rna5565, rna5565 (mRNA) Nannochloropsis gaditana

Overview
Namerna5565
Unique Namerna5565
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1719
Alignment locationCM002466.1:297604..301431 +

Link to JBrowse

Properties
Property NameValue
Productpre-mrna-splicing factor atp-dependent rna helicase dhx16
Orig transcript idgnl|cribi|Naga_100016g43.2913.mrna
Orig protein idgnl|cribi|Naga_100016g43.2913
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:297604..301431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100016g43gene5378Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5565rna5565-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25104.1cds5551Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5565 ID=rna5565|Name=rna5565|organism=Nannochloropsis gaditana|type=mRNA|length=1719bp
GATGCCCAAAGCCATGGCCACGGCCTCGACCTCGCCAGCCCTCGCTCCCG
TTCGGGTACACTCCTGTTTCCTGCCCGGCCGCGGGCCATTGTTTACTATG
AACACGCTGGGCATGGTTCTACGAATTGGATGACGGATCACGTTCACGTA
GTAAAAGTCGTTAAATGTCATTCCTCGCGTTTCTTCTTTTTTAAGATTTA
ACTTTGATTACACTTATCAGGTACTTGGTGAGAGCGACATATTTTTCCTC
AAGCAGCATTGGAAGGCCATAATCCCCATACATGAAAAGCAATGAGCTCA
TCGCCTGTAGTCATTCCGTTCTTTCTGAAGGGAACGAGGCCATACCCTGC
GAAACGCGTAGTCCCGTGGACATAATAACTCCCAACGCGTCAAGGACCTC
CCAGCTCAACACCCCCGAGCAACGCCTGCGAGACGAACACAACAGCGACG
AAGGAACGACTATGATTGATTTGACTGGCAACAGTCCAGGTGTCGTGGAT
ATCTCGGTGCATTCTCCTCCATCAGCCATCGAAGCGACAGAGGATGTGAG
AACGGCAGGCGGATGGAGTTGTGATTCAGGAGAAGTCTCCGACCGCACTG
ACGTGCATGGGGAGGGGGTAGTGCGGGAAGGACACGCTCAAGAGGGTAGA
TGCCACACCAACACGCATGGGCCTATGGGTAGTACGGGACATGGAGTGGA
CCCTGCCGAAAGAGGGGGAGAGAAAGGAGACCCTGGCGAGGACGACAGCG
TCCAGGTCCAGTGCCCCGTGTGCACATTTAACAACCCCCCGAGCATGGAC
CTGTGCCAGATGTGTGTGCATCCCTTGACAATAGGCCTAGCAGGGCGTGT
GCTGCATGTCCAGCACGGCCGAGTAGGTGGTGGTGGGAGGGGGAGAGAGA
GCGGTTGCGGGGGGGCGGGGGATGAGGACCTGCCTGCCTTGTGGACCTGT
CCCCTCTGCACGTTCTGCGGCAACCGGCGTGGCAACTGGGTGTGCCAGGC
GTGTGAGATGGGGCGTCCTCGGCGCCAGGACATGCTAGACGCCGAGAGCG
AGGAGGGCTACTTGATGGTGTCGGAGGGTACGGTCCGAGGGAGAGCGGGC
AGGCCGGGCCCCCGGGGCCGCAGTCCAGCCCGGGCGGGAGGGAGGGTCGC
CGATACCTCCATGCAGACGTTGGAGGATGTGGTGAGAGGGGCGCTCCTGG
GGTCTGGGGTGGCGGGAGTAGGGTCAGCTGTGGCCGGCGGCTCTCGCTCG
GAGCACAGACGCCGCGCTTTCATCGGGGGCGTGGTGGGAGGGCTGGGGGC
GGGGCTGTTGGGGGGGGTACATGCGGCGGATGAGGGAGGAGGGGGACGCC
ATAGACTCCATGTCGTACGACGACTTGCTTTCCCTGTTTGGGCCTGGGCA
CGAGCCGATCAAAGCGACTGCTGCGACCGTCTGCGCCCTCCCAGAGATCA
CCGTCCAGGCCGCAGACGTGGCGCGGATGCGGCGCGAAAGCATCAATGAC
ACCCACGGCTGCAGCATCTGCATGGAAGACTTTGCTGAGGGGGACGTGAC
TCGGCGCCTGCCTTGCCTGCACATGTATCACAAGGAATGCATCGACCGCT
GGCTCCTCCAGTGCAACGCCACCTGTCCCATTTGCAAGGCTCCCTGCGGC
TAGCAGGAGCGATCTTGATTGAGAGCACAGCCCGTGAAAGCCAAAGCAAA
TTGTAAAATGTATACGAAG
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protein sequence of rna5565

>rna5565-protein ID=rna5565-protein|Name=rna5565|organism=Nannochloropsis gaditana|type=polypeptide|length=1119bp
MDVEEWLCTELHDVVGYSDKTLSQFILSLAKRAPSAAALHVQLIGSGIEE
GPRTRPFAEALFQRMRSQGGKVGKGVARNAGGVGGRAAASVGERRLTNAE
LIRQSQRYSLVESDDEDYKRAISGTGDGNGTNGGKRRKEEKKEKREKKER
QARKKTAEIEEDEEEDISLVRKRVREVTSGAVMDAKEKGEDERKQEELDE
DIRERDAFVQRMLEKEDMKTQQKASGGGLSAEQIKELATTGAVSKEGEEY
LDEARKVSRREYLKKREEKELALIEKELREEEFLFGDVEITAEEKQRREV
KRKVLEMAKEKDRFEREHRGYRMPEAYETADGKLDTSKRDAALTARYQEE
EQYKTEQELWEEQQVSVASFRPGAKDKGAAQKDLTAEEAELEEFMFENQI
DFVSDQLLNNKLAKSKKQRTKKKEKGGEQERLSSTEESSEDEGQDEEQWL
AQARAPMTEFEKLQAGRKRLPVFRYREEILAAIKDHQVLVLSAETGSGKT
TQIPQYLHEVGYTQAGMIACTQPRRVAAMSVAARVSQEMGTKIGQEVGYS
IRFENCTSEKTVIKYMTDGMLLREFLTEPDMASYSVVIIDEAHERTLHTD
VLLGLCKDIARFREDLRLIISSATLNAERFSNYFDGAAIFTVPGRIFSVD
VYYTKAPEADYLDAAVVSVLHIHISQPVPGDILVFLTGQEEIETAAEELT
KRTKGLGSRIKELIICPIYATLPSEQQAKIFEKAPPNARKVVLATNIAET
SLTIDGICFVVDTGFCKQKSYNPRSGMESLIVTPVSRAAAEQRKGRAGRT
QNGKCFRLFTMWAFQNELDEDTVPEIQRTNMGNVVLMLMSLGINNILQFD
FMDKPPTEAIMQALQQLYALAAINERGELTKLGRRMAEFPLEPMHSKALL
ASEKYKCVDDVITILAMLTVGNSIFYRPKDRAVHADNARFNFARGGGGDH
LALLRCYQQWEESNFSTQWCYENFVQIRSMKKARDIREQLTGLCERVEIE
SVSSVDIDDIRKAITAGFFFNCASLTRSQDYQTLKHAHTVYIHPSSVLAK
DQREGVLHSHLVYHELAFTSKEYMRSITPIQPQWLLEVAQHYYDAASIQD
LSQKKKVPKAVGKAPETNR
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mRNA from alignment at CM002466.1:297604..301431+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5565 ID=rna5565|Name=rna5565|organism=Nannochloropsis gaditana|type=mRNA|length=3828bp|location=Sequence derived from alignment at CM002466.1:297604..301431+ (Nannochloropsis gaditana)
TGTCACGTACTAGCCATCTCATCCAACTTTCCCTTTATTTGCACCCACAA AGCGCGAAGAATCACCCTGGGTATGGACGTCGAAGAGTGGCTTTGTACGG AATTGCATGATGTGGTGGGTTACAGCGACAAAACGCTCAGCCAATTTATT CTCTCCCTGGCTAAGCGGGCCCCTTCTGCGGCTGCTCTACACGTCCAGCT GATAGGCAGCGGAATTGAGGAGGGTCCGAGGACCCGTCCTTTCGCCGAGG CGCTTTTCCAACGTATGAGGTCTCAAGGTGGAAAGGTTGGCAAGGGGGTG GCTCGAAATGCCGGGGGTGTGGGAGGTAGAGCTGCGGCATCTGTAGGAGA GAGGCGGCTTACCAACGCCGAGCTCATCCGCCAGAGCCAGCGATACTCCC TGGTTGAAAGTGACGACGAGGACTATAAGCGAGCGATCAGTGGCACTGGT GATGGTAATGGGACTAAcggagggaagcgaaggaaggaggagaagaagga gaaacgggaaaagaaggagaggcaggcgcGCAAGAAGACAGCTGAgatcg aggaagacgaggaggaggacatctCACTGGTGCGAAAGCGCGTGCGCGAG GTCACTTCTGGCGCGGTTATGGAcgcaaaagaaaagggcgAAGACGAAAG AAAACAAGAAGAGTTGGATGAAGACATCCGGGAACGAGACGCGTTCGTCC AGCGTATgctcgagaaagaggacatgAAGACGCAACAGAAAGCATCGGGG GGAGGCCTGTCGGCAGAGCAGATCAAGGAACTTGCCACGACAGGAGCCGT GtcaaaagagggggaggagtaTCTGGACGAGGCGCGTAAAGTGTCGCGGC GAGAGTACttgaagaagcgggaggagaaggagctaGCGTTAATCGAGAAG GAGCTTCGAGAAGAAGAGTTCCTCTTCGGGGATGTAGAGATCACGGCCGA GGAAAAGCAACGCCGCGAAGTGAAGCGGAAGGTGTTGGAGATGGccaagg aaaaagacaggTTCGAAAGGGAGCACCGGGGCTACCGCATGCCCGAAGCC TACGAGACCGCCGACGGGAAGCTGGACACATCCAAGCGGGACGCAGCCTT GACGGCCCGctaccaggaggaggagcagtaCAAGACGGAGCAGGAGCtct gggaggagcagcaggtgAGCGTGGCCTCCTTTCGGCCGGGCGCCAAGGAT AAGGGCGCGGCCCAGAAGGATttgacggcggaggaagctgaaTTGGAGGA ATTTATGTTTGAAAATCAGATCGATTTTGTGTCGGATCAACTGTTGAACA ACAAACTCGCGAAATCCAAGAAGCAGCGgacgaagaaaaaggagaagggt ggcGAGCAGGAGAGGTTGAGTAGCACTGAGGAGTCAtcggaggacgaagg ccaagacgaggagcagTGGCTGGCGCAGGCGCGCGCCCCTATGACCGAAT TTGAAAAGCtccaggcgggaaggaagagactGCCGGTGTTTCGGTACCGG GAAGAGATCCTGGCCGCCATCAAGGACCATCAAGTGCTGGTCTTGTCGGC CGAGACAGGctcggggaagacgacgcaGATCCCGCAGTACTTGCACGAGG TGGGCTACACCCAGGCGGGCATGATCGCATGCACTCAGCCTCGCCGCGTG GCCGCCATGAGCGTGGCGGCCCGAGTTTCGCAGGAAATGGGGACCAAGAT CGGCCAGGAGGTGGGTTACTCCATCCGCTTTGAGAACTGCACTTCGGAGA AGACAGTGATCAAGTACATGACAGACGGCATGCTGCTTCGCGAGTTTTTG ACGGAGCCGGACATGGCCTCGTACTCGGTGGTCATCATCGACGAGGCCCA CGAGCGGACGCTCCACACCGACGTCCTCCTAGGCCTCTGCAAAGACATTG CTCGCTTCCGAGAGGACCTGCGCCTGATcatctcctcggccacgcTCAAC GCGGAGCGATTCTCGAACTATTTTGACGGGGCTGCCATCTTCACGGTCCC AGGCCGCATCTTCAGCGTTGATGTGTACTACACCAAGGCGCCCGAGGCCG ACTATCTGGATGCAGCTGTGGTTTCTGTACTGCACATCCACATCTCTCAG CCCGTCCCTGGGGACATACTGGTTTTCCTGacagggcaggaggagatcga gacGGCGGCAGAAGAACTCACCAAGCGCACTAAAGGTCTGGGCTCGCGCA TCAAGGAGCTAATAATTTGTCCCATCTATGCGACGCTGCCTTCAGAGCAG CAGGCAAAAATTTTCGAGAAGGCCCCTCCGAACGCCCGTAAGGTTGTCCT GGCCACAAACATCGCCGAGACCTCTTTGACAATCGACGGAATCTGTTTCG TGGTGGACACTGGTTTTTGCAAACAAAAATCTTACAACCCGCGGTCGGGG ATGGAATCTCTCATCGTCACGCCCGTGTCAAGAGCGGCAGCCGAGCAACG CAAGGGcagggcgggcaggacgcAGAACGGCAAGTGCTTCCGGCTTTTCA CCATGTGGGCCTTCCAGAACGAGCTTGACGAGGACACGGTGCCAGAAATC CAGCGCACCAATATGGGGAACGTGGTGCTTATGCTCATGTCGCTGGGCAT CAACAACATTCTGCAGTTCGATTTCATGGACAAGCCCCCAACAGAAGCCA TCATGCAGGCACTTCAGCAGCTTTACGCATTGGCTGCGATCAACGAGCGA GGCGAGCTGACCAAGTTGGGACGTCGTATGGCCGAGTTCCCTCTGGAGCC CATGCATTCAAAGGCCTTGCTGGCGAGTGAGAAATACAAATGCGTCGACG ACGTGATCACGATCCTGGCGATGCTAACGGTGGGAAACTCAATCTTTTAC CGACCAAAGGACCGTGCCGTTCACGCTGACAATGCTCGCTTCAACTTTgc ccgcgggggaggaggggatcaTCTGGCCTTACTGCGGTGTTACCAGCAAT GGGAAGAGAGCAACTTCTCCACGCAGTGGTGCTACGAGAATTTTGTCCAA ATTCGCTCCATGAAGAAGGCGCGCGACATCCGAGAGCAGCTGACGGGCCT GTGCGAGCGTGTCGAGATTGAATCGGTGTCCTCTGTAGATATCGACGATA TACGGAAGGCCATCACGGCGGGTTTCTTCTTCAATTGCGCCTCGCTCACG CGCTCTCAGGACTATCAAACCTTAAAGCACGCCCACACTGTGTACATCCA CCCATCCTCAGTGCTGGCCAAGGACCAAAGAGAAGGCGTCCTACATTCTC ATCTGGTCTATCACGAGCTGGCCTTCACGTCAAAAGAGTACATGCGCTCT ATCACTCCGATTCAGCCTCAATGGCTCTTGGAAGTGGCGCAGCATTATTA CGACGCCGCCTCAATTCAAGACCTCTcccagaagaagaaggtgccCAAGG CGGTAGGGAAAGCTCCGGAGACCAACCGATAATCTACAGGTTCGAAAGTA GGAAGAAGTCACACATGGGGGTGAAGGGAGCACATATTCTGTATAGATGC ATTATGAGCTTTGTTTACCTTAGCAAAGAGCTTAGTTGATGGGCTTAAAA CAAATGGCTTTTTAAGATGAATATATCGAAAGTACTTTTTTGACTTCAGG TAAATACAAGACGGATTCTAATTGTCTGATGTTCCCCTTTTTCTAAATGT ATACGcactccttttccctgcgACTTTGACACTGTCTGTTAAAGCAATGC AAGCAAACTTGTTCGCAAGCCTGTGATCAATGTTAGTGGAAAACAACTGA TTTCAAGCCTGCATAGAGTGACGTGACCGTGCCAGTATACACACaacaag aggaggcgaaaaaaGCCAACTGCCTGTG
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Coding sequence (CDS) from alignment at CM002466.1:297604..301431+

>rna5565 ID=rna5565|Name=rna5565|organism=Nannochloropsis gaditana|type=CDS|length=3360bp|location=Sequence derived from alignment at CM002466.1:297604..301431+ (Nannochloropsis gaditana)
ATGGACGTCGAAGAGTGGCTTTGTACGGAATTGCATGATGTGGTGGGTTA
CAGCGACAAAACGCTCAGCCAATTTATTCTCTCCCTGGCTAAGCGGGCCC
CTTCTGCGGCTGCTCTACACGTCCAGCTGATAGGCAGCGGAATTGAGGAG
GGTCCGAGGACCCGTCCTTTCGCCGAGGCGCTTTTCCAACGTATGAGGTC
TCAAGGTGGAAAGGTTGGCAAGGGGGTGGCTCGAAATGCCGGGGGTGTGG
GAGGTAGAGCTGCGGCATCTGTAGGAGAGAGGCGGCTTACCAACGCCGAG
CTCATCCGCCAGAGCCAGCGATACTCCCTGGTTGAAAGTGACGACGAGGA
CTATAAGCGAGCGATCAGTGGCACTGGTGATGGTAATGGGACTAAcggag
ggaagcgaaggaaggaggagaagaaggagaaacgggaaaagaaggagagg
caggcgcGCAAGAAGACAGCTGAgatcgaggaagacgaggaggaggacat
ctCACTGGTGCGAAAGCGCGTGCGCGAGGTCACTTCTGGCGCGGTTATGG
AcgcaaaagaaaagggcgAAGACGAAAGAAAACAAGAAGAGTTGGATGAA
GACATCCGGGAACGAGACGCGTTCGTCCAGCGTATgctcgagaaagagga
catgAAGACGCAACAGAAAGCATCGGGGGGAGGCCTGTCGGCAGAGCAGA
TCAAGGAACTTGCCACGACAGGAGCCGTGtcaaaagagggggaggagtaT
CTGGACGAGGCGCGTAAAGTGTCGCGGCGAGAGTACttgaagaagcggga
ggagaaggagctaGCGTTAATCGAGAAGGAGCTTCGAGAAGAAGAGTTCC
TCTTCGGGGATGTAGAGATCACGGCCGAGGAAAAGCAACGCCGCGAAGTG
AAGCGGAAGGTGTTGGAGATGGccaaggaaaaagacaggTTCGAAAGGGA
GCACCGGGGCTACCGCATGCCCGAAGCCTACGAGACCGCCGACGGGAAGC
TGGACACATCCAAGCGGGACGCAGCCTTGACGGCCCGctaccaggaggag
gagcagtaCAAGACGGAGCAGGAGCtctgggaggagcagcaggtgAGCGT
GGCCTCCTTTCGGCCGGGCGCCAAGGATAAGGGCGCGGCCCAGAAGGATt
tgacggcggaggaagctgaaTTGGAGGAATTTATGTTTGAAAATCAGATC
GATTTTGTGTCGGATCAACTGTTGAACAACAAACTCGCGAAATCCAAGAA
GCAGCGgacgaagaaaaaggagaagggtggcGAGCAGGAGAGGTTGAGTA
GCACTGAGGAGTCAtcggaggacgaaggccaagacgaggagcagTGGCTG
GCGCAGGCGCGCGCCCCTATGACCGAATTTGAAAAGCtccaggcgggaag
gaagagactGCCGGTGTTTCGGTACCGGGAAGAGATCCTGGCCGCCATCA
AGGACCATCAAGTGCTGGTCTTGTCGGCCGAGACAGGctcggggaagacg
acgcaGATCCCGCAGTACTTGCACGAGGTGGGCTACACCCAGGCGGGCAT
GATCGCATGCACTCAGCCTCGCCGCGTGGCCGCCATGAGCGTGGCGGCCC
GAGTTTCGCAGGAAATGGGGACCAAGATCGGCCAGGAGGTGGGTTACTCC
ATCCGCTTTGAGAACTGCACTTCGGAGAAGACAGTGATCAAGTACATGAC
AGACGGCATGCTGCTTCGCGAGTTTTTGACGGAGCCGGACATGGCCTCGT
ACTCGGTGGTCATCATCGACGAGGCCCACGAGCGGACGCTCCACACCGAC
GTCCTCCTAGGCCTCTGCAAAGACATTGCTCGCTTCCGAGAGGACCTGCG
CCTGATcatctcctcggccacgcTCAACGCGGAGCGATTCTCGAACTATT
TTGACGGGGCTGCCATCTTCACGGTCCCAGGCCGCATCTTCAGCGTTGAT
GTGTACTACACCAAGGCGCCCGAGGCCGACTATCTGGATGCAGCTGTGGT
TTCTGTACTGCACATCCACATCTCTCAGCCCGTCCCTGGGGACATACTGG
TTTTCCTGacagggcaggaggagatcgagacGGCGGCAGAAGAACTCACC
AAGCGCACTAAAGGTCTGGGCTCGCGCATCAAGGAGCTAATAATTTGTCC
CATCTATGCGACGCTGCCTTCAGAGCAGCAGGCAAAAATTTTCGAGAAGG
CCCCTCCGAACGCCCGTAAGGTTGTCCTGGCCACAAACATCGCCGAGACC
TCTTTGACAATCGACGGAATCTGTTTCGTGGTGGACACTGGTTTTTGCAA
ACAAAAATCTTACAACCCGCGGTCGGGGATGGAATCTCTCATCGTCACGC
CCGTGTCAAGAGCGGCAGCCGAGCAACGCAAGGGcagggcgggcaggacg
cAGAACGGCAAGTGCTTCCGGCTTTTCACCATGTGGGCCTTCCAGAACGA
GCTTGACGAGGACACGGTGCCAGAAATCCAGCGCACCAATATGGGGAACG
TGGTGCTTATGCTCATGTCGCTGGGCATCAACAACATTCTGCAGTTCGAT
TTCATGGACAAGCCCCCAACAGAAGCCATCATGCAGGCACTTCAGCAGCT
TTACGCATTGGCTGCGATCAACGAGCGAGGCGAGCTGACCAAGTTGGGAC
GTCGTATGGCCGAGTTCCCTCTGGAGCCCATGCATTCAAAGGCCTTGCTG
GCGAGTGAGAAATACAAATGCGTCGACGACGTGATCACGATCCTGGCGAT
GCTAACGGTGGGAAACTCAATCTTTTACCGACCAAAGGACCGTGCCGTTC
ACGCTGACAATGCTCGCTTCAACTTTgcccgcgggggaggaggggatcaT
CTGGCCTTACTGCGGTGTTACCAGCAATGGGAAGAGAGCAACTTCTCCAC
GCAGTGGTGCTACGAGAATTTTGTCCAAATTCGCTCCATGAAGAAGGCGC
GCGACATCCGAGAGCAGCTGACGGGCCTGTGCGAGCGTGTCGAGATTGAA
TCGGTGTCCTCTGTAGATATCGACGATATACGGAAGGCCATCACGGCGGG
TTTCTTCTTCAATTGCGCCTCGCTCACGCGCTCTCAGGACTATCAAACCT
TAAAGCACGCCCACACTGTGTACATCCACCCATCCTCAGTGCTGGCCAAG
GACCAAAGAGAAGGCGTCCTACATTCTCATCTGGTCTATCACGAGCTGGC
CTTCACGTCAAAAGAGTACATGCGCTCTATCACTCCGATTCAGCCTCAAT
GGCTCTTGGAAGTGGCGCAGCATTATTACGACGCCGCCTCAATTCAAGAC
CTCTcccagaagaagaaggtgccCAAGGCGGTAGGGAAAGCTCCGGAGAC
CAACCGATAA
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Synonyms
Publications