EWM25084.1, cds5589 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25084.1 vs. NCBI_GenBank
Match: gi|585106722|gb|EWM25084.1| (adp-ribosylation factor gtpase-activating, partial [Nannochloropsis gaditana]) HSP 1 Score: 852.818 bits (2202), Expect = 0.000e+0 Identity = 435/435 (100.00%), Postives = 435/435 (100.00%), Query Frame = 0
Query: 1 PPSSSPSKSKPAAPAKGGRVFALQGDGRWRSATVIRFHRARSPLTGRHLLKLRYRDGSVEEYVDAEDVCLARPQRGSANSPSLASSPTSSSSSSSPLPTQASLWKASLERVSAPTQRRDRREELSRKYAAGASPSHSPAEGGFSPPWPPTGPPSSSRQRPSSIPAPEHSGQAREYSVVFGEGPMGLTLSKVEGGRALVTSVAPAGQAVLGGVRVGDALVSLDHQAMALYDLVMARLPSLPRPLVVGFRRRMEGMGSTEGAVGGPRAPGPRWLGSGASLSGSGGKAFAGGFGKSLQVLTRHASLGPGAAAVPSLASASSSSFTSGGSYPLGGGSGLTTKVPLTEDPDAGEFDACFAEGPLGMRLEEMPLTSREGGLKYVCQVLQVTSGGAAESKGVRDGCCVVGVNGERFISHAHTVATLKHGKRPVLVRFRLPTS 435
PPSSSPSKSKPAAPAKGGRVFALQGDGRWRSATVIRFHRARSPLTGRHLLKLRYRDGSVEEYVDAEDVCLARPQRGSANSPSLASSPTSSSSSSSPLPTQASLWKASLERVSAPTQRRDRREELSRKYAAGASPSHSPAEGGFSPPWPPTGPPSSSRQRPSSIPAPEHSGQAREYSVVFGEGPMGLTLSKVEGGRALVTSVAPAGQAVLGGVRVGDALVSLDHQAMALYDLVMARLPSLPRPLVVGFRRRMEGMGSTEGAVGGPRAPGPRWLGSGASLSGSGGKAFAGGFGKSLQVLTRHASLGPGAAAVPSLASASSSSFTSGGSYPLGGGSGLTTKVPLTEDPDAGEFDACFAEGPLGMRLEEMPLTSREGGLKYVCQVLQVTSGGAAESKGVRDGCCVVGVNGERFISHAHTVATLKHGKRPVLVRFRLPTS
Sbjct: 1 PPSSSPSKSKPAAPAKGGRVFALQGDGRWRSATVIRFHRARSPLTGRHLLKLRYRDGSVEEYVDAEDVCLARPQRGSANSPSLASSPTSSSSSSSPLPTQASLWKASLERVSAPTQRRDRREELSRKYAAGASPSHSPAEGGFSPPWPPTGPPSSSRQRPSSIPAPEHSGQAREYSVVFGEGPMGLTLSKVEGGRALVTSVAPAGQAVLGGVRVGDALVSLDHQAMALYDLVMARLPSLPRPLVVGFRRRMEGMGSTEGAVGGPRAPGPRWLGSGASLSGSGGKAFAGGFGKSLQVLTRHASLGPGAAAVPSLASASSSSFTSGGSYPLGGGSGLTTKVPLTEDPDAGEFDACFAEGPLGMRLEEMPLTSREGGLKYVCQVLQVTSGGAAESKGVRDGCCVVGVNGERFISHAHTVATLKHGKRPVLVRFRLPTS 435
BLAST of EWM25084.1 vs. NCBI_GenBank
Match: gi|298715275|emb|CBJ27924.1| (ADP-ribosylation factor GTPase-activating protein, putative [Ectocarpus siliculosus]) HSP 1 Score: 139.428 bits (350), Expect = 7.486e-32 Identity = 105/304 (34.54%), Postives = 153/304 (50.33%), Query Frame = 0
Query: 171 QAREYSVVFGEGPMGLTLSKVEGGRALVTSVAPAGQAVLGGVRVGDALVSLDHQAMALYDLVMARLPSLPRPLVVGFRRRME---------------------------GMGSTEGAVGGPRAPGPRWLGSGASLSGSGGKAFAGGFG------KSLQVLTRHASLGPGAAAVPS-LASASSSSFTSGGSYPLG---GGSGLTTKVPLTEDP--DAGEFDACFAEGPLGMRLEEMPLTSREGGLKYVCQVLQVTSGGAAESKGVRDGCCVVGVNGERFISHAHTVATLKHGKRPVLVRFRLPTS 435
++R ++VVF G MGLTL+K G VT V P G A GV +G + +++ Q Y+ MA + PRP+ + F G+ +T GA+ A W G GA+ G A + G G + +V +H+ + A+P+ +A +S ++ + + ++TK L++ P + GEFD F EG LGMRLEE G K V+++T GG A S GVR+GC VVG+NGE+++SHAHTVATLKH +RPV+VRFRLP +
Sbjct: 771 KSRGHTVVFPAGGMGLTLTKEMSGGCSVTKVVPGGVADSRGVALGQRVCAVNGQPSGTYEHTMAVIGGSPRPISITFVMPSTGGGSGNGGRFSGVGGGPPVVQHTWADVGLAATIGAMDAANAVAVEW-GLGANTPGVLAGAHSSGAGDIPPAPQGFRVHQKHSLM-----AIPTGVAGGFGNSLAKHRTFAVDVSPDMATMSTKKALSDAPGEEVGEFDVRFGEGELGMRLEE------RGSFKASSVVVKITEGGQAVSLGVREGCKVVGINGEKYLSHAHTVATLKHARRPVVVRFRLPDA 1062 HSP 2 Score: 72.4034 bits (176), Expect = 6.590e-10 Identity = 40/78 (51.28%), Postives = 47/78 (60.26%), Query Frame = 0
Query: 170 GQAREYSVVFGEGPMGLTLSKVEGGRALVTSVAPAGQAVLGGVRVGDALVSLDHQAMALYDLVMARLPSLPRPLVVGF 247
G+ EY VVFG G MG TL K RALVT +AP G A GVR GD LV +D + + YD +M LP PRPL + F
Sbjct: 213 GREEEYEVVFGPGGMGFTLMKDAVSRALVTRLAPGGMAFRLGVRTGDYLVGVDGRRLHDYDQLMLLLPRTPRPLRLLF 290 The following BLAST results are available for this feature:
BLAST of EWM25084.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 2
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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