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Properties
| Property Name | Value |
|---|
| Product | transcription elongation factor spt5 |
| Orig transcript id | gnl|cribi|Naga_100098g3.5260.mrna |
| Orig protein id | gnl|cribi|Naga_100098g3.5260 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:392452..395726 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5606 ID=rna5606|Name=rna5606|organism=Nannochloropsis gaditana|type=mRNA|length=933bp
GTAACCTGACCATTTCTGTCGACCCCACGTTTTGCCACGCTAATTGCAGG
TGCGACACAGATGTTTGCCTGATTGCTGGAGAGAAGATGGCTCGAAATAC
TTCCGCCTCCGCCGCCTCTGCGGTGGAGGCCCGACAGGCGTTCTTACAGC
TTCTTATGAGCCGCAAGGTCATGACGCACAGTCAAGCAGCAAATGCACTT
GCCATGATTTCTGAGGAACTGAATGTGCAAGACCAGCTTGATGTTAAGTC
CTGTCTGGCCAATCTCAATAAGGAACTGCAGAATTGTAATCTGCAGATCC
GGGGAATGGTTCATCAAGACTCGGAGGCCTACGCCGTCGTGAATGTGCTG
AGCGATGATGTGTCGAAAATGCACGCGTCAAAAATGAAGGACTGGGAGAA
GGCCTATTTCAAGGAGGTAATCAAAGCCATTTGCGGGCGCGGTGGGAATT
TTGTCGAGGACGATGAACTGACAGCTCTCCGCGTACCGATTGGGGGTACG
GCAGCCTCCGTGCGGGAGAAAAGATCGGTGCTCTCCCTTTTGAGTGCGGA
GTTTTGGTTGCAGAGGGACAAGCACGGCCGTTTTGCCCTAGGCCCGCGCA
CTTTTCTTGAGCTGGACGATTTCGTGCGAGCGCATGAGATGGAAATGCCG
CAGGTCCTTTACTATTAGGGTCGAAATGGCATGCCACGAGTCAAATTTCC
GGATTGGATGTTTACCAAACATCTCAACTGGGGGACTGTGATTCTACTTT
CAACAAGAATGCGGGGGCGGAAAATTAGATTCGCCCCTCAATTCTGCTGC
CACCGAAAGCAATCAATGAAAGGCATATGATGTGTTTATTCTTGGCCTTG
TTTTTTTTTGTGGGTGATGATGATCAGGGCTCCAGGCTTCTGAACAGCGT
AAAGAAAGGGCAACATCAAAGAACGCAAGACTC back to topprotein sequence of rna5606 >rna5606-protein ID=rna5606-protein|Name=rna5606|organism=Nannochloropsis gaditana|type=polypeptide|length=943bp
MADSSSDEEVVVQKKRTEPLKGDEAGEVGNGEGREKDVVDDDAEEEDSDE
EEEEEAEEASGGKARGGQDEEEEDDDDESDADSDDSEADSRLRKGGRKRK
QRREAETSRGRAGKKSRRRDGRSRFLDQEAAVGGEEEEEEEDVESGDELT
EREAEKLRQETLYKPRTRTNFEDMLARDSDHQIEERFRAMARTSAHRTQD
FYEEASARQKGVTKQSLLPTPGVDTCMWRVKVKKNQEMPMVMSIMDMARR
MTAKKQRVGITAAIFAGTKGHVLIEARNEADASAAIRANSRFILSQRLEV
VEYRYMATSLAVSEKVAPRPLRDGQWVRFKRGLYKGDLARVMAILEGGSK
VVIEMVPRINYEDMARNPRAGNIYVVSAASRPGPKFFSASEAREHEVVLH
RGKIPGLNMPCDVACNLHYMNGYLVKEVKPESLQAENINASVEEVTKFGL
GALAEDDGRGHEERLQAAQREAEETQEQQRKNLRVFEQGDAVKVVAGELR
NLVCRVLGSDPTTGTVSVRPVNPNLGLPVKIELQASQLANHVEVGQHVKV
LDGLFAGETGMVQALLSHDEHGAPVPEPIVSVLTDGENKELRVRLGQVKE
SADVATGMSSLSGYSLHDMVCYGYQRFGVIVWLGRESVKVLDSSGVVQSV
PLGELQGNRNRRSHQAAAYDSMNNRMQVEDQVLVTDRGEHFQKRGAIKHI
LGSSLWILTKQETRNSGLFVVRTRAVTLQNLIRKNAAVTFNALHTGAPNP
TLQQHHGQRGFGGGPGGGRGGGRGGGRFGPRSNMDPLVGRVVRIKGKSEF
KGQTGKVRSVKDNVVFVDIESGTRPKTVRVPREAVAEDAPAVAGAAGGRA
GAEAYSLGTGTTPAWTYGRTPMHGGMTPMYGAATPMYGGATPALHSGGGQ
TPAYSGSQTPALYGGGGQTPRHEGAYTPRHEGAYTPRHQYQDG back to topmRNA from alignment at CM002466.1:392452..395726+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5606 ID=rna5606|Name=rna5606|organism=Nannochloropsis gaditana|type=mRNA|length=3275bp|location=Sequence derived from alignment at CM002466.1:392452..395726+ (Nannochloropsis gaditana)
AGGCTGCTTGTTCCACCCCGCTCggttcccaccctcctcaaaTAAATACT
CACACTGAGTTTTAAAACAGGATCATGGCGGATTCATCGTCGGATGAAGA
GGTGGTGGTtcagaaaaagaggacggAGCCTCTCaagggggacgaggcgg
gcgaggtcgggaatggggaaggaagggaaaaggatgtcGTCGACGACgat
gccgaggaggaggacagtgacgaggaggaggaggaggaggcagaggaggc
gtcGGGAGGCAAAGCACGGGGCGgacaggacgaggaggaggaggacgacg
acgacgaaaGCGACGCTGATAGCGACGACAGTGAAGCGGATTCGCGTCTa
cgcaaaggagggcggaagcggaagcaaaggagggaagcagagaCATCTCG
AGGACGTGCTGGTAAGAAATCCCGTCGTCGGGACGGTCGCAGCCGTTTTC
TGGACCAAGAAGCCgcggtgggtggggaggaggaggaggaggaggaggat
gtcgagTCGGGCGACGAGCTGACcgagcgggaggcggagaaactGCGACA
AGAAACCTTGTACAAGCCACGCACGCGAACAAACTTCGAGGACATGCTGG
CGCGTGACTCGGACCACCAGATCGAGGAGCGTTTCCGGGCAATGGCTCGC
ACGAGCGCCCACCGGACCCAGGATTTCTATGAGGAGGCCAGCGCCCGGCA
GAAGGGCGTGACCAAGCAGTCCCTGCTTCCCACCCCCGGCGTGGACACCT
GCATGTGGCGCGTGAAGGTGAAGAAGAACCAGGAGATGCCCATGGTCATG
AGCATCATGGACATGGCCCGGCGGATGACAGCCAAGAAGCAGCGGGTCGG
GATCACGGCCGCCATCTTCGCAGGGACCAAAGGACACGTCCTGATCGAGG
CCCGGAACGAAGCAGACGCTTCCGCCGCCATCCGCGCCAACTCCCGGTTC
ATCCTTTCCCAGcgcctggaggtggtggagtaCCGATACATGGCCACCTC
GCTGGCGGTCTCGGAGAAGGTGGCGCCCCGGCCCTTGCGGGACGGGCAGT
GGGTCCGCTTCAAGCGCGGGCTCTACAAGGGGGACCTGGCCCGCGTCATG
GCCAtcctggagggcgggtcGAAGGTGGTGATCGAGATGGTTCCGCGCAT
CAACTACGAGGACATGGCGCGGAATCCCCGCGCCGGGAACATCTACGTGG
TCagcgccgcctcccgcccgggGCCCAAgttcttctccgcctccgaggCC
CGCGAGCACGAGGTGGTCCTGCACCGGGGCAAGATCCCCGGTTTGAATAT
GCCCTGTGACGTGGCCTGCAACCTGCACTACATGAACGGCTACCTTGTCA
AGGAGGTAAAGCCGGAGTCGCTCCAGGCGGAGAACATCAACGCctcggtg
gaagaggtgacCAAGTTCGGCCTAGgggccctggcggaggatgatggaag
gGGCCACGAGGAGCGTTTGCAGGCGGCGcagcgggaggcagaggaaacgc
aggagcagcagcggaaGAACCTCAGGGTATTCGAGCAGGGGGACGCCgtc
aaggtggtggcgggcgagCTCCGGAACTTGGTGTGCCGAGTCTTGGGCTC
GGACCCCACCACAGGGACGGTCTCGGTGCGGCCTGTGAACCCGAACCTGG
GTCTGCCCGTCAAGATCGAGCTGCAAGCCTCCCAGTTGGCGAACCACGTG
GAGGTGGGCCAGCACGTGAAGGTGCTGGACGGGCTCTTTgcgggggagac
ggggatgGTGCAGGCCCTCCTGAGTCACGACGAGCACGGGGCGCCGGTGC
CGGAGCCCATCGTGTCGGTGTTGACGGACGGGGAGAACAAGGAGCTGCGC
GTGCGCCTGGGCCAGGTAAAGGAGAGCGCGGACGTGGCTACGGGGATGAG
CTCTCTGTCCGGGTACTCTTTGCACGACATGGTGTGCTATGGCTACCAAC
GGTTCGGGGTGATTGTCTGGCTagggcgggagagcgtgAAGGTGCTGGAC
TCCTCGGGGGTGGTTCAGTCCGTGCCCTTGGGGGAGCTGCAGGGGAACCG
AAACCGGAGGAGCCACCAGGCGGCGGCCTATGATAGCATGAACAACCGGA
TGCAGGTGGAAGACCAAGTGCTTGTCACGGACCGCGGGGAGCACTTCCAG
AAGCGCGGTGCGATCAAACACATCCTGGGTTCGTCGTTGTGGATCCTCAC
CAAGCAGGAGACGCGAAATTCGGGCCTCTTTGTCGTCCGCACGCGGGCGG
TCACGCTTCAGAATCTGATCAGAAAGAACGCAGCGGTTACCTTTAACGCT
CTGCACACCGGAGCGCCGAACCCGACGCTGCAGCAACACCACGGCCAAAG
AGGcttcgggggagggccggggggggggagaggagggggtcgaggggggg
gtcggTTTGGCCCCCGCTCCAACATGGACCCGTTGGTGGGGCGCGTGGTG
CGGAtcaaggggaagagcgagTTCAAGGGACAGACGGGGAAAGTCAGGAG
CGTGAAAGACAATGTGGTGTTTGTGGACATAGAGAGCGGGACACGACCCA
AGACGGTGCGGGTGCCGCgcgaggcggtggcggaggacgcgccGGCGGTG
GCAGgagcggcgggagggcgggcgggggcggaagcaTACTCCTTGGGCAC
AGGCACCACGCCCGCCTGGACGTACGGTCGCACCCCCATGCACGGCGGGA
TGACACCTATGTATGGAGCTGCGACACCCATGTACGGAGGGGCGACGCCG
GCGTTGCattcggggggggggcaaacgCCTGCTTACTCAGGCTCGCAGAC
GCCGGCTCTGTatgggggtgggggacaGACCCCGCGACACGAAGGGGCTT
ACACGCCCCGGCACGAGGGGGCCTACACCCCCCGGCATCAGTATCAGGAC
GGGTAGCGTTGGAACTGCCATGCGGAGGGTATGTATGGTACATGAAGAGA
CCTGCGAAGGCATTTTCGGGGGCTGACGGTTCGGATCAGGCATAAAACGT
GTGAAAGCAAATGTTTCAGAGACAATCTCATGCTTTGATTCAAATTGCTT
TCAGACACAAACACTATCTATATCATTTACATCATTCAACGGAGCTTTCC
AAGGAAGTGTGACTCGCCTCTGCCTCATCGTCGCATCAAGGCAAATTTGT
GGACTCGTTCCAAAATCTCGGGCAGGAAGGCATTCAAGCTTTCATTGATC
AAAGACAAAAAGAATAATTCTGCCTGCTCTGCGCTCAGATCAAGTCGAAa
tctctcctccactttgcCTAAGACC back to topCoding sequence (CDS) from alignment at CM002466.1:392452..395726+ >rna5606 ID=rna5606|Name=rna5606|organism=Nannochloropsis gaditana|type=CDS|length=2832bp|location=Sequence derived from alignment at CM002466.1:392452..395726+ (Nannochloropsis gaditana)
ATGGCGGATTCATCGTCGGATGAAGAGGTGGTGGTtcagaaaaagaggac
ggAGCCTCTCaagggggacgaggcgggcgaggtcgggaatggggaaggaa
gggaaaaggatgtcGTCGACGACgatgccgaggaggaggacagtgacgag
gaggaggaggaggaggcagaggaggcgtcGGGAGGCAAAGCACGGGGCGg
acaggacgaggaggaggaggacgacgacgacgaaaGCGACGCTGATAGCG
ACGACAGTGAAGCGGATTCGCGTCTacgcaaaggagggcggaagcggaag
caaaggagggaagcagagaCATCTCGAGGACGTGCTGGTAAGAAATCCCG
TCGTCGGGACGGTCGCAGCCGTTTTCTGGACCAAGAAGCCgcggtgggtg
gggaggaggaggaggaggaggaggatgtcgagTCGGGCGACGAGCTGACc
gagcgggaggcggagaaactGCGACAAGAAACCTTGTACAAGCCACGCAC
GCGAACAAACTTCGAGGACATGCTGGCGCGTGACTCGGACCACCAGATCG
AGGAGCGTTTCCGGGCAATGGCTCGCACGAGCGCCCACCGGACCCAGGAT
TTCTATGAGGAGGCCAGCGCCCGGCAGAAGGGCGTGACCAAGCAGTCCCT
GCTTCCCACCCCCGGCGTGGACACCTGCATGTGGCGCGTGAAGGTGAAGA
AGAACCAGGAGATGCCCATGGTCATGAGCATCATGGACATGGCCCGGCGG
ATGACAGCCAAGAAGCAGCGGGTCGGGATCACGGCCGCCATCTTCGCAGG
GACCAAAGGACACGTCCTGATCGAGGCCCGGAACGAAGCAGACGCTTCCG
CCGCCATCCGCGCCAACTCCCGGTTCATCCTTTCCCAGcgcctggaggtg
gtggagtaCCGATACATGGCCACCTCGCTGGCGGTCTCGGAGAAGGTGGC
GCCCCGGCCCTTGCGGGACGGGCAGTGGGTCCGCTTCAAGCGCGGGCTCT
ACAAGGGGGACCTGGCCCGCGTCATGGCCAtcctggagggcgggtcGAAG
GTGGTGATCGAGATGGTTCCGCGCATCAACTACGAGGACATGGCGCGGAA
TCCCCGCGCCGGGAACATCTACGTGGTCagcgccgcctcccgcccgggGC
CCAAgttcttctccgcctccgaggCCCGCGAGCACGAGGTGGTCCTGCAC
CGGGGCAAGATCCCCGGTTTGAATATGCCCTGTGACGTGGCCTGCAACCT
GCACTACATGAACGGCTACCTTGTCAAGGAGGTAAAGCCGGAGTCGCTCC
AGGCGGAGAACATCAACGCctcggtggaagaggtgacCAAGTTCGGCCTA
GgggccctggcggaggatgatggaaggGGCCACGAGGAGCGTTTGCAGGC
GGCGcagcgggaggcagaggaaacgcaggagcagcagcggaaGAACCTCA
GGGTATTCGAGCAGGGGGACGCCgtcaaggtggtggcgggcgagCTCCGG
AACTTGGTGTGCCGAGTCTTGGGCTCGGACCCCACCACAGGGACGGTCTC
GGTGCGGCCTGTGAACCCGAACCTGGGTCTGCCCGTCAAGATCGAGCTGC
AAGCCTCCCAGTTGGCGAACCACGTGGAGGTGGGCCAGCACGTGAAGGTG
CTGGACGGGCTCTTTgcgggggagacggggatgGTGCAGGCCCTCCTGAG
TCACGACGAGCACGGGGCGCCGGTGCCGGAGCCCATCGTGTCGGTGTTGA
CGGACGGGGAGAACAAGGAGCTGCGCGTGCGCCTGGGCCAGGTAAAGGAG
AGCGCGGACGTGGCTACGGGGATGAGCTCTCTGTCCGGGTACTCTTTGCA
CGACATGGTGTGCTATGGCTACCAACGGTTCGGGGTGATTGTCTGGCTag
ggcgggagagcgtgAAGGTGCTGGACTCCTCGGGGGTGGTTCAGTCCGTG
CCCTTGGGGGAGCTGCAGGGGAACCGAAACCGGAGGAGCCACCAGGCGGC
GGCCTATGATAGCATGAACAACCGGATGCAGGTGGAAGACCAAGTGCTTG
TCACGGACCGCGGGGAGCACTTCCAGAAGCGCGGTGCGATCAAACACATC
CTGGGTTCGTCGTTGTGGATCCTCACCAAGCAGGAGACGCGAAATTCGGG
CCTCTTTGTCGTCCGCACGCGGGCGGTCACGCTTCAGAATCTGATCAGAA
AGAACGCAGCGGTTACCTTTAACGCTCTGCACACCGGAGCGCCGAACCCG
ACGCTGCAGCAACACCACGGCCAAAGAGGcttcgggggagggccgggggg
ggggagaggagggggtcgaggggggggtcggTTTGGCCCCCGCTCCAACA
TGGACCCGTTGGTGGGGCGCGTGGTGCGGAtcaaggggaagagcgagTTC
AAGGGACAGACGGGGAAAGTCAGGAGCGTGAAAGACAATGTGGTGTTTGT
GGACATAGAGAGCGGGACACGACCCAAGACGGTGCGGGTGCCGCgcgagg
cggtggcggaggacgcgccGGCGGTGGCAGgagcggcgggagggcgggcg
ggggcggaagcaTACTCCTTGGGCACAGGCACCACGCCCGCCTGGACGTA
CGGTCGCACCCCCATGCACGGCGGGATGACACCTATGTATGGAGCTGCGA
CACCCATGTACGGAGGGGCGACGCCGGCGTTGCattcggggggggggcaa
acgCCTGCTTACTCAGGCTCGCAGACGCCGGCTCTGTatgggggtggggg
acaGACCCCGCGACACGAAGGGGCTTACACGCCCCGGCACGAGGGGGCCT
ACACCCCCCGGCATCAGTATCAGGACGGGTAG back to top
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