EWM25124.1, cds5556 (CDS) Nannochloropsis gaditana

Overview
NameEWM25124.1
Unique Namecds5556
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:310234..311076 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25124.1
Productbeclin 1
Orig transcript idgnl|cribi|Naga_100016g38.2933.mrna
GeneAtg6
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:310234..311076 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0006914autophagy
Vocabulary: INTERPRO
TermDefinition
IPR007243Atg6/Beclin
Homology
BLAST of EWM25124.1 vs. NCBI_GenBank
Match: gi|585106762|gb|EWM25124.1| (beclin 1 [Nannochloropsis gaditana])

HSP 1 Score: 574.704 bits (1480), Expect = 0.000e+0
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0
Query:    1 MPSEGDGPEAHILHLREKLKAVEARRITLHRRRALVEKKRRRLQGLLDLWQSLNNSAAEALLDLSESHQATHGSELSAGARLEALTQLNVANDCFHVWHSGPFATMNGCSIGRLPAFAAVEWTDINAGLGQAILLLDTLVKQTGFRFRRLELVPFGSFSKILRSPCDLSDVETKLMPNSPRITASNAMSFYYDEANLAFFPRRNMNAALVAFLQCVEEFGSHVEGLDPTIRLPHRVQGNKIGGLPIVLTPGEEDTWNRALKYLLTDLKWLSAWSARHVLL 280
            MPSEGDGPEAHILHLREKLKAVEARRITLHRRRALVEKKRRRLQGLLDLWQSLNNSAAEALLDLSESHQATHGSELSAGARLEALTQLNVANDCFHVWHSGPFATMNGCSIGRLPAFAAVEWTDINAGLGQAILLLDTLVKQTGFRFRRLELVPFGSFSKILRSPCDLSDVETKLMPNSPRITASNAMSFYYDEANLAFFPRRNMNAALVAFLQCVEEFGSHVEGLDPTIRLPHRVQGNKIGGLPIVLTPGEEDTWNRALKYLLTDLKWLSAWSARHVLL
Sbjct:    1 MPSEGDGPEAHILHLREKLKAVEARRITLHRRRALVEKKRRRLQGLLDLWQSLNNSAAEALLDLSESHQATHGSELSAGARLEALTQLNVANDCFHVWHSGPFATMNGCSIGRLPAFAAVEWTDINAGLGQAILLLDTLVKQTGFRFRRLELVPFGSFSKILRSPCDLSDVETKLMPNSPRITASNAMSFYYDEANLAFFPRRNMNAALVAFLQCVEEFGSHVEGLDPTIRLPHRVQGNKIGGLPIVLTPGEEDTWNRALKYLLTDLKWLSAWSARHVLL 280          
BLAST of EWM25124.1 vs. NCBI_GenBank
Match: gi|553196242|ref|XP_005856298.1| (beclin 1, partial [Nannochloropsis gaditana CCMP526] >gi|422292776|gb|EKU20078.1| beclin 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 342.043 bits (876), Expect = 1.888e-115
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0
Query:    1 MPSEGDGPEAHILHLREKLKAVEARRITLHRRRALVEKKRRRLQGLLDLWQSLNNSAAEALLDLSESHQATHGSELSAGARLEALTQLNVANDCFHVWHSGPFATMNGCSIGRLPAFAAVEWTDINAGLGQAILLLDTLVKQTGFRFRRLELVPFGSFSKILRSPCDL 168
            MPSEGDGPEAHILHLREKLKAVEARRITLHRRRALVEKKRRRLQGLLDLWQSLNNSAAEALLDLSESHQATHGSELSAGARLEALTQLNVANDCFHVWHSGPFATMNGCSIGRLPAFAAVEWTDINAGLGQAILLLDTLVKQTGFRFRRLELVPFGSFSKILRSPCDL
Sbjct:    1 MPSEGDGPEAHILHLREKLKAVEARRITLHRRRALVEKKRRRLQGLLDLWQSLNNSAAEALLDLSESHQATHGSELSAGARLEALTQLNVANDCFHVWHSGPFATMNGCSIGRLPAFAAVEWTDINAGLGQAILLLDTLVKQTGFRFRRLELVPFGSFSKILRSPCDL 168          
BLAST of EWM25124.1 vs. NCBI_GenBank
Match: gi|298705864|emb|CBJ29009.1| (Beclin [Ectocarpus siliculosus])

HSP 1 Score: 170.244 bits (430), Expect = 1.346e-46
Identity = 98/257 (38.13%), Postives = 141/257 (54.86%), Query Frame = 0
Query:   24 ARRITLHRRRALVEKKRRRLQGLLDLWQSLNNSAAEALLDLSESHQATHGSELSAGARLEALTQLNVANDCFHVWHSGPFATMNGCSIGRLPAFAAVEWTDINAGLGQAILLLDTLVKQTGFRFRRLELVPFGSFSKILRSPCDLSDVETKLMPNSPRITASNAMSFYYDEANLAFFPRRNMNAALVAFLQCVEEFGSHVEGLDPTIRLPHRVQGNK--IGGLPIVLTPGEEDTWNRALKYLLTDLKWLSAWSARHV 278
            +RRI L  RR+ V + R+  +                      S +A +  +L +  R+ AL      NDCFH+WH GPF T+NG  +GRL     V+W ++NAG+GQA ++L T+    G  F +  + P GSF+KI RS                R+      S + DE + + FPRRN N AL AFL C+ E G HV+  DPT+RLP+ ++  +  +GGLP+ L    ED W RALKY+LTDLKW++AW+A+++
Sbjct:  205 SRRIALDSRRSDVAEARQNCR----------------------SRKALYSEQLVSAMRMGAL------NDCFHIWHQGPFGTINGFRVGRLNTHV-VDWQEVNAGVGQAAIVLVTVAMAMGVEFTKYLIAPCGSFTKIARS-------------EDGRVL----YSLHTDE-SFSLFPRRNFNFALKAFLHCLGEVGDHVQEHDPTLRLPYHIKEKEGTVGGLPVALGSSYED-WTRALKYMLTDLKWIAAWAAKYL 413          
BLAST of EWM25124.1 vs. NCBI_GenBank
Match: gi|1026987182|ref|XP_016608509.1| (hypothetical protein SPPG_04786 [Spizellomyces punctatus DAOM BR117] >gi|907094726|gb|KND00470.1| hypothetical protein SPPG_04786 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 164.851 bits (416), Expect = 4.934e-44
Identity = 94/275 (34.18%), Postives = 144/275 (52.36%), Query Frame = 0
Query:    9 EAHILHLREK-------LKAVEARRITLHRRRALVEKKRRRLQGL-LDLWQSLNNSAAEALLDLSESHQATHGSELSAGARLEALTQLNVANDCFHVWHSGPFATMNGCSIGRLPAFAAVEWTDINAGLGQAILLLDTLVKQTGFRFRRLELVPFGSFSKILRSPCDLSDVETKLMPNSPRITASNAMSFYYDEANLA--FFPRRNMNAALVAFLQCVEEFGSHVEGLDPTIRLPHRVQGNKIGGLPIVLTPGEEDTWNRALKYLLTDLKWLSAW 273
            EA ++ L+E+       LK +E  ++ L     + + +   +  L L+ WQ +N+   E     +E        E  +  +LE L + NV ND F +WH GPF T+NG  +GRLP    V+W++INA +GQA+LLLDT+  +  F F+   LVP GSFS+I ++  D                    +   Y   +L    F  R  + ALV+FL C+++ G + E  DP  RLP+R+  +KIG   I L   +++ W +ALKY+L DLKW+ A+
Sbjct:  208 EADVVMLKEQERNALDVLKDLEKEKVALKEELEVAKTELEEVDALKLNYWQEINSLQDELQKYYNERDSVNLNYEYVSN-QLEKLKKTNVYNDTFRIWHDGPFGTINGFRMGRLPN-QPVDWSEINAAMGQALLLLDTMASKLNFTFKGYRLVPMGSFSRIEKTDGD------------------KGVHELYGSGDLKGMLFWNRRFDNALVSFLNCLQQIGDYAEQRDPKFRLPYRISKDKIGDTSIRLQFNQDEAWTKALKYMLIDLKWILAF 462          
BLAST of EWM25124.1 vs. NCBI_GenBank
Match: gi|953488727|emb|CEG47593.1| (beclin-1-like protein [Plasmopara halstedii])

HSP 1 Score: 167.162 bits (422), Expect = 6.200e-44
Identity = 106/278 (38.13%), Postives = 146/278 (52.52%), Query Frame = 0
Query:    6 DGPEAHILHLREKLKAVEARRITLHRRRALVEKKRRRLQGL-LDLWQSLNNSAAEA-----LLDLS-ESHQATHGSELSAGARLEALTQLNVANDCFHVWHSGPFATMNGCSIGRLPAFAAVEWTDINAGLGQAILLLDTLVKQTGFRFRRLELVPFGSFSKILRSPCDLSDVETKLMPNSPRITASNAMSFYYDEANLAFFPRRNMNAALVAFLQCVEEFGSHVEGLDPTIRLPHRVQGNKIGGLPIVLTPGEEDTWNRALKYLLTDLKWLSAWSAR 276
            D PE   L L+E+ + + A+   +      V  KRR L    +DL Q ++ + AE      LL LS +  Q+     + A   L  L + NV ND FH+WH G F T+NG  +GRLP    VEW +INA LGQA+LLL T+  +  F F R  LVP GSFS+++                          S Y D      F RR  N A++ FL+CVE+ G      +P+++ P++V+  KIGGLPI L  G ++ W RALKY+LT LKWL AW ++
Sbjct:  366 DDPE--FLALQEEERVLNAQLRAIEDETLQVTAKRRELWSTGMDLEQLIHGTFAEGAFLQHLLGLSRDERQSVSVFAVHASDMLRRLQRYNVCNDVFHIWHDGLFGTINGLRLGRLP-LKPVEWVEINAALGQAVLLLATIADRANFEFSRNRLVPRGSFSRVVN-------------------MYGKEYSLYSDG---GMFRRRGFNQAMILFLECVEDAGRRAMKEEPSLKFPYKVERGKIGGLPISL--GNDEQWTRALKYMLTHLKWLLAWISK 616          
BLAST of EWM25124.1 vs. NCBI_GenBank
Match: gi|970659578|gb|KUF97206.1| (hypothetical protein AM588_10006678 [Phytophthora nicotianae])

HSP 1 Score: 162.925 bits (411), Expect = 2.743e-43
Identity = 99/248 (39.92%), Postives = 134/248 (54.03%), Query Frame = 0
Query:   36 VEKKRRRLQGL-LDLWQSLNNSAAEA-----LLDLSESHQATHGS-ELSAGARLEALTQLNVANDCFHVWHSGPFATMNGCSIGRLPAFAAVEWTDINAGLGQAILLLDTLVKQTGFRFRRLELVPFGSFSKILRSPCDLSDVETKLMPNSPRITASNAMSFYYDEANLAFFPRRNMNAALVAFLQCVEEFGSHVEGLDPTIRLPHRVQGNKIGGLPIVLTPGEEDTWNRALKYLLTDLKWLSAWSAR 276
            V  KRR L    +DL Q ++ + AE      LL LS   + + G   + A   L  L + NV ND FH+WH G F T+NG  +GRLP+   VEW +INA LGQA+LLL T+  +  F F R  LVP GSFS+++                          S Y D      F RR  N A++ FL+CVE+ G      +P+++ P++V+  KIGGLPI L  G ++ W RALKY+LT LKWL AW ++
Sbjct:  246 VTAKRRELWSTGMDLEQLIHGTFAEGAFLQHLLGLSRDERQSVGVFAVHASDMLRRLQRYNVCNDVFHIWHDGLFGTINGLRLGRLPS-KPVEWVEINAALGQAVLLLATIADRANFEFSRNRLVPRGSFSRVVN-------------------MYGKEYSLYSDG---GMFRRRGFNQAMILFLECVEDAGRRAMKEEPSLKFPYKVERGKIGGLPISL--GNDEQWTRALKYMLTHLKWLLAWISK 468          
BLAST of EWM25124.1 vs. NCBI_GenBank
Match: gi|970639630|gb|KUF82566.1| (Beclin-1 protein [Phytophthora nicotianae])

HSP 1 Score: 162.925 bits (411), Expect = 9.884e-43
Identity = 99/248 (39.92%), Postives = 134/248 (54.03%), Query Frame = 0
Query:   36 VEKKRRRLQGL-LDLWQSLNNSAAEA-----LLDLSESHQATHGS-ELSAGARLEALTQLNVANDCFHVWHSGPFATMNGCSIGRLPAFAAVEWTDINAGLGQAILLLDTLVKQTGFRFRRLELVPFGSFSKILRSPCDLSDVETKLMPNSPRITASNAMSFYYDEANLAFFPRRNMNAALVAFLQCVEEFGSHVEGLDPTIRLPHRVQGNKIGGLPIVLTPGEEDTWNRALKYLLTDLKWLSAWSAR 276
            V  KRR L    +DL Q ++ + AE      LL LS   + + G   + A   L  L + NV ND FH+WH G F T+NG  +GRLP+   VEW +INA LGQA+LLL T+  +  F F R  LVP GSFS+++                          S Y D      F RR  N A++ FL+CVE+ G      +P+++ P++V+  KIGGLPI L  G ++ W RALKY+LT LKWL AW ++
Sbjct:  340 VTAKRRELWSTGMDLEQLIHGTFAEGAFLQHLLGLSRDERQSVGVFAVHASDMLRRLQRYNVCNDVFHIWHDGLFGTINGLRLGRLPS-KPVEWVEINAALGQAVLLLATIADRANFEFSRNRLVPRGSFSRVVN-------------------MYGKEYSLYSDG---GMFRRRGFNQAMILFLECVEDAGRRAMKEEPSLKFPYKVERGKIGGLPISL--GNDEQWTRALKYMLTHLKWLLAWISK 562          
BLAST of EWM25124.1 vs. NCBI_GenBank
Match: gi|970618298|gb|KUF66358.1| (Beclin-1 protein [Phytophthora nicotianae])

HSP 1 Score: 162.925 bits (411), Expect = 1.081e-42
Identity = 102/268 (38.06%), Postives = 142/268 (52.99%), Query Frame = 0
Query:   16 REKLKAVEARRITLHRRRALVEKKRRRLQGL-LDLWQSLNNSAAEA-----LLDLSESHQATHGS-ELSAGARLEALTQLNVANDCFHVWHSGPFATMNGCSIGRLPAFAAVEWTDINAGLGQAILLLDTLVKQTGFRFRRLELVPFGSFSKILRSPCDLSDVETKLMPNSPRITASNAMSFYYDEANLAFFPRRNMNAALVAFLQCVEEFGSHVEGLDPTIRLPHRVQGNKIGGLPIVLTPGEEDTWNRALKYLLTDLKWLSAWSAR 276
            + +L+A+E   +        V  KRR L    +DL Q ++ + AE      LL LS   + + G   + A   L  L + NV ND FH+WH G F T+NG  +GRLP+   VEW +INA LGQA+LLL T+  +  F F R  LVP GSFS+++                          S Y D      F RR  N A++ FL+CVE+ G      +P+++ P++V+  KIGGLPI L  G ++ W RALKY+LT LKWL AW ++
Sbjct:  314 KAELEAIEDETVQ-------VTAKRRELWSTGMDLEQLIHGTFAEGAFLQHLLGLSRDERQSVGVFAVHASDMLRRLQRYNVCNDVFHIWHDGLFGTINGLRLGRLPS-KPVEWVEINAALGQAVLLLATIADRANFEFSRNRLVPRGSFSRVVN-------------------MYGKEYSLYSDG---GMFRRRGFNQAMILFLECVEDAGRRAMKEEPSLKFPYKVERGKIGGLPISL--GNDEQWTRALKYMLTHLKWLLAWISK 549          
BLAST of EWM25124.1 vs. NCBI_GenBank
Match: gi|568039367|gb|ETM36863.1| (hypothetical protein L914_16512 [Phytophthora parasitica])

HSP 1 Score: 162.925 bits (411), Expect = 2.321e-42
Identity = 102/268 (38.06%), Postives = 142/268 (52.99%), Query Frame = 0
Query:   16 REKLKAVEARRITLHRRRALVEKKRRRLQGL-LDLWQSLNNSAAEA-----LLDLSESHQATHGS-ELSAGARLEALTQLNVANDCFHVWHSGPFATMNGCSIGRLPAFAAVEWTDINAGLGQAILLLDTLVKQTGFRFRRLELVPFGSFSKILRSPCDLSDVETKLMPNSPRITASNAMSFYYDEANLAFFPRRNMNAALVAFLQCVEEFGSHVEGLDPTIRLPHRVQGNKIGGLPIVLTPGEEDTWNRALKYLLTDLKWLSAWSAR 276
            + +L+A+E   +        V  KRR L    +DL Q ++ + AE      LL LS   + + G   + A   L  L + NV ND FH+WH G F T+NG  +GRLP+   VEW +INA LGQA+LLL T+  +  F F R  LVP GSFS+++                          S Y D      F RR  N A++ FL+CVE+ G      +P+++ P++V+  KIGGLPI L  G ++ W RALKY+LT LKWL AW ++
Sbjct:  389 KAELEAIEDETVQ-------VTAKRRELWSTGMDLEQLIHGTFAEGAFLQHLLGLSRDERQSVGVFAVHASDMLRRLQRYNVCNDVFHIWHDGLFGTINGLRLGRLPS-KPVEWVEINAALGQAVLLLATIADRANFEFSRNRLVPRGSFSRVVN-------------------MYGKEYSLYSDG---GMFRRRGFNQAMILFLECVEDAGRRAMKEEPSLKFPYKVERGKIGGLPISL--GNDEQWTRALKYMLTHLKWLLAWISK 624          
BLAST of EWM25124.1 vs. NCBI_GenBank
Match: gi|570971579|gb|ETP34698.1| (hypothetical protein F442_17010 [Phytophthora parasitica P10297])

HSP 1 Score: 162.925 bits (411), Expect = 2.569e-42
Identity = 102/268 (38.06%), Postives = 142/268 (52.99%), Query Frame = 0
Query:   16 REKLKAVEARRITLHRRRALVEKKRRRLQGL-LDLWQSLNNSAAEA-----LLDLSESHQATHGS-ELSAGARLEALTQLNVANDCFHVWHSGPFATMNGCSIGRLPAFAAVEWTDINAGLGQAILLLDTLVKQTGFRFRRLELVPFGSFSKILRSPCDLSDVETKLMPNSPRITASNAMSFYYDEANLAFFPRRNMNAALVAFLQCVEEFGSHVEGLDPTIRLPHRVQGNKIGGLPIVLTPGEEDTWNRALKYLLTDLKWLSAWSAR 276
            + +L+A+E   +        V  KRR L    +DL Q ++ + AE      LL LS   + + G   + A   L  L + NV ND FH+WH G F T+NG  +GRLP+   VEW +INA LGQA+LLL T+  +  F F R  LVP GSFS+++                          S Y D      F RR  N A++ FL+CVE+ G      +P+++ P++V+  KIGGLPI L  G ++ W RALKY+LT LKWL AW ++
Sbjct:  389 KAELEAIEDETVQ-------VTAKRRELWSTGMDLEQLIHGTFAEGAFLQHLLGLSRDERQSVGVFAVHASDMLRRLQRYNVCNDVFHIWHDGLFGTINGLRLGRLPS-KPVEWVEINAALGQAVLLLATIADRANFEFSRNRLVPRGSFSRVVN-------------------MYGKEYSLYSDG---GMFRRRGFNQAMILFLECVEDAGRRAMKEEPSLKFPYKVERGKIGGLPISL--GNDEQWTRALKYMLTHLKWLLAWISK 624          
The following BLAST results are available for this feature:
BLAST of EWM25124.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106762|gb|EWM25124.1|0.000e+0100.00beclin 1 [Nannochloropsis gaditana][more]
gi|553196242|ref|XP_005856298.1|1.888e-115100.00beclin 1, partial [Nannochloropsis gaditana CCMP52... [more]
gi|298705864|emb|CBJ29009.1|1.346e-4638.13Beclin [Ectocarpus siliculosus][more]
gi|1026987182|ref|XP_016608509.1|4.934e-4434.18hypothetical protein SPPG_04786 [Spizellomyces pun... [more]
gi|953488727|emb|CEG47593.1|6.200e-4438.13beclin-1-like protein [Plasmopara halstedii][more]
gi|970659578|gb|KUF97206.1|2.743e-4339.92hypothetical protein AM588_10006678 [Phytophthora ... [more]
gi|970639630|gb|KUF82566.1|9.884e-4339.92Beclin-1 protein [Phytophthora nicotianae][more]
gi|970618298|gb|KUF66358.1|1.081e-4238.06Beclin-1 protein [Phytophthora nicotianae][more]
gi|568039367|gb|ETM36863.1|2.321e-4238.06hypothetical protein L914_16512 [Phytophthora para... [more]
gi|570971579|gb|ETP34698.1|2.569e-4238.06hypothetical protein F442_17010 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5570rna5570Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications