EWM25084.1, cds5589 (CDS) Nannochloropsis gaditana

Overview
NameEWM25084.1
Unique Namecds5589
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:386631..387938 -

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Properties
Property NameValue
Protein idEWM25084.1
Productadp-ribosylation factor gtpase-activating
Partialtrue
Orig transcript idgnl|cribi|Naga_100016g1.2893.mrna
GbkeyCDS
End range.
End range387938
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:386631..387938 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
Homology
BLAST of EWM25084.1 vs. NCBI_GenBank
Match: gi|585106722|gb|EWM25084.1| (adp-ribosylation factor gtpase-activating, partial [Nannochloropsis gaditana])

HSP 1 Score: 852.818 bits (2202), Expect = 0.000e+0
Identity = 435/435 (100.00%), Postives = 435/435 (100.00%), Query Frame = 0
Query:    1 PPSSSPSKSKPAAPAKGGRVFALQGDGRWRSATVIRFHRARSPLTGRHLLKLRYRDGSVEEYVDAEDVCLARPQRGSANSPSLASSPTSSSSSSSPLPTQASLWKASLERVSAPTQRRDRREELSRKYAAGASPSHSPAEGGFSPPWPPTGPPSSSRQRPSSIPAPEHSGQAREYSVVFGEGPMGLTLSKVEGGRALVTSVAPAGQAVLGGVRVGDALVSLDHQAMALYDLVMARLPSLPRPLVVGFRRRMEGMGSTEGAVGGPRAPGPRWLGSGASLSGSGGKAFAGGFGKSLQVLTRHASLGPGAAAVPSLASASSSSFTSGGSYPLGGGSGLTTKVPLTEDPDAGEFDACFAEGPLGMRLEEMPLTSREGGLKYVCQVLQVTSGGAAESKGVRDGCCVVGVNGERFISHAHTVATLKHGKRPVLVRFRLPTS 435
            PPSSSPSKSKPAAPAKGGRVFALQGDGRWRSATVIRFHRARSPLTGRHLLKLRYRDGSVEEYVDAEDVCLARPQRGSANSPSLASSPTSSSSSSSPLPTQASLWKASLERVSAPTQRRDRREELSRKYAAGASPSHSPAEGGFSPPWPPTGPPSSSRQRPSSIPAPEHSGQAREYSVVFGEGPMGLTLSKVEGGRALVTSVAPAGQAVLGGVRVGDALVSLDHQAMALYDLVMARLPSLPRPLVVGFRRRMEGMGSTEGAVGGPRAPGPRWLGSGASLSGSGGKAFAGGFGKSLQVLTRHASLGPGAAAVPSLASASSSSFTSGGSYPLGGGSGLTTKVPLTEDPDAGEFDACFAEGPLGMRLEEMPLTSREGGLKYVCQVLQVTSGGAAESKGVRDGCCVVGVNGERFISHAHTVATLKHGKRPVLVRFRLPTS
Sbjct:    1 PPSSSPSKSKPAAPAKGGRVFALQGDGRWRSATVIRFHRARSPLTGRHLLKLRYRDGSVEEYVDAEDVCLARPQRGSANSPSLASSPTSSSSSSSPLPTQASLWKASLERVSAPTQRRDRREELSRKYAAGASPSHSPAEGGFSPPWPPTGPPSSSRQRPSSIPAPEHSGQAREYSVVFGEGPMGLTLSKVEGGRALVTSVAPAGQAVLGGVRVGDALVSLDHQAMALYDLVMARLPSLPRPLVVGFRRRMEGMGSTEGAVGGPRAPGPRWLGSGASLSGSGGKAFAGGFGKSLQVLTRHASLGPGAAAVPSLASASSSSFTSGGSYPLGGGSGLTTKVPLTEDPDAGEFDACFAEGPLGMRLEEMPLTSREGGLKYVCQVLQVTSGGAAESKGVRDGCCVVGVNGERFISHAHTVATLKHGKRPVLVRFRLPTS 435          
BLAST of EWM25084.1 vs. NCBI_GenBank
Match: gi|298715275|emb|CBJ27924.1| (ADP-ribosylation factor GTPase-activating protein, putative [Ectocarpus siliculosus])

HSP 1 Score: 139.428 bits (350), Expect = 7.486e-32
Identity = 105/304 (34.54%), Postives = 153/304 (50.33%), Query Frame = 0
Query:  171 QAREYSVVFGEGPMGLTLSKVEGGRALVTSVAPAGQAVLGGVRVGDALVSLDHQAMALYDLVMARLPSLPRPLVVGFRRRME---------------------------GMGSTEGAVGGPRAPGPRWLGSGASLSGSGGKAFAGGFG------KSLQVLTRHASLGPGAAAVPS-LASASSSSFTSGGSYPLG---GGSGLTTKVPLTEDP--DAGEFDACFAEGPLGMRLEEMPLTSREGGLKYVCQVLQVTSGGAAESKGVRDGCCVVGVNGERFISHAHTVATLKHGKRPVLVRFRLPTS 435
            ++R ++VVF  G MGLTL+K   G   VT V P G A   GV +G  + +++ Q    Y+  MA +   PRP+ + F                                G+ +T GA+    A    W G GA+  G    A + G G      +  +V  +H+ +     A+P+ +A    +S     ++ +      + ++TK  L++ P  + GEFD  F EG LGMRLEE       G  K    V+++T GG A S GVR+GC VVG+NGE+++SHAHTVATLKH +RPV+VRFRLP +
Sbjct:  771 KSRGHTVVFPAGGMGLTLTKEMSGGCSVTKVVPGGVADSRGVALGQRVCAVNGQPSGTYEHTMAVIGGSPRPISITFVMPSTGGGSGNGGRFSGVGGGPPVVQHTWADVGLAATIGAMDAANAVAVEW-GLGANTPGVLAGAHSSGAGDIPPAPQGFRVHQKHSLM-----AIPTGVAGGFGNSLAKHRTFAVDVSPDMATMSTKKALSDAPGEEVGEFDVRFGEGELGMRLEE------RGSFKASSVVVKITEGGQAVSLGVREGCKVVGINGEKYLSHAHTVATLKHARRPVVVRFRLPDA 1062          

HSP 2 Score: 72.4034 bits (176), Expect = 6.590e-10
Identity = 40/78 (51.28%), Postives = 47/78 (60.26%), Query Frame = 0
Query:  170 GQAREYSVVFGEGPMGLTLSKVEGGRALVTSVAPAGQAVLGGVRVGDALVSLDHQAMALYDLVMARLPSLPRPLVVGF 247
            G+  EY VVFG G MG TL K    RALVT +AP G A   GVR GD LV +D + +  YD +M  LP  PRPL + F
Sbjct:  213 GREEEYEVVFGPGGMGFTLMKDAVSRALVTRLAPGGMAFRLGVRTGDYLVGVDGRRLHDYDQLMLLLPRTPRPLRLLF 290          
The following BLAST results are available for this feature:
BLAST of EWM25084.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106722|gb|EWM25084.1|0.000e+0100.00adp-ribosylation factor gtpase-activating, partial... [more]
gi|298715275|emb|CBJ27924.1|7.486e-3234.54ADP-ribosylation factor GTPase-activating protein,... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5603rna5603Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications