rna5572, rna5572 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5572
Unique Name	rna5572
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3119
Alignment location	CM002466.1:315246..316350 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100016g35.2968.mrna
Orig protein id	gnl\|cribi\|Naga_100016g35.2968
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:315246..316350 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100016g35	gene5385	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5572	rna5572-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25159.1	cds5558	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:315246..316350+
coding sequence from alignment at CM002466.1:315246..316350+

mRNA sequence

>rna5572 ID=rna5572|Name=rna5572|organism=Nannochloropsis gaditana|type=mRNA|length=3119bp
TCACGGGGCATATACTATTCAAGCGGCGGCCATCGGATGCGAGAATCATC
TCAAAATCTTAAGCGTAGCCAACGCTTTTGATCGAGCTTACCACTAAAGT
AATCCTCATTAATTTTGCCCTGTCGCACAGGTTGGACATCACTCGCCGGC
CTGCCGTATTTCCAGGGCGACTCCGCAACCAACGAGAAATTGAGCTATCG
ATCCGGCCGGAAGTCCCATCCCCGTCGCTTGGCTTGCATCTATCTCCGCT
CCGCGACGCAAACAATGTGCAATGTTCCTCGCGATCACATGACTATGGCT
GCCAAAGCCCGGGCCTGGCGAAATGAGAAGTTCAGGGCCATCAAGAACAG
AGCCCGGCGCACTCGGGACAAGATCAAGGGCCGACTGCAGCCCAGCTTCT
CTTTCATCGCTCGTTTCATTCTGCGCAGTGTGCTTCTTCTGTTGATCTGC
GCATTCGCCCCGCTACTCCTCATTTTTGCGCTCTTTCACGATTGGTTGAT
GAAAAAATTCATCAACTATGCCTACATATACAATGTAAGCTGGGAGGACC
CCCGCATGGATCAGGAAGTCTTCAATTTGAAGGACGACGACCATGTCATC
ACAATCGCATCTGCTGGCTGCAACGTGTTGGACTACATTATTGAGGGGGC
CCGCGTCACGGCGGTTGATTTCAACGCCTGCCAGATTGCCTTGACCGAGT
TGAAATCAGTGGCGATCCAGCGTCTGGAGTTTCCTGAGTTTTTTGCTATT
TTTGCCAAGAACGACACGGCACTCCTTCGAAAGCTCTACCCAACCGTCCT
CCGACCCGGGCTATCCGCGGCTTCGGCTGAATTTTGGGACCGATACGTGG
TGAAGATTCAGTCCTTCATGTACTCGGGCTCGTCGGGCTTTCTCGCCTTC
CTGGCCTTCCGCGTGGTCTTGCCACTCCTGCATCTGGGCTGGATCCGACA
GGCTATTTTACAGCGCATGTCCAAGGACGATTTTCTGGTCTTGTGCCACA
CCCACGAAAAGCAGATCGCGATCTGCTCCTGGCTCCTCGACACCATGCTG
CCCTGTTTCGCGCTCTTTGCGGGCGTACCTCGTCGTCAGATGAACCTTGG
CTTCGGCCGGGAAAACTTCAGCGTGATCGTCAACCACGTCTTGTTCAATA
CTGACCTGGTACATGACAACTACTTTTACCTGGGGTACATCCTGGGAGAG
TACACGGAAGAGTGCTGCCCGCGGTATTTAAAGGCCGAGAACTTCGCTGC
CATGAAGAAGCACCTCCTGGCTGGCAAGCTCCATCTCTTCCACGGGTCCA
TTGAACAAGCCATCATGAAGAACGCGGCCGACGGAGACGAGCTTTTCACC
GTCGCCTCCTTGCTCGACCACATGGACTGGATGGATAAGGGCATGGTGAC
GTCCGAGATCTCCCTCTTGGTACAGCGCATGGACCAGGAACGCGGCCGCA
TTTACTGGCGCTCTTTCTCGGAGAACGTTCACATCCCGCCCCTCGTCTGG
ATGGGGGCCCAGAAGGTGGATGACATCTACGAGAACAGCATGGGGGACCG
GGTGGGCATGTACTTCTCCACGTGGATCGCGAACCTGAAGGACAGCGAGT
TCGTGGTCACCCCTCGTTGCCGCTCCTGGCGCAAGGACGGGGGGGCGTAC
CGCTCCGGCCTGGCGGCACAGTTGTTGACGGGCGCAAAGATTGTCACAGC
CCCCGTCTGGAAGCGCGTGGTTCAGGCCAGCAGCGGCAAGGAGAGGCTGG
GCGGCAAGGCAGACAGCAAGAACGGAGAGGGACGCACGGACAGTGCGCAT
GAACGAGACATGGAGGCATTCTACAAATTTCAAAAGGAGGGCTATGACGG
CTTCCGTGAGAACTTCTTGCATGCGCGCATGGACCTGATCCAAGCCATGC
CCCTCAAGAGGAAGGGTGGCATGGTATGGATCGACGTTGGCGGTGGCACG
GCCCGCAACCTGGAGTTCATTCCCGTCGAGATCCTGCGCAAATACTTCAA
AGCCATATACGTCGTCGATGTATCTCCGTCCCTGCTAGGAGTCGCCCAGC
AGCGTGTGGCAGCGGCTGGCTTGACCGACTTGGTGCACCTGATCGAGCAC
GACTTCACGGCCCCGTCTATCTTCAAGACCCTGCCCTTCCTGGAGGGGAA
AGTCGACATGTTGACTTTCTCCTATTCCCTCTCCATGATCCCCGACAAAA
CCGCCGCCCTGGTAAACGCCCTCCGTTTCCTCCAACCCAACGGCCATGGC
GTGCTTGGTCTGGCAGATTTCTTCTTGGCCTCAAACGAGGATTCAGGCTT
GCCCACCATGCTCGCCTCGCTCCGGCGTATGGAAGCCACCTTCCAGCGGA
AATGGTTCGAGCAGGACCGCGTTCACCTCATCTCTCCCGCCATTCTCAAG
CGTCTGGAGAAAGCAACGACGTGTGTGTGGGACGAACGCTTTCGCGGCGG
AGTGCCCCTCTTGCCGGTGCTCCGCCCGTACCACGGTGCTTATGTCGCCT
TGACCGGCAAATCAAAAGCCCAGTAGGATAGAAGCGAGGACCGAACATTG
GCAGGAAGGTAGATGGAGCAGCATCAAGATTATGTCGTTTGAACTCTCAA
CTGACGGGATGTTAGTCGTGATGATAGGTCACGAAAATGTGATTTTGCGA
AACAGTGCGTCCAGGCGTTAGCCCTCTGGCGGGGCTTTCGTCAACATGCC
GTTGACCTCCCGGTTCATAAAGGGTCGGAGAGGTCTGTCCTTTCTGAAAA
TATTGAACTTTTAAACCCATCGTCCCAAAGCAGTTCTTGAAAGGATAATT
TAAGAGAAAGCAAATAGTTAGGAGGCAGGAGACATGGATCCTAGATAAAG
CGAACGGATAGAAGGCGGAAATATTGGAAGCTTGGCCTTGAGTTAGCTGT
TGTAGCGTGTCACTGTCTTGAATTCTACATCTGTGTGTGAAATTGTAAGA
GGTAGAATTGCTGATCGACAGCATTTTGCTTATCTGCACGGGGGTAAATA
GTCGAGCGGGGACCTCAATTTAAGTCTTGTGCTATACATTGCGAGTACAG
ATCAAGCACCTGCAAAAATCTTAAGTGGAAGGAATCGCAAAAGAAGTAGA
TAACGGGGGAGTAACATTT

protein sequence of rna5572

>rna5572-protein ID=rna5572-protein|Name=rna5572|organism=Nannochloropsis gaditana|type=polypeptide|length=235bp
MALILNRLYLPGVFMTALCVIFALGAVLTAEFASGMAMVSGSDGFAKVNL
GLWHGIAHIAGRRQVFRLEWCDASSPSFDGPYCAQLQVCRVAACAGVCLL
VAVSVLLALLATNAVRTRFEAPLTKIVAGTFSMAALCFGTCLGVWVALVV
SLSTKEEDSKARLSIGMSWLAEGGAFILAFLLAIKMLQTATRIEGEARIA
TDMNKRARNGTQTSYPNKPEKPRSRPSHGAGDLEA

mRNA from alignment at CM002466.1:315246..316350+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5572 ID=rna5572|Name=rna5572|organism=Nannochloropsis gaditana|type=mRNA|length=1105bp|location=Sequence derived from alignment at CM002466.1:315246..316350+ (Nannochloropsis gaditana)
cccgCATCGATCGTCAAATGGTTAGAAGCTGTAAAGGTGAAGGCCTAATT
TGAATTATACAAGGGTGTTTTAGCTTGTTTGGAGATGAACGCGGATTTCT
TAAGTTGGTGGATGAATGGGAATATGACAAGATATTAAAGGCCTCATGTC
GGCATGGCATGCCTGTTTATGCGTACATTAAAACACACAAGCAAACAGGA
CAAGCATGGCGCTAATCCTGAACCGCCTCTACTTACCAGGTAAGTCGACA
CGTACATCTTTTATTCTTGTAATGTCGTTGCATGACAATTGTTGATATGG
AGTGTCGAAGCCCCAACGTACAACGCTGTAGGGGGCCAGAGtatttcctc
ccttgtcgtGTCTAGGTTGCATCTATCACACATTTTTGCGATGAAATCTC
ACAAATTGTGTAAAATTATATAGGAGTATTCATGACAGCACTATGCGTGA
TTTTTGCCCTTGGTGCCGTATTGACAGCGGAATTTGCAAGCGGGATGGCC
ATGGTAAGCGGCTCGGACGGCTTTGCGAAAGTCAATTTGGGCCTCTGGCA
TGGAATAGCTCACATCGCAGGCCGAAGACAAGTTTTTCGACTGGAATGGT
GTGACGCGAGCAGTCCCTCATTTGACGGCCCTTACTGTGCGCAGCTGCAA
GTCTGTCGAGTAGCAGCCTGTGCGGGTGTCTGCTTGCTTGTCGCCGTGTC
GGTCCTGCTCGCCCTTCTGGCTACGAACGCAGTCCGCACACGTTTTGAAG
CTCCATTGACCAAAATAGTTGCAGGAACTTTCTCTATGGCCGCATTATGT
TTCGGGACGTGTTTGGGCGTGTGGGTGGCACTTGTCGTATCGTTGAGCAC
taaggaagaagacagcaAAGCAAGGCTTTCTATTGGAATGTCGTGGCTCG
CCGAAGGTGGAGCCTTTATCCTCGCATTTCTTCTGGCAATTAAGATGCTT
CAGACAGCTACGAGAATAGAGGGGGAAGCCAGAATAGCAACTGACATGAA
CAAGCGCGCACGAAACGGCACGCAGACTAGTTATCCGAACAAACCTGAGA
AGCCGAGAAGCAGACCGTCACATGGCGCGGGAGATCTCGAGGCTTAAAAT
TTTAC

Coding sequence (CDS) from alignment at CM002466.1:315246..316350+

>rna5572 ID=rna5572|Name=rna5572|organism=Nannochloropsis gaditana|type=CDS|length=1416bp|location=Sequence derived from alignment at CM002466.1:315246..316350+ (Nannochloropsis gaditana)
ATGGCGCTAATCCTGAACCGCCTCTACTTACCAGGAGTATTCATGACAGC
ACTATGCGTGATTTTTGCCCTTGGTGCCGTATTGACAGCGGAATTTGCAA
GCGGGATGGCCATGGTAAGCGGCTCGGACGGCTTTGCGAAAGTCAATTTG
GGCCTCTGGCATGGAATAGCTCACATCGCAGGCCGAAGACAAGTTTTTCG
ACTGGAATGGTGTGACGCGAGCAGTCCCTCATTTGACGGCCCTTACTGTG
CGCAGCTGCAAGTCTGTCGAGTAGCAGCCTGTGCGGGTGTCTGCTTGCTT
GTCGCCGTGTCGGTCCTGCTCGCCCTTCTGGCTACGAACGCAGTCCGCAC
ACGTTTTGAAGCTCCATTGACCAAAATAGTTGCAGGAACTTTCTCTATGG
CCGCATTATGTTTCGGGACGTGTTTGGGCGTGTGGGTGGCACTTGTCGTA
TCGTTGAGCACtaaggaagaagacagcaAAGCAAGGCTTTCTATTGGAAT
GTCGTGGCTCGCCGAAGGTGGAGCCTTTATCCTCGCATTTCTTCTGGCAA
TTAAGATGCTTCAGACAGCTACGAGAATAGAGGGGGAAGCCAGAATAGCA
ACTGACATGAACAAGCGCGCACGAAACGGCACGCAGACTAGTTATCCGAA
CAAACCTGAGAAGCCGAGAAGCAGACCGTCACATGGCGCGGGAGATCTCG
AGGCTTAAATGGCGCTAATCCTGAACCGCCTCTACTTACCAGGAGTATTC
ATGACAGCACTATGCGTGATTTTTGCCCTTGGTGCCGTATTGACAGCGGA
ATTTGCAAGCGGGATGGCCATGGTAAGCGGCTCGGACGGCTTTGCGAAAG
TCAATTTGGGCCTCTGGCATGGAATAGCTCACATCGCAGGCCGAAGACAA
GTTTTTCGACTGGAATGGTGTGACGCGAGCAGTCCCTCATTTGACGGCCC
TTACTGTGCGCAGCTGCAAGTCTGTCGAGTAGCAGCCTGTGCGGGTGTCT
GCTTGCTTGTCGCCGTGTCGGTCCTGCTCGCCCTTCTGGCTACGAACGCA
GTCCGCACACGTTTTGAAGCTCCATTGACCAAAATAGTTGCAGGAACTTT
CTCTATGGCCGCATTATGTTTCGGGACGTGTTTGGGCGTGTGGGTGGCAC
TTGTCGTATCGTTGAGCACtaaggaagaagacagcaAAGCAAGGCTTTCT
ATTGGAATGTCGTGGCTCGCCGAAGGTGGAGCCTTTATCCTCGCATTTCT
TCTGGCAATTAAGATGCTTCAGACAGCTACGAGAATAGAGGGGGAAGCCA
GAATAGCAACTGACATGAACAAGCGCGCACGAAACGGCACGCAGACTAGT
TATCCGAACAAACCTGAGAAGCCGAGAAGCAGACCGTCACATGGCGCGGG
AGATCTCGAGGCTTAA

Synonyms

Publications