|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100098g6.5270.mrna |
| Orig protein id | gnl|cribi|Naga_100098g6.5270 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:403344..403852 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5609 ID=rna5609|Name=rna5609|organism=Nannochloropsis gaditana|type=mRNA|length=2793bp
ATGGCGGAGAACAAGGAGTCACGGAACCGGCAAATACCCATAGTGTGTCC
GGGTCACAGCCGGCCTTTGGCGGGTGTGGAGTACAGCCCGGTGACTCCTG
ACGGCGTCTTCTTGATCAGCGCCTGCCACGACAAGGAGCCCATGCTGCGT
AATGGGGAGACGGGGGACTGGATCGGGACATTTAAAGGGCACAAGGGTGC
GGTCTGGAGTGCCAAGCTGAACAAAGACGCTACTTTCGCCCTGACCGGGT
CCGGCGACTTCAGCGCCCGGGTCTGGGATGCGATCACCGGCGCGGAGCTG
GAGCACTTTCCTCATAAGCATATAGTCAGGACCGTGGAGTTTGCGCCTGA
CTCCCGCCGTTTCGTCAGCGGGGGCAACGAAGGAAAATTGCGGGTTTACG
ACCTTATGGAGCCCTCTGCCCCACCCATGACGATGGACCTTCCCAAGTCA
GGGACCACGTTCTCCAAGGCGGTCTGGGACCAGAGCGATCCTCAGCGAGT
CCTCACGGGCTCCAGCGATGGGAAGGTGCGGGCCTGGGATTTGAGGGCCC
GAAAGGAAACGCAGGTGGCGGAAGTGCAAGGAAACGTGATGGATTTGGAG
CTCTCTCCGAAAGTGGGTGATATCCTCACAGTGTGCGCTGGTGACAAGGT
CACGTTTCTGGACACTGCGACCCTCCTGCCTATCAAGTCCTTTCCCATGC
CCATGCACTTTCGAGAAGAAGGCGGTGCCTCCCTCCATCCGGACCGGCAG
CTTTTTATTGCGGGAGGCTCAGATTTGTGGGTGCGCGTATTTGATTACAA
TACGGGCGCAGAGCTCGAATGTCACAAGGGTCATCATGGCCCCGCAGTGA
AGACGGGACTGTGCGCATTTGGGCAACACAAGTGGATACGTAATGGAGGC
TTGCACCACACATGGTTAAGACGGTCGGGTTCTCATTCTCCTCTCTTGTT
ATCTCCCGCGTGGCCCATGTCATGTCGTCGTGTTAATAGCAGCCGAATAA
GGTTCCTCCTTTTTGAGCCAACGCCCGTTATCGACTTTGTAGCATGGATG
ACATTACCCAAAGAATTAAAAAGAGCAATAGAAATTAAAGGGGCACGGTC
TCCGACTTGGGTCTCTTTCTGGTGTCACTGGTCGACACGCGAGTGGAAGC
GCGTTTGGCTGGCAAGGTTTTTACAAATGTGGCCTTTGGGTTTTCCGGTT
GTGCGCCTTATGGCGGGTGTCGGTGTCCTTCTCTTACAGTCTGGTTGTTC
TTCATCCGCTACACTGACCAAGGCCGCTTTTTTGGCACCCGCGACGGGTA
TCAATGTAAAGCGAAGCAGTTTTTACGGTTCTAAGACAAGTTTGGCTGCA
GATGCAGCGTCGGATGCGGCTTCGCTGTCCCGTGATATTCCAAACAGCCG
GAGTTTGTATCAGCAGCAGCAGCTCGAGCAGCAACGTGCTCTGCATGAGC
AGCTAGCCGCAATCCCGGATTCGGGTTCCCCATGCCGCATCAAGGTGATT
GGTGTGGGAGGTGGTGGGAGTAATGCCGTGAACCGGATGGTGACCCAGGA
CATCACGGGTGTGGAATTCTGGGCGATTAACACGGACGCTCAGGCCCTGG
CCAAATCGAAGGTCCCGTACAAGCTGAATATTGGGAACCACATCACGCGA
GGTCTCGGGGCCGGGGGCAAGCCTTTAGTGGGTCGGAACGCGGCGGAAGA
ATCTCGAGAGGAGATCGCAGAGGCGGTCGCGGGTGCAGACCTGGTATTTG
TGACAGCAGGCATGGGCGGAGGGACAGGATCCGGGGCGGCGCCGGTGGTG
GCCGAGGTGGCGAAAGACCTGGGTATCCTGACGGTGGGCGTGGTCACCCG
GCCCTTCGGCTTCGAGGGTCGCCAACGCATGGCGCAGGCCAAGGCTGCCA
TTCAAGAGATGCAGAGCAAGGTCGACACCTTGATCACCGTCTCGAACGAC
CGGTTGCTCCAGATCGTTCCTGACAATTTCCCACTCACGGACGCCTTTCT
GGTCGCAGACGAGGCGCTCCGAGACGGCGTGGTGGGTATCTCGGACATCA
TCGTCAAGCCAGGCCTCATCAACGTGGACTTTGCGGACGTGCGGGCGGTC
ATGCAGAACGCGGGCACGGCCCTGATGGGCACCGGGTGGGGGAAGGGAAA
GACGAGGGCACAGGACGCAGCCGTCTCGGCCATCAAGTCGCCTCTTTTGG
ATTTTCCCATCAAGAAGGCCAAGGGCATCGTTTTCAACGTGTGCGGAGGC
TCTGACTTGACTCTGGGGGAGATAAACGCGGCGGCGCAGGTGATCTACGA
GAATGTGGCGGAAGACGCCAACATCATCTTCGGGGCCGTGGTCGACGCGA
AGCTCAAGGATCAGGTCTCTATCACCGTCCTGGCCACGGGCTTCTCCCTC
AACCCCAACGCTAGCGAGGACAACCTCGACGACCTGCTCACCACATTGGA
CCAGCAGCTCTCAGGACCAGGCCGGCCGAAGGGGGCTGCCTCCCCCACGC
CCTCTTCCATGCAGCAATCTGCCTTCCCGACCCCAACCCCGCCTTCTCAA
CAACCCCCTCCGGTGTATGAGAAGACGTACAGCGAAGGAGGAACTCTTTC
GGAGATCGTAGACTTCCCCAGCACGTTTGAGTGGGGAGGTTGGAGACATC
CGCTCGGAGGTGAAGAGGTCCATGACCGGAAAGAAAAAATGGGGCTGATA
AAGCTGGAGATTGAATATGGATGGGAGCGAGGGAGGGAAGGAACCAGAGT
ACCTTTATTTATGCCTTGTTTATGTCTGTGTTACCTCCCGTGA back to topprotein sequence of rna5609 >rna5609-protein ID=rna5609-protein|Name=rna5609|organism=Nannochloropsis gaditana|type=polypeptide|length=117bp
MPADPRNLMPASRQYWRRLSCLQIAVWNDLLEGTFAKDLIKINTEKSEGD
VCYHSFSSNERLNGEKGRLRRGDDHIVLYEIGMQRPGQPGRCRTFPSNAE
KVSKACGPLYKKVKSLG back to topmRNA from alignment at CM002466.1:403344..403852- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5609 ID=rna5609|Name=rna5609|organism=Nannochloropsis gaditana|type=mRNA|length=509bp|location=Sequence derived from alignment at CM002466.1:403344..403852- (Nannochloropsis gaditana)
ATGCCCGCTGATCCTCGCAACTTGATGCCCGCTTCTCGACAGTACTGGCG
CCGACTTTGTTGATTTCTGTCTTCTTTCACACTGCGGCCTCGTTTGGTAC
TGGTTACCAATCTTTGCGGATATAAAAGGAACATTGTACGGTAAAATAAA
AGACCCTCAAATCAAACAATACACTGACCTCCTTTTGACCGTTCTTTCTT
TAACGAACCCCAGCGTGTCTTCAAATTGCTGTCTGGAACGACTTATTGGA
GGGCACATTTGCAAAAGACCTGATAAAAATCAATACTGAAAAGTCCGAGG
GAGATGTCTGCTACCACTCGTTCTCGTCTAATGAGAGACTAAATGGAGAA
AAGGGCAGGTTGAGACGAGGAGACGACCACATTGTGCTTTACGAAATCGG
CATGCAGCGTCCCGGTCAACCAGGTCGTTGTCGCACCTTCCCTTCTAATG
CAGAGAAGGTGTCGAAGGCTTGTGGGCCACTTTACAAAAAAGTAAAAAGC
TTAGGCTAG back to topCoding sequence (CDS) from alignment at CM002466.1:403344..403852- >rna5609 ID=rna5609|Name=rna5609|organism=Nannochloropsis gaditana|type=CDS|length=708bp|location=Sequence derived from alignment at CM002466.1:403344..403852- (Nannochloropsis gaditana)
CGTGTCTTCAAATTGCTGTCTGGAACGACTTATTGGAGGGCACATTTGCA
AAAGACCTGATAAAAATCAATACTGAAAAGTCCGAGGGAGATGTCTGCTA
CCACTCGTTCTCGTCTAATGAGAGACTAAATGGAGAAAAGGGCAGGTTGA
GACGAGGAGACGACCACATTGTGCTTTACGAAATCGGCATGCAGCGTCCC
GGTCAACCAGGTCGTTGTCGCACCTTCCCTTCTAATGCAGAGAAGGTGTC
GAAGGCTTGTGGGCCACTTTACAAAAAAGTAAAAAGCTTAGGCTAGATGC
CCGCTGATCCTCGCAACTTGATGCCCGCTTCTCGACAGTACTGGCGCCGA
CTTTCGTGTCTTCAAATTGCTGTCTGGAACGACTTATTGGAGGGCACATT
TGCAAAAGACCTGATAAAAATCAATACTGAAAAGTCCGAGGGAGATGTCT
GCTACCACTCGTTCTCGTCTAATGAGAGACTAAATGGAGAAAAGGGCAGG
TTGAGACGAGGAGACGACCACATTGTGCTTTACGAAATCGGCATGCAGCG
TCCCGGTCAACCAGGTCGTTGTCGCACCTTCCCTTCTAATGCAGAGAAGG
TGTCGAAGGCTTGTGGGCCACTTTACAAAAAAGTAAAAAGCTTAGGCTAG
ATGCCCGCTGATCCTCGCAACTTGATGCCCGCTTCTCGACAGTACTGGCG
CCGACTTT back to top
|