Naga_100098g3, gene5418 (gene) Nannochloropsis gaditana

Overview
NameNaga_100098g3
Unique Namegene5418
Typegene
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:392452..395726 +

Link to JBrowse

Properties
Property NameValue
Locus tagNaga_100098g3
Gene biotypeprotein_coding
GbkeyGene
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:392452..395726 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
SRP2295572021-06-30
GO annotation for N. gaditana B312020-04-08
PRJNA1747702019-07-03
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoL019ngnoL019Nannochloropsis gaditana (N. gaditana B-31)syntenic_region
ngnoL018ngnoL018Nannochloropsis gaditana (N. gaditana B-31)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01360NO11G01360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
rna5606rna5606-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
rna5606rna5606Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of rna5606

>rna5606-protein ID=rna5606-protein|Name=rna5606|organism=Nannochloropsis gaditana|type=polypeptide|length=943bp
MADSSSDEEVVVQKKRTEPLKGDEAGEVGNGEGREKDVVDDDAEEEDSDE
EEEEEAEEASGGKARGGQDEEEEDDDDESDADSDDSEADSRLRKGGRKRK
QRREAETSRGRAGKKSRRRDGRSRFLDQEAAVGGEEEEEEEDVESGDELT
EREAEKLRQETLYKPRTRTNFEDMLARDSDHQIEERFRAMARTSAHRTQD
FYEEASARQKGVTKQSLLPTPGVDTCMWRVKVKKNQEMPMVMSIMDMARR
MTAKKQRVGITAAIFAGTKGHVLIEARNEADASAAIRANSRFILSQRLEV
VEYRYMATSLAVSEKVAPRPLRDGQWVRFKRGLYKGDLARVMAILEGGSK
VVIEMVPRINYEDMARNPRAGNIYVVSAASRPGPKFFSASEAREHEVVLH
RGKIPGLNMPCDVACNLHYMNGYLVKEVKPESLQAENINASVEEVTKFGL
GALAEDDGRGHEERLQAAQREAEETQEQQRKNLRVFEQGDAVKVVAGELR
NLVCRVLGSDPTTGTVSVRPVNPNLGLPVKIELQASQLANHVEVGQHVKV
LDGLFAGETGMVQALLSHDEHGAPVPEPIVSVLTDGENKELRVRLGQVKE
SADVATGMSSLSGYSLHDMVCYGYQRFGVIVWLGRESVKVLDSSGVVQSV
PLGELQGNRNRRSHQAAAYDSMNNRMQVEDQVLVTDRGEHFQKRGAIKHI
LGSSLWILTKQETRNSGLFVVRTRAVTLQNLIRKNAAVTFNALHTGAPNP
TLQQHHGQRGFGGGPGGGRGGGRGGGRFGPRSNMDPLVGRVVRIKGKSEF
KGQTGKVRSVKDNVVFVDIESGTRPKTVRVPREAVAEDAPAVAGAAGGRA
GAEAYSLGTGTTPAWTYGRTPMHGGMTPMYGAATPMYGGATPALHSGGGQ
TPAYSGSQTPALYGGGGQTPRHEGAYTPRHEGAYTPRHQYQDG
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Synonyms
Publications