rna5570, rna5570 (mRNA) Nannochloropsis gaditana

Overview
Namerna5570
Unique Namerna5570
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length789
Alignment locationCM002466.1:309961..311298 +

Link to JBrowse

Properties
Property NameValue
Productbeclin 1
Orig transcript idgnl|cribi|Naga_100016g38.2933.mrna
Orig protein idgnl|cribi|Naga_100016g38.2933
GeneAtg6
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:309961..311298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Atg6gene5383Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5570rna5570-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25124.1cds5556Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5570 ID=rna5570|Name=rna5570|organism=Nannochloropsis gaditana|type=mRNA|length=789bp
ATGTCCTATTCGACCCCTCCACTGAACGTAGAAGGCAGGCATGACGCCAT
GGAGGAAGAGCCCTCTTCTCAGTACGCAGACCACAGGCAGCACATAGCCG
AGCAAATGCTGCTGTCCAGCCCTCCAGGTCAATTTGGACATGTACTCACT
GACCTTCGCAAACTTTTGCCAGCAAGTGTCTTGACCGAAAGCTTCGTTCA
AGAGGTGACCAAGGTGTACAATGCCCGGCGAGGGATAGGGCTGGGCAAGG
TTGAGGAAATGAGAAACCTGACAGAGGGTCAAGAGCGACTAAACATGAAG
CGCCAGGAACTAGAGAGGGCGCTGGCTGGCCACGTCACGGAGAGCTACGC
CTCAGACTCGGCGACAACCACTATGTGCTCGGTAAAAGGTTCCACCTTGC
ACGTGATTATCTACAGCGAGCGCGTCAACTTGGCCAACTTTTGGTCGGCC
TCCTGGCTCTCAGAGTGGAGCATCGATGACGATAAGCTCTCCGGATCGAT
TCAGGTTCGGGCACATTATTTCGAGGACGGAAACGTGCAGTTACATGTAA
ACAAATCTTATCCGGTTTTGAGTGTGTCCCTAAGAAGCGACACTGCCATT
ATAGTTGAATGCATAAAGCTGGCCGAGGAGACATTAAGTAAGAATATTGA
GGCCACCTGTCAAGAGCTCAGCACTGAAGGCCTTCATTCCCTCAGACGCA
AGCTGCCTGTGAGTAAAGTCAAGATGAACTGGTCAGATGCGGCTGCTCAA
AACATAAGCAAAGTACTTCATAATAATACGGAACATTGA
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protein sequence of rna5570

>rna5570-protein ID=rna5570-protein|Name=rna5570|organism=Nannochloropsis gaditana|type=polypeptide|length=280bp
MPSEGDGPEAHILHLREKLKAVEARRITLHRRRALVEKKRRRLQGLLDLW
QSLNNSAAEALLDLSESHQATHGSELSAGARLEALTQLNVANDCFHVWHS
GPFATMNGCSIGRLPAFAAVEWTDINAGLGQAILLLDTLVKQTGFRFRRL
ELVPFGSFSKILRSPCDLSDVETKLMPNSPRITASNAMSFYYDEANLAFF
PRRNMNAALVAFLQCVEEFGSHVEGLDPTIRLPHRVQGNKIGGLPIVLTP
GEEDTWNRALKYLLTDLKWLSAWSARHVLL
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mRNA from alignment at CM002466.1:309961..311298+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5570 ID=rna5570|Name=rna5570|organism=Nannochloropsis gaditana|type=mRNA|length=1338bp|location=Sequence derived from alignment at CM002466.1:309961..311298+ (Nannochloropsis gaditana)
gggaaacaaATTGATGTCATACGACCAAGCTGTCCAGCGTTGTGGGGGGC
TGAAACTTATACCTTACACAACATATTACGTACGACCCAACACCACTCGA
TACAGGCGCGGAGTGGGAAAGCGCGCGGTCACATGATCATGAAAGAAAGA
CCCTAAAGGAGATCCTAAGAGGAAAATGTGCGTATATCGAAAGCAGAGAT
GGCATAGAGATGGTGCGTGGTCTCGTGACGCTAGACTGGACTAGCCCGAG
CGCCTGACATTTGACAAGTGCTCATGCCATCGGAAGGCGACGGTCCCGAA
GCGCATATCCTGCATTTGCGCGAAAAGTTGAAGGCTGTGGAGGCAAGGCG
CATCACACTGCACCGCCGACGAGCCCTTGTAGAGAAGAAACGGCGCCGGC
TTCAAGGTCTTCTTGATCTGTGGCAATCACTTAACAATTCGGCAGCAGAG
GCGCTGCTTGATTTGTCCGAAAGCCATCAAGCAACACATGGTTCAGAACT
TAGTGCAGGGGCACGACTCGAGGCGTTAACACAATTGAATGTCGCCAACG
ATTGTTTTCACGTGTGGCATTCAGGGCCCTTTGCCACGATGAATGGCTGC
AGTATCGGTCGACTGCCCGCTTTCGCGGCAGTGGAGTGGACAGACATCAA
CGCCGGACTCGGGCAGGCGATCCTTTTGCTTGACACACTAGTGAAGCAAA
CAGGCTTCCGCTTTCGTCGCCTCGAGCTCGTGCCATTCGGCTCCTTTTCC
AAGATCTTGAGATCCCCATGTGACTTGTCGGACGTGGAGACGAAGTTGAT
GCCGAACAGTCCTCGAATCACCGCCAGCAATGCCATGAGTTTCTACTACG
ACGAGGCCAACCTGGCGTTTTTCCCTCGTCGGAACATGAATGCGGCGCTG
GTTGCATTCCTGCAGTGCGTGGAGGAGTTCGGATCCCACGTGGAGGGGCT
AGACCCCACGATCCGCCTCCCGCACAGGGTGCAGGGCAACAAGATCGGCG
GTCTACCCATCGTCTTGACGCCCGGCGAAGAGGACACATGGAACCGAGCT
CTCAAGTACCTATTGACAGACCTGAAATGGCTCTCGGCCTGGAGTGCTCG
ACATGTACTGCTGTAAAGATTGATTCCTGTCCACGCAAAGCTCTGAACCG
TGAAAGCAACTCGAACGATCCTAAATGTTACTCCCCCGTTATCTACTTCT
TTTGCGATTCCTTCCACTTAAGATTTTTGCAGGTGCTTGATCTGTACTCG
CAATGTATAGCACAAGACTTAAATTGAGGTCCCCGCTCGACTATTTACCC
CCGTGCAGATAAGCAAAATGCTGTCGATCAGCAATTCT
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Coding sequence (CDS) from alignment at CM002466.1:309961..311298+

>rna5570 ID=rna5570|Name=rna5570|organism=Nannochloropsis gaditana|type=CDS|length=843bp|location=Sequence derived from alignment at CM002466.1:309961..311298+ (Nannochloropsis gaditana)
ATGCCATCGGAAGGCGACGGTCCCGAAGCGCATATCCTGCATTTGCGCGA
AAAGTTGAAGGCTGTGGAGGCAAGGCGCATCACACTGCACCGCCGACGAG
CCCTTGTAGAGAAGAAACGGCGCCGGCTTCAAGGTCTTCTTGATCTGTGG
CAATCACTTAACAATTCGGCAGCAGAGGCGCTGCTTGATTTGTCCGAAAG
CCATCAAGCAACACATGGTTCAGAACTTAGTGCAGGGGCACGACTCGAGG
CGTTAACACAATTGAATGTCGCCAACGATTGTTTTCACGTGTGGCATTCA
GGGCCCTTTGCCACGATGAATGGCTGCAGTATCGGTCGACTGCCCGCTTT
CGCGGCAGTGGAGTGGACAGACATCAACGCCGGACTCGGGCAGGCGATCC
TTTTGCTTGACACACTAGTGAAGCAAACAGGCTTCCGCTTTCGTCGCCTC
GAGCTCGTGCCATTCGGCTCCTTTTCCAAGATCTTGAGATCCCCATGTGA
CTTGTCGGACGTGGAGACGAAGTTGATGCCGAACAGTCCTCGAATCACCG
CCAGCAATGCCATGAGTTTCTACTACGACGAGGCCAACCTGGCGTTTTTC
CCTCGTCGGAACATGAATGCGGCGCTGGTTGCATTCCTGCAGTGCGTGGA
GGAGTTCGGATCCCACGTGGAGGGGCTAGACCCCACGATCCGCCTCCCGC
ACAGGGTGCAGGGCAACAAGATCGGCGGTCTACCCATCGTCTTGACGCCC
GGCGAAGAGGACACATGGAACCGAGCTCTCAAGTACCTATTGACAGACCT
GAAATGGCTCTCGGCCTGGAGTGCTCGACATGTACTGCTGTAA
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Synonyms
Publications