGGAC
AGCAGCTACTGAGCTGGGCAAATAGTTGAAGGAGCTCCGAAAATAACCAC
CTCGTCACAGCACATTGCCAGGGCAGACCAAAGTACCCTGCACACGTAGG
ATAAAGATGTATGACGAGCGTGAGTGAAGAGGGCCTGACAGTCGTGGTCG
TCGAGAGTGAGACAGTGGAAGCGGAAGGGcctctctccttgttctCGTCT
CGCTGAAGACGTGCCACCCCAGGCCAGAATTCCCGCTATCCACCCGCGGC
ACCTGGAGCCGGTCTCAGGTCCTAACTAGAATGGTTGATCGGGAACTGGA
AACAATCCAAGCTGTGCTACGCGCTAGGGGTGTCGAGCAAGCTAGGTATT
CAATCAATAGGATGAAATTTGTGGCCTCCGAAACCGCGCGGGGGCTCGGA
CTCATTGCCATGttgttcctttccccctctcagGACGTGATATTTTTACA
GGCAACGGGCGCACACTCACAAGCGGGCGCACGCCGTCGATAGCATCAAT
ATAACACGCGGCAGGGGGATGTGGAGGCCCTACGCCGCGGCAGTGGCACG
CCGTTGCGTCAAGCGTCCGACATGGTCTGCAGTCTGTCATGGCAGCCCCG
GGGGCAGAACCCAGAATTTGAGCACTAGCCATCCCCCCACATCAACATTG
TCCTCCGCGGCGGTCCCACCTAAAGCGTTCCGGGTCCTTTCGCCACGTGA
AATTTACGAGGGTTTGGAAAAATACGTGATCGGGCAGGAGGACGTAAAGA
CCGGCCTGGCGGTAGGTGTCCATGCCCATTATTTGCGTCTTTATAGCAAA
GAGCAAGCAAGGCAGGCAGCCGAGGCCGCGGAGGCGGCTAACGGGCAACG
GAAAAGAAAACATGCGGCGCCTGCATTGGCGGCTCGAGAGGGCGACACCA
TGACAGTGTACCACAACGGGAAGACTAGCAGCCTGATCCTTTCCGAGCCA
GGAGACATGGACACGGCTTCGGGCTCCGTCCATCGATTTTTGCGCGAAGA
GATCCTCAACGCCGCCAGCGGAAACCCGTCCTCGCTGAGCTCTACCTCGA
ATACGTCTTCTGGGAACGGCAacgacccctcctcctccccctcctttccc
aatGCCCGCAAAGGGATGACCATCCGCCTGCACCATGACCCGCGGCGGCG
CACTCGCCCCCGGCCCAGCGTGGAGCCGGTAGAGCTGGAGAAGTCTAATA
TCCTCATGCTCGGGCCCACGGGGAGCGGAAAGACGCTGCTGGCTAAGACG
CTGGCCAAGCTCCTGGACGTGCCCCTGGTCCTGACGGACGCCACCTGCCT
GACTCAGGCCGGCTacgtgggcgaggacgtggagtcCCTGCTCTTCAAGC
TCTACCAAGCGGCCGGGCAGGATttggaggcgacggagcgGGGTATCATC
TACATCGACGAGATCGACAAGCTGTCGAAGCGGGAGAGTGGGAGCGTCCG
CGATgtgtcgggggagggcgtgcaacAGGCCTTGCTGAAGATGCTGGAGG
GGAACGTGGTGAATGTGCCCAAGGCCGGGGGCCGGAAGAACCCGCGCGGG
GAGCACGTGCAGATCGACACCACGGACATCCTCTTCATCTGCGGCGGGGC
CTTCGCGGGCTTGGAAGGGGTGATCGCCAGAAGGGTGAGCCAGGCCTCGA
TCGGGTTCGGGGCCAgcctgggggggaagggggggggcaggggaccGATC
AAGGCGCCTTGTTCGAGAAAGTGGAGCCCGACGATCTGGTCCAGTTTGGC
GTCATCCCGGAgctggtggggaggttgccgCAGATCgtgagtgggaggga
gaggtcgtgggtggggggcagggggaaggggggggtagTAAGAAAGCTTG
CCCTGGCGCGTCGGTATCAGGGATGCTCACagttctcttccctcccgtac
CCTCACCAACTTCTCAGCTGCACACGCAAAGCCTGACGTTCGAGCAGATG
ATCCGCATCCTGACCGAGCCCAAGCAGGCGCTGGTGAAGCAgtacgcctt
cctcttcgccatggaggacgtggcttTCCACGTCACGACCCGGGCGCTCG
GCTGCGTGGCTCGGATGGCGCTGGAGAAAaagacgggggcgaggggccTC
CGAAGCATCCTCGAGCAGGCGCTGAAAGAGAGCATGTACCTGGTTCCCGA
CGACCAGGACGTGAACGCGGTGGTCCTGGACGCGCGgcccgtgggggagg
gcgagacggaggcgttggagtaagtgggaggggaagggcgggcggagata
gcggggaggagcagaagtGTCAGAGGCTTGGGAggtcgtggagggcggga
aggggcatgCAAAGCGCCAGATGTATTGCTGAGAGGGCGCGCTCACAGGG
CCGTGCACACACGCGACAGGGTCCTTCTCGTccgaggagaggagacgcTT
GAGAGCTTCCTGcaggccagggaggcggaaggcctgggaggggg back to topCoding sequence (CDS) from alignment at CM002466.1:437795..440638+ >rna5626 ID=rna5626|Name=rna5626|organism=Nannochloropsis gaditana|type=CDS|length=2574bp|location=Sequence derived from alignment at CM002466.1:437795..440638+ (Nannochloropsis gaditana)
ATGTGGAGGCCCTACGCCGCGGCAGTGGCACGCCGTTGCGTCAAGCGTCC
GACATGGTCTGCAGTCTGTCATGGCAGCCCCGGGGGCAGAACCCAGAATT
TGAGCACTAGCCATCCCCCCACATCAACATTGTCCTCCGCGGCGGTCCCA
CCTAAAGCGTTCCGGGTCCTTTCGCCACGTGAAATTTACGAGGGTTTGGA
AAAATACGTGATCGGGCAGGAGGACGTAAAGACCGGCCTGGCGGTAGGTG
TCCATGCCCATTATTTGCGTCTTTATAGCAAAGAGCAAGCAAGGCAGGCA
GCCGAGGCCGCGGAGGCGGCTAACGGGCAACGGAAAAGAAAACATGCGGC
GCCTGCATTGGCGGCTCGAGAGGGCGACACCATGACAGTGTACCACAACG
GGAAGACTAGCAGCCTGATCCTTTCCGAGCCAGGAGACATGGACACGGCT
TCGGGCTCCGTCCATCGATTTTTGCGCGAAGAGATCCTCAACGCCGCCAG
CGGAAACCCGTCCTCGCTGAGCTCTACCTCGAATACGTCTTCTGGGAACG
GCAacgacccctcctcctccccctcctttcccaatGCCCGCAAAGGGATG
ACCATCCGCCTGCACCATGACCCGCGGCGGCGCACTCGCCCCCGGCCCAG
CGTGGAGCCGGTAGAGCTGGAGAAGTCTAATATCCTCATGCTCGGGCCCA
CGGGGAGCGGAAAGACGCTGCTGGCTAAGACGCTGGCCAAGCTCCTGGAC
GTGCCCCTGGTCCTGACGGACGCCACCTGCCTGACTCAGGCCGGCTacgt
gggcgaggacgtggagtcCCTGCTCTTCAAGCTCTACCAAGCGGCCGGGC
AGGATttggaggcgacggagcgGGGTATCATCTACATCGACGAGATCGAC
AAGCTGTCGAAGCGGGAGAGTGGGAGCGTCCGCGATgtgtcgggggaggg
cgtgcaacAGGCCTTGCTGAAGATGCTGGAGGGGAACGTGGTGAATGTGC
CCAAGGCCGGGGGCCGGAAGAACCCGCGCGGGGAGCACGTGCAGATCGAC
ACCACGGACATCCTCTTCATCTGCGGCGGGGCCTTCGCGGGCTTGGAAGG
GGTGATCGCCAGAAGGGTGAGCCAGGCCTCGATCGGGTTCGGGGCCAgcc
tgggggggaagggggggggcaggggaccGATCAAGGCGCCTTGTTCGAGA
AAGTGGAGCCCGACGATCTGGTCCAGTTTGGCGTCATCCCGGAgctggtg
gggaggttgccgCAGATCCTGCACACGCAAAGCCTGAATGTGGAGGCCCT
ACGCCGCGGCAGTGGCACGCCGTTGCGTCAAGCGTCCGACATGGTCTGCA
GTCTGTCATGGCAGCCCCGGGGGCAGAACCCAGAATTTGAGCACTAGCCA
TCCCCCCACATCAACATTGTCCTCCGCGGCGGTCCCACCTAAAGCGTTCC
GGGTCCTTTCGCCACGTGAAATTTACGAGGGTTTGGAAAAATACGTGATC
GGGCAGGAGGACGTAAAGACCGGCCTGGCGGTAGGTGTCCATGCCCATTA
TTTGCGTCTTTATAGCAAAGAGCAAGCAAGGCAGGCAGCCGAGGCCGCGG
AGGCGGCTAACGGGCAACGGAAAAGAAAACATGCGGCGCCTGCATTGGCG
GCTCGAGAGGGCGACACCATGACAGTGTACCACAACGGGAAGACTAGCAG
CCTGATCCTTTCCGAGCCAGGAGACATGGACACGGCTTCGGGCTCCGTCC
ATCGATTTTTGCGCGAAGAGATCCTCAACGCCGCCAGCGGAAACCCGTCC
TCGCTGAGCTCTACCTCGAATACGTCTTCTGGGAACGGCAacgacccctc
ctcctccccctcctttcccaatGCCCGCAAAGGGATGACCATCCGCCTGC
ACCATGACCCGCGGCGGCGCACTCGCCCCCGGCCCAGCGTGGAGCCGGTA
GAGCTGGAGAAGTCTAATATCCTCATGCTCGGGCCCACGGGGAGCGGAAA
GACGCTGCTGGCTAAGACGCTGGCCAAGCTCCTGGACGTGCCCCTGGTCC
TGACGGACGCCACCTGCCTGACTCAGGCCGGCTacgtgggcgaggacgtg
gagtcCCTGCTCTTCAAGCTCTACCAAGCGGCCGGGCAGGATttggaggc
gacggagcgGGGTATCATCTACATCGACGAGATCGACAAGCTGTCGAAGC
GGGAGAGTGGGAGCGTCCGCGATgtgtcgggggagggcgtgcaacAGGCC
TTGCTGAAGATGCTGGAGGGGAACGTGGTGAATGTGCCCAAGGCCGGGGG
CCGGAAGAACCCGCGCGGGGAGCACGTGCAGATCGACACCACGGACATCC
TCTTCATCTGCGGCGGGGCCTTCGCGGGCTTGGAAGGGGTGATCGCCAGA
AGGGTGAGCCAGGCCTCGATCGGGTTCGGGGCCAgcctgggggggaaggg
ggggggcaggggaccGATCAAGGCGCCTTGTTCGAGAAAGTGGAGCCCGA
CGATCTGGTCCAGTTTGGCGTCATCCCGGAgctggtggggaggttgccgC
AGATCCTGCACACGCAAAGCCTGA back to top
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