EWM25076.1, cds5595 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM25076.1
Unique Name	cds5595
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002466.1:403795..403852 -
Alignment location	CM002466.1:403344..403639 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM25076.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100098g6.5270.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:403795..403852 -
CM002466.1	supercontig	CM002466.1:403344..403639 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

[Close]

BLAST of EWM25076.1 vs. NCBI_GenBank
Match: gi|585106713|gb|EWM25076.1| (hypothetical protein Naga_100098g6 [Nannochloropsis gaditana])

HSP 1 Score: 246.514 bits (628), Expect = 6.382e-83
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0

Query:    1 MPADPRNLMPASRQYWRRLSCLQIAVWNDLLEGTFAKDLIKINTEKSEGDVCYHSFSSNERLNGEKGRLRRGDDHIVLYEIGMQRPGQPGRCRTFPSNAEKVSKACGPLYKKVKSLG 117
            MPADPRNLMPASRQYWRRLSCLQIAVWNDLLEGTFAKDLIKINTEKSEGDVCYHSFSSNERLNGEKGRLRRGDDHIVLYEIGMQRPGQPGRCRTFPSNAEKVSKACGPLYKKVKSLG
Sbjct:    1 MPADPRNLMPASRQYWRRLSCLQIAVWNDLLEGTFAKDLIKINTEKSEGDVCYHSFSSNERLNGEKGRLRRGDDHIVLYEIGMQRPGQPGRCRTFPSNAEKVSKACGPLYKKVKSLG 117

The following BLAST results are available for this feature:

BLAST of EWM25076.1 vs. NCBI_GenBank

BLAST of EWM25076.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585106713\|gb\|EWM25076.1\|	6.382e-83	100.00	hypothetical protein Naga_100098g6 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna5609	rna5609	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications