rna5603, rna5603 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5603
Unique Name	rna5603
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2896
Alignment location	CM002466.1:386551..387938 -

Link to JBrowse

Properties


Property Name	Value
Product	adp-ribosylation factor gtpase-activating
Orig transcript id	gnl\|cribi\|Naga_100016g1.2893.mrna
Orig protein id	gnl\|cribi\|Naga_100016g1.2893
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:386551..387938 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100016g1	gene5415	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25084.1	cds5589	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5603	rna5603-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:386551..387938-
coding sequence from alignment at CM002466.1:386551..387938-

mRNA sequence

>rna5603 ID=rna5603|Name=rna5603|organism=Nannochloropsis gaditana|type=mRNA|length=2896bp
TGCTCTTCCCTATGCTCGCACTAGGTGGGCAAGCCATGGCTGGCGGGGAC
ATGGACATGTCACATTCCATAAATAAACCATCAAAGGTGCTGGACGAGGA
TCTGCACGGGTCGCACGGCCATAAAGCGCACGATGCCAGCCACGGCCATC
ACGGCGGGAAGGACCATGGACACGGTGGCGACCACGGGCATGGTCACCAC
GATCTGACGCCCGAGGAGCTCAATTGGAGATGCCGGCTCTTCCTTACGCT
TGAGGAGCCCGATTACTCGCTCGCGGCCCGATTGTTCTCCGCTTTTATCA
ATGCCTGTCTCTTCATGTCGATTATTGCCTTCATGATGGGCACCATGCCT
GAATTCAAGCACTTTCCCTACGTGTGCCCCCCGCACATGATCGTGGGCTA
CACATGCTGGGATGGCTATGGGATGCCGACGAAGGTGATGCCCGTGGACG
TGTACCACAAGGGTTCCTATTTGGAGGGGAAGAAAATGTACGATGAGTAC
CTCGAGAAAAAGAAGGAGAAAGAAGCCGCAGCAGGGGGCACCAAAGGAGG
CTACGGTGGTGCTGGCGGGGGAGGAGGAGGCTACGCTCCTGCTGGTGCCG
GCGCTGCAGGTGGGGCTGGGGATTACGCGGGGGCTGGAGGAGGTCCCGCG
GCTGTGGGGGGGTATGCTCCCGGCGCGGGTGGGGGCGCAGGCTACCCCCC
TGCGGGGGGGACTCCAGGAGGAGCAGGAGGGGCTGGAGCTGGGTACACGT
CTGGCACTGGAGGGGCCGCGCGTGGTGGTTATCCTCCTGCGGGGGGTGCG
GCGGGGGCCGGGGGGCCTGCTGCTGGAGGGGCGGGGTATGCCGGGGGCTA
TCCCACATCTGGGGCCGGAGGAGGCGCTACTACCGGGGGTTACGCTGGCG
CGGGGTCTCCCGGTGGGGGAGGGGCGGGAGGATACGCGCCTGCCGGGGGG
GCCGGGGCTGCCGGAGGGGGGGGGTATGCCGGTGCCCCCACAGGAGGGGC
GGGAGGAGGTGGAGGTTACCCCTCCGCGGGGACAGGGGCCGGCTATCCAA
GCGCCGGGGGAGCGGGAGGCTACCCTCCTTCTGGGGGAGGTTACTCTCCC
GCTGGCGGTTACCGGCCAGCCGCGGGGGGGTATCCTCCCGCCACAGGAGG
GTATGCCCCGATGGGCTACGGTGGCGCCTCAACGGGGTCCTACCCGCCCC
GCGCCTTGTCAGACTTGCTTGGGGACACAGAGGAGGAGCCTTCCTGGATG
TCCGAGGTGGCCCCTACGACGCCGGGGGTCGGTCTCTTTAACCTCAACGG
ACTCGTCCAGCCCGAAGTCGAGGTGGGGCACCGACGGCTGGCATACAAGA
AGAAGCGTCCGATCGGGGAGCCCTACTGCGAGGAGATTTGCGAGTACGAG
CCGGACAAGGAGATCGAGATCGCCGAGGGCTTCGCCATGGCGGCTTTCAC
GATCGACTATCTCGGACGGCTCTTCACCGCCCACGCAGTGCCCTGGCGGG
TCCTCAACCACGGCGCGGCCCATGATCCGAGCGCGAAGCACTACGAGCCC
AACGGCCTTTTCAAGACCGTAGCCTATTTTTTCAGCTTCATGATGCTTGT
CGATCTCCTCGCCCTAGGGCCCTACTACGCCAAGACCATTCTGGACCGCA
TCGCGACCGACGTGGCCTCCTCCCAGACCATGCGGGCCTTAGGCATCGTC
CGCGTGCTGCGCATCATTCCCTTCTACATGCACATGATCGTCTCCACCAA
GGGTCTCCTGCTGCAGGACAAAGCTCCGCACATCTTCCACCTGTTCAACT
TCAGTGTCCTCTTCAATTTCTTGCGTCTGGGTTCCTACACGGAGGGGGCG
CCTTTGTTCTTTTCGACCCTCAAGGCCTGCATCCCCGCCATCAGCGTGGC
CGTCGTTGCCATGGTCTGCCTGGCGATGGTGTTCGCGAGCCTGATCTTTG
TCGTGGAGCGCGGGCGCTTCCGAGTCACACCTGAATTCCCCGACGGCGCG
TTTTTGACGGCCAGAAGCCAGAGGGACCCGACCTTGGTGGAGCCCGCGCA
CGCGAACAGTTTCATGTCCATGTGGTACGTGATCTCCGATACCACAACCA
TGCCAACGATCGCCATGTTGACCCCCGTGACCATATTGGGGGAGGTATTC
GACGTGATGCTGGATTACATGTCGCTGCTCGTTTTGACGCTGCCGATCGC
CATCGTCGCACGGGAGTTCAATGAGCAGTACACGTCGTTCTTTAAGGACT
GGAATAGAGAAGACATTGTCATGTCCTCCTCCTCGGAGGATGAAGGGCAC
TCGGGTGGGCTTGATGACGGGGAGGTGGACGATTTCGATGCGGCCGTAGC
GAAATTGGCTGCTGCTCAAGAGAAGGGTGCGAAGCACCGATCCACTAGGT
TTTCGTTCGATGAGGAGAGTAAAATAGGAGAGTTTAGGGTTTAGAATGGT
CGATGCAAGAGCGACTCCCAGCAGGAGCGTAGTGTATTTGCTTTCACGTT
CACGATATTGGAGTTAATAAATCTGCGGACATGTGTAAGGTAGCGTTGAG
AGGCTTAGGCGAAGTGAAGTTTTTCCTTTTGGATTCTGTGTGAATCGATC
GATTCAGACGTTGTATGCTAACTGGATTGATCTTAAGATGTCAAACGGCG
AGTCGGAATGCGTGGCTTGGACATATGTAAGCCGGTACGCCAGTACAGGA
AGGAAGGCAGTAAGGAACTGGCGATGGATTGAGTCGGTACGCCAGTACAG
GAAGGAAGGCAGTAAGGAACTGGCGATGGATTGTATGTATTAATTTCCCG
TCCGATGACATACCGTGACCCGGTGCGAATGCGGTGGGGGAGCGGGAAAG
AAAATAATTGTTGAGATTTGTCACCGAAGACATGACATCAGTAGGA

protein sequence of rna5603

>rna5603-protein ID=rna5603-protein|Name=rna5603|organism=Nannochloropsis gaditana|type=polypeptide|length=435bp
PPSSSPSKSKPAAPAKGGRVFALQGDGRWRSATVIRFHRARSPLTGRHLL
KLRYRDGSVEEYVDAEDVCLARPQRGSANSPSLASSPTSSSSSSSPLPTQ
ASLWKASLERVSAPTQRRDRREELSRKYAAGASPSHSPAEGGFSPPWPPT
GPPSSSRQRPSSIPAPEHSGQAREYSVVFGEGPMGLTLSKVEGGRALVTS
VAPAGQAVLGGVRVGDALVSLDHQAMALYDLVMARLPSLPRPLVVGFRRR
MEGMGSTEGAVGGPRAPGPRWLGSGASLSGSGGKAFAGGFGKSLQVLTRH
ASLGPGAAAVPSLASASSSSFTSGGSYPLGGGSGLTTKVPLTEDPDAGEF
DACFAEGPLGMRLEEMPLTSREGGLKYVCQVLQVTSGGAAESKGVRDGCC
VVGVNGERFISHAHTVATLKHGKRPVLVRFRLPTS

mRNA from alignment at CM002466.1:386551..387938-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5603 ID=rna5603|Name=rna5603|organism=Nannochloropsis gaditana|type=mRNA|length=1388bp|location=Sequence derived from alignment at CM002466.1:386551..387938- (Nannochloropsis gaditana)
CCCCCCTCTTCCTCCCCCTCCAAGAGCAAGCCGGCAGCGCCTGCCAAGGG
CGGGCGGGTCTTCGCGCTTCAAGGAGACGGCCGATGGCGGTCGGCGACGG
TGATCCGTTTCCACAGGGCCCGGAGCCCCCTGACGGGCCGGCACCTGCTC
AAGCTCCGGTACCGAGACGGCAGTGTCGAGGAGTATGTGGACGCGGAGGA
CGTGTGCCTGGCCCGGCCCCAGAGGGGATCGGCCAACTCGCCCTCTCTCG
CCTCCTCCCCGACCTCCTCTTCTTCCTCCTCCTCTCCCTTGCCCACCCAA
GCGTCGCTGTGGAAAGCCTCCCTTGAGCGCGTCTCGGCCCCGACGCAACG
GCGCGACCGGCGGGAAGAACTCAGCCGCAAGTACGCCGCGGGCGCCAGCC
CCTCCCACTCACCCGCCGAGGGCGGCTTTTCCCCGCCCTGGCCTCCCACC
GGCCCGCCGAGCTCTTCCCGGCAGCGCCCATCTTCCATTCCGGCCCCGGA
GCATTCCGGACAGGCGCGGGAGTATTCGGTGGTTTTCGGGGAGGGGCCCA
TGGGGCTGACTCTGAGCAAGGTCGAGGGGGGCCGGGCCCTGGTCACGAGT
GTGGCGCCCGCAGGCCAAGCTGTGCTGGGCGGGGTGCGCGTGGGGGATGC
TCTGGTTAGCCTCGACCATCAAGCCATGGCGCTCTACGACCTGGTCATGG
CCCGGCTGCCCTCCCTCCCGCGGCCCCTGGTGGTTGGCTTCCGACGGAGG
ATGGAGGGGATGGGGAGCACCGAGGGCGCGGTGGGAGGCCCTAGGGCACC
GGGTCCGCGCTGGCTGGGGAGCGGGGCGTCCTTGTCGGGCTCGGGAGGTA
AAGCCTTCGCGGGCGGCTTCGGGAAGTCCCTCCAGGTGCTCACGCGCCAT
GCCAGCCTTGGCCCGGGGGCAGCCGCCGTCCCCTCCCTGGCCTCGGCCTC
CTCCTCCTCCTTCACGAGCGGCGGCAGCTATCCCTTGGGAGGCGGTTCTG
GTCTCACAACCAAAGTCCCGTTGACCGAAGACCCGGATGCCGGGGAATTC
GACGCCTGTTTTGCGGAGGGGCCGCTTGGCATGCGGTTGGAGGAGATGCC
GTTGACGTCGAGGGAAGGTGGCCTCAAGTACGTGTGCCAGGTTTTGCAAG
TGACCAGTGGGGGGGCAGCTGAGTCGAAGGGTGTTCGTGACGGTTGCTGT
GTCGTCGGCGTCAACGGGGAACGCTTCATATCTCATGCACACACGGTGGC
CACTTTGAAGCACGGGAAGCGCCCCGTGCTTGTCCGATTTCGGCTGCCGA
CATCATAAGAGTAGCTTAGCTTCATACTCAAATTTGGGAAATGTTGGGGG
AAAAAAAGTTTGTACGAAAGTATAATGCGCGAATGTGC

Coding sequence (CDS) from alignment at CM002466.1:386551..387938-

>rna5603 ID=rna5603|Name=rna5603|organism=Nannochloropsis gaditana|type=CDS|length=1308bp|location=Sequence derived from alignment at CM002466.1:386551..387938- (Nannochloropsis gaditana)
CCCCCCTCTTCCTCCCCCTCCAAGAGCAAGCCGGCAGCGCCTGCCAAGGG
CGGGCGGGTCTTCGCGCTTCAAGGAGACGGCCGATGGCGGTCGGCGACGG
TGATCCGTTTCCACAGGGCCCGGAGCCCCCTGACGGGCCGGCACCTGCTC
AAGCTCCGGTACCGAGACGGCAGTGTCGAGGAGTATGTGGACGCGGAGGA
CGTGTGCCTGGCCCGGCCCCAGAGGGGATCGGCCAACTCGCCCTCTCTCG
CCTCCTCCCCGACCTCCTCTTCTTCCTCCTCCTCTCCCTTGCCCACCCAA
GCGTCGCTGTGGAAAGCCTCCCTTGAGCGCGTCTCGGCCCCGACGCAACG
GCGCGACCGGCGGGAAGAACTCAGCCGCAAGTACGCCGCGGGCGCCAGCC
CCTCCCACTCACCCGCCGAGGGCGGCTTTTCCCCGCCCTGGCCTCCCACC
GGCCCGCCGAGCTCTTCCCGGCAGCGCCCATCTTCCATTCCGGCCCCGGA
GCATTCCGGACAGGCGCGGGAGTATTCGGTGGTTTTCGGGGAGGGGCCCA
TGGGGCTGACTCTGAGCAAGGTCGAGGGGGGCCGGGCCCTGGTCACGAGT
GTGGCGCCCGCAGGCCAAGCTGTGCTGGGCGGGGTGCGCGTGGGGGATGC
TCTGGTTAGCCTCGACCATCAAGCCATGGCGCTCTACGACCTGGTCATGG
CCCGGCTGCCCTCCCTCCCGCGGCCCCTGGTGGTTGGCTTCCGACGGAGG
ATGGAGGGGATGGGGAGCACCGAGGGCGCGGTGGGAGGCCCTAGGGCACC
GGGTCCGCGCTGGCTGGGGAGCGGGGCGTCCTTGTCGGGCTCGGGAGGTA
AAGCCTTCGCGGGCGGCTTCGGGAAGTCCCTCCAGGTGCTCACGCGCCAT
GCCAGCCTTGGCCCGGGGGCAGCCGCCGTCCCCTCCCTGGCCTCGGCCTC
CTCCTCCTCCTTCACGAGCGGCGGCAGCTATCCCTTGGGAGGCGGTTCTG
GTCTCACAACCAAAGTCCCGTTGACCGAAGACCCGGATGCCGGGGAATTC
GACGCCTGTTTTGCGGAGGGGCCGCTTGGCATGCGGTTGGAGGAGATGCC
GTTGACGTCGAGGGAAGGTGGCCTCAAGTACGTGTGCCAGGTTTTGCAAG
TGACCAGTGGGGGGGCAGCTGAGTCGAAGGGTGTTCGTGACGGTTGCTGT
GTCGTCGGCGTCAACGGGGAACGCTTCATATCTCATGCACACACGGTGGC
CACTTTGAAGCACGGGAAGCGCCCCGTGCTTGTCCGATTTCGGCTGCCGA
CATCATAA

Synonyms

Publications