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Properties
| Property Name | Value |
| Product | pre-mrna-splicing factor atp-dependent rna helicase dhx16 |
| Orig transcript id | gnl|cribi|Naga_100016g43.2913.mrna |
| Orig protein id | gnl|cribi|Naga_100016g43.2913 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| CM002466.1 | supercontig | CM002466.1:297604..301431 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5565 ID=rna5565|Name=rna5565|organism=Nannochloropsis gaditana|type=mRNA|length=1719bp GATGCCCAAAGCCATGGCCACGGCCTCGACCTCGCCAGCCCTCGCTCCCG TTCGGGTACACTCCTGTTTCCTGCCCGGCCGCGGGCCATTGTTTACTATG AACACGCTGGGCATGGTTCTACGAATTGGATGACGGATCACGTTCACGTA GTAAAAGTCGTTAAATGTCATTCCTCGCGTTTCTTCTTTTTTAAGATTTA ACTTTGATTACACTTATCAGGTACTTGGTGAGAGCGACATATTTTTCCTC AAGCAGCATTGGAAGGCCATAATCCCCATACATGAAAAGCAATGAGCTCA TCGCCTGTAGTCATTCCGTTCTTTCTGAAGGGAACGAGGCCATACCCTGC GAAACGCGTAGTCCCGTGGACATAATAACTCCCAACGCGTCAAGGACCTC CCAGCTCAACACCCCCGAGCAACGCCTGCGAGACGAACACAACAGCGACG AAGGAACGACTATGATTGATTTGACTGGCAACAGTCCAGGTGTCGTGGAT ATCTCGGTGCATTCTCCTCCATCAGCCATCGAAGCGACAGAGGATGTGAG AACGGCAGGCGGATGGAGTTGTGATTCAGGAGAAGTCTCCGACCGCACTG ACGTGCATGGGGAGGGGGTAGTGCGGGAAGGACACGCTCAAGAGGGTAGA TGCCACACCAACACGCATGGGCCTATGGGTAGTACGGGACATGGAGTGGA CCCTGCCGAAAGAGGGGGAGAGAAAGGAGACCCTGGCGAGGACGACAGCG TCCAGGTCCAGTGCCCCGTGTGCACATTTAACAACCCCCCGAGCATGGAC CTGTGCCAGATGTGTGTGCATCCCTTGACAATAGGCCTAGCAGGGCGTGT GCTGCATGTCCAGCACGGCCGAGTAGGTGGTGGTGGGAGGGGGAGAGAGA GCGGTTGCGGGGGGGCGGGGGATGAGGACCTGCCTGCCTTGTGGACCTGT CCCCTCTGCACGTTCTGCGGCAACCGGCGTGGCAACTGGGTGTGCCAGGC GTGTGAGATGGGGCGTCCTCGGCGCCAGGACATGCTAGACGCCGAGAGCG AGGAGGGCTACTTGATGGTGTCGGAGGGTACGGTCCGAGGGAGAGCGGGC AGGCCGGGCCCCCGGGGCCGCAGTCCAGCCCGGGCGGGAGGGAGGGTCGC CGATACCTCCATGCAGACGTTGGAGGATGTGGTGAGAGGGGCGCTCCTGG GGTCTGGGGTGGCGGGAGTAGGGTCAGCTGTGGCCGGCGGCTCTCGCTCG GAGCACAGACGCCGCGCTTTCATCGGGGGCGTGGTGGGAGGGCTGGGGGC GGGGCTGTTGGGGGGGGTACATGCGGCGGATGAGGGAGGAGGGGGACGCC ATAGACTCCATGTCGTACGACGACTTGCTTTCCCTGTTTGGGCCTGGGCA CGAGCCGATCAAAGCGACTGCTGCGACCGTCTGCGCCCTCCCAGAGATCA CCGTCCAGGCCGCAGACGTGGCGCGGATGCGGCGCGAAAGCATCAATGAC ACCCACGGCTGCAGCATCTGCATGGAAGACTTTGCTGAGGGGGACGTGAC TCGGCGCCTGCCTTGCCTGCACATGTATCACAAGGAATGCATCGACCGCT GGCTCCTCCAGTGCAACGCCACCTGTCCCATTTGCAAGGCTCCCTGCGGC TAGCAGGAGCGATCTTGATTGAGAGCACAGCCCGTGAAAGCCAAAGCAAA TTGTAAAATGTATACGAAG back to topprotein sequence of rna5565 >rna5565-protein ID=rna5565-protein|Name=rna5565|organism=Nannochloropsis gaditana|type=polypeptide|length=1119bp MDVEEWLCTELHDVVGYSDKTLSQFILSLAKRAPSAAALHVQLIGSGIEE GPRTRPFAEALFQRMRSQGGKVGKGVARNAGGVGGRAAASVGERRLTNAE LIRQSQRYSLVESDDEDYKRAISGTGDGNGTNGGKRRKEEKKEKREKKER QARKKTAEIEEDEEEDISLVRKRVREVTSGAVMDAKEKGEDERKQEELDE DIRERDAFVQRMLEKEDMKTQQKASGGGLSAEQIKELATTGAVSKEGEEY LDEARKVSRREYLKKREEKELALIEKELREEEFLFGDVEITAEEKQRREV KRKVLEMAKEKDRFEREHRGYRMPEAYETADGKLDTSKRDAALTARYQEE EQYKTEQELWEEQQVSVASFRPGAKDKGAAQKDLTAEEAELEEFMFENQI DFVSDQLLNNKLAKSKKQRTKKKEKGGEQERLSSTEESSEDEGQDEEQWL AQARAPMTEFEKLQAGRKRLPVFRYREEILAAIKDHQVLVLSAETGSGKT TQIPQYLHEVGYTQAGMIACTQPRRVAAMSVAARVSQEMGTKIGQEVGYS IRFENCTSEKTVIKYMTDGMLLREFLTEPDMASYSVVIIDEAHERTLHTD VLLGLCKDIARFREDLRLIISSATLNAERFSNYFDGAAIFTVPGRIFSVD VYYTKAPEADYLDAAVVSVLHIHISQPVPGDILVFLTGQEEIETAAEELT KRTKGLGSRIKELIICPIYATLPSEQQAKIFEKAPPNARKVVLATNIAET SLTIDGICFVVDTGFCKQKSYNPRSGMESLIVTPVSRAAAEQRKGRAGRT QNGKCFRLFTMWAFQNELDEDTVPEIQRTNMGNVVLMLMSLGINNILQFD FMDKPPTEAIMQALQQLYALAAINERGELTKLGRRMAEFPLEPMHSKALL ASEKYKCVDDVITILAMLTVGNSIFYRPKDRAVHADNARFNFARGGGGDH LALLRCYQQWEESNFSTQWCYENFVQIRSMKKARDIREQLTGLCERVEIE SVSSVDIDDIRKAITAGFFFNCASLTRSQDYQTLKHAHTVYIHPSSVLAK DQREGVLHSHLVYHELAFTSKEYMRSITPIQPQWLLEVAQHYYDAASIQD LSQKKKVPKAVGKAPETNR back to topmRNA from alignment at CM002466.1:297604..301431+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5565 ID=rna5565|Name=rna5565|organism=Nannochloropsis gaditana|type=mRNA|length=3828bp|location=Sequence derived from alignment at CM002466.1:297604..301431+ (Nannochloropsis gaditana) TGTCACGTACTAGCCATCTCATCCAACTTTCCCTTTATTTGCACCCACAA
AGCGCGAAGAATCACCCTGGGTATGGACGTCGAAGAGTGGCTTTGTACGG
AATTGCATGATGTGGTGGGTTACAGCGACAAAACGCTCAGCCAATTTATT
CTCTCCCTGGCTAAGCGGGCCCCTTCTGCGGCTGCTCTACACGTCCAGCT
GATAGGCAGCGGAATTGAGGAGGGTCCGAGGACCCGTCCTTTCGCCGAGG
CGCTTTTCCAACGTATGAGGTCTCAAGGTGGAAAGGTTGGCAAGGGGGTG
GCTCGAAATGCCGGGGGTGTGGGAGGTAGAGCTGCGGCATCTGTAGGAGA
GAGGCGGCTTACCAACGCCGAGCTCATCCGCCAGAGCCAGCGATACTCCC
TGGTTGAAAGTGACGACGAGGACTATAAGCGAGCGATCAGTGGCACTGGT
GATGGTAATGGGACTAAcggagggaagcgaaggaaggaggagaagaagga
gaaacgggaaaagaaggagaggcaggcgcGCAAGAAGACAGCTGAgatcg
aggaagacgaggaggaggacatctCACTGGTGCGAAAGCGCGTGCGCGAG
GTCACTTCTGGCGCGGTTATGGAcgcaaaagaaaagggcgAAGACGAAAG
AAAACAAGAAGAGTTGGATGAAGACATCCGGGAACGAGACGCGTTCGTCC
AGCGTATgctcgagaaagaggacatgAAGACGCAACAGAAAGCATCGGGG
GGAGGCCTGTCGGCAGAGCAGATCAAGGAACTTGCCACGACAGGAGCCGT
GtcaaaagagggggaggagtaTCTGGACGAGGCGCGTAAAGTGTCGCGGC
GAGAGTACttgaagaagcgggaggagaaggagctaGCGTTAATCGAGAAG
GAGCTTCGAGAAGAAGAGTTCCTCTTCGGGGATGTAGAGATCACGGCCGA
GGAAAAGCAACGCCGCGAAGTGAAGCGGAAGGTGTTGGAGATGGccaagg
aaaaagacaggTTCGAAAGGGAGCACCGGGGCTACCGCATGCCCGAAGCC
TACGAGACCGCCGACGGGAAGCTGGACACATCCAAGCGGGACGCAGCCTT
GACGGCCCGctaccaggaggaggagcagtaCAAGACGGAGCAGGAGCtct
gggaggagcagcaggtgAGCGTGGCCTCCTTTCGGCCGGGCGCCAAGGAT
AAGGGCGCGGCCCAGAAGGATttgacggcggaggaagctgaaTTGGAGGA
ATTTATGTTTGAAAATCAGATCGATTTTGTGTCGGATCAACTGTTGAACA
ACAAACTCGCGAAATCCAAGAAGCAGCGgacgaagaaaaaggagaagggt
ggcGAGCAGGAGAGGTTGAGTAGCACTGAGGAGTCAtcggaggacgaagg
ccaagacgaggagcagTGGCTGGCGCAGGCGCGCGCCCCTATGACCGAAT
TTGAAAAGCtccaggcgggaaggaagagactGCCGGTGTTTCGGTACCGG
GAAGAGATCCTGGCCGCCATCAAGGACCATCAAGTGCTGGTCTTGTCGGC
CGAGACAGGctcggggaagacgacgcaGATCCCGCAGTACTTGCACGAGG
TGGGCTACACCCAGGCGGGCATGATCGCATGCACTCAGCCTCGCCGCGTG
GCCGCCATGAGCGTGGCGGCCCGAGTTTCGCAGGAAATGGGGACCAAGAT
CGGCCAGGAGGTGGGTTACTCCATCCGCTTTGAGAACTGCACTTCGGAGA
AGACAGTGATCAAGTACATGACAGACGGCATGCTGCTTCGCGAGTTTTTG
ACGGAGCCGGACATGGCCTCGTACTCGGTGGTCATCATCGACGAGGCCCA
CGAGCGGACGCTCCACACCGACGTCCTCCTAGGCCTCTGCAAAGACATTG
CTCGCTTCCGAGAGGACCTGCGCCTGATcatctcctcggccacgcTCAAC
GCGGAGCGATTCTCGAACTATTTTGACGGGGCTGCCATCTTCACGGTCCC
AGGCCGCATCTTCAGCGTTGATGTGTACTACACCAAGGCGCCCGAGGCCG
ACTATCTGGATGCAGCTGTGGTTTCTGTACTGCACATCCACATCTCTCAG
CCCGTCCCTGGGGACATACTGGTTTTCCTGacagggcaggaggagatcga
gacGGCGGCAGAAGAACTCACCAAGCGCACTAAAGGTCTGGGCTCGCGCA
TCAAGGAGCTAATAATTTGTCCCATCTATGCGACGCTGCCTTCAGAGCAG
CAGGCAAAAATTTTCGAGAAGGCCCCTCCGAACGCCCGTAAGGTTGTCCT
GGCCACAAACATCGCCGAGACCTCTTTGACAATCGACGGAATCTGTTTCG
TGGTGGACACTGGTTTTTGCAAACAAAAATCTTACAACCCGCGGTCGGGG
ATGGAATCTCTCATCGTCACGCCCGTGTCAAGAGCGGCAGCCGAGCAACG
CAAGGGcagggcgggcaggacgcAGAACGGCAAGTGCTTCCGGCTTTTCA
CCATGTGGGCCTTCCAGAACGAGCTTGACGAGGACACGGTGCCAGAAATC
CAGCGCACCAATATGGGGAACGTGGTGCTTATGCTCATGTCGCTGGGCAT
CAACAACATTCTGCAGTTCGATTTCATGGACAAGCCCCCAACAGAAGCCA
TCATGCAGGCACTTCAGCAGCTTTACGCATTGGCTGCGATCAACGAGCGA
GGCGAGCTGACCAAGTTGGGACGTCGTATGGCCGAGTTCCCTCTGGAGCC
CATGCATTCAAAGGCCTTGCTGGCGAGTGAGAAATACAAATGCGTCGACG
ACGTGATCACGATCCTGGCGATGCTAACGGTGGGAAACTCAATCTTTTAC
CGACCAAAGGACCGTGCCGTTCACGCTGACAATGCTCGCTTCAACTTTgc
ccgcgggggaggaggggatcaTCTGGCCTTACTGCGGTGTTACCAGCAAT
GGGAAGAGAGCAACTTCTCCACGCAGTGGTGCTACGAGAATTTTGTCCAA
ATTCGCTCCATGAAGAAGGCGCGCGACATCCGAGAGCAGCTGACGGGCCT
GTGCGAGCGTGTCGAGATTGAATCGGTGTCCTCTGTAGATATCGACGATA
TACGGAAGGCCATCACGGCGGGTTTCTTCTTCAATTGCGCCTCGCTCACG
CGCTCTCAGGACTATCAAACCTTAAAGCACGCCCACACTGTGTACATCCA
CCCATCCTCAGTGCTGGCCAAGGACCAAAGAGAAGGCGTCCTACATTCTC
ATCTGGTCTATCACGAGCTGGCCTTCACGTCAAAAGAGTACATGCGCTCT
ATCACTCCGATTCAGCCTCAATGGCTCTTGGAAGTGGCGCAGCATTATTA
CGACGCCGCCTCAATTCAAGACCTCTcccagaagaagaaggtgccCAAGG
CGGTAGGGAAAGCTCCGGAGACCAACCGATAATCTACAGGTTCGAAAGTA
GGAAGAAGTCACACATGGGGGTGAAGGGAGCACATATTCTGTATAGATGC
ATTATGAGCTTTGTTTACCTTAGCAAAGAGCTTAGTTGATGGGCTTAAAA
CAAATGGCTTTTTAAGATGAATATATCGAAAGTACTTTTTTGACTTCAGG
TAAATACAAGACGGATTCTAATTGTCTGATGTTCCCCTTTTTCTAAATGT
ATACGcactccttttccctgcgACTTTGACACTGTCTGTTAAAGCAATGC
AAGCAAACTTGTTCGCAAGCCTGTGATCAATGTTAGTGGAAAACAACTGA
TTTCAAGCCTGCATAGAGTGACGTGACCGTGCCAGTATACACACaacaag
aggaggcgaaaaaaGCCAACTGCCTGTG back to topCoding sequence (CDS) from alignment at CM002466.1:297604..301431+ >rna5565 ID=rna5565|Name=rna5565|organism=Nannochloropsis gaditana|type=CDS|length=3360bp|location=Sequence derived from alignment at CM002466.1:297604..301431+ (Nannochloropsis gaditana) ATGGACGTCGAAGAGTGGCTTTGTACGGAATTGCATGATGTGGTGGGTTA CAGCGACAAAACGCTCAGCCAATTTATTCTCTCCCTGGCTAAGCGGGCCC CTTCTGCGGCTGCTCTACACGTCCAGCTGATAGGCAGCGGAATTGAGGAG GGTCCGAGGACCCGTCCTTTCGCCGAGGCGCTTTTCCAACGTATGAGGTC TCAAGGTGGAAAGGTTGGCAAGGGGGTGGCTCGAAATGCCGGGGGTGTGG GAGGTAGAGCTGCGGCATCTGTAGGAGAGAGGCGGCTTACCAACGCCGAG CTCATCCGCCAGAGCCAGCGATACTCCCTGGTTGAAAGTGACGACGAGGA CTATAAGCGAGCGATCAGTGGCACTGGTGATGGTAATGGGACTAAcggag ggaagcgaaggaaggaggagaagaaggagaaacgggaaaagaaggagagg caggcgcGCAAGAAGACAGCTGAgatcgaggaagacgaggaggaggacat ctCACTGGTGCGAAAGCGCGTGCGCGAGGTCACTTCTGGCGCGGTTATGG AcgcaaaagaaaagggcgAAGACGAAAGAAAACAAGAAGAGTTGGATGAA GACATCCGGGAACGAGACGCGTTCGTCCAGCGTATgctcgagaaagagga catgAAGACGCAACAGAAAGCATCGGGGGGAGGCCTGTCGGCAGAGCAGA TCAAGGAACTTGCCACGACAGGAGCCGTGtcaaaagagggggaggagtaT CTGGACGAGGCGCGTAAAGTGTCGCGGCGAGAGTACttgaagaagcggga ggagaaggagctaGCGTTAATCGAGAAGGAGCTTCGAGAAGAAGAGTTCC TCTTCGGGGATGTAGAGATCACGGCCGAGGAAAAGCAACGCCGCGAAGTG AAGCGGAAGGTGTTGGAGATGGccaaggaaaaagacaggTTCGAAAGGGA GCACCGGGGCTACCGCATGCCCGAAGCCTACGAGACCGCCGACGGGAAGC TGGACACATCCAAGCGGGACGCAGCCTTGACGGCCCGctaccaggaggag gagcagtaCAAGACGGAGCAGGAGCtctgggaggagcagcaggtgAGCGT GGCCTCCTTTCGGCCGGGCGCCAAGGATAAGGGCGCGGCCCAGAAGGATt tgacggcggaggaagctgaaTTGGAGGAATTTATGTTTGAAAATCAGATC GATTTTGTGTCGGATCAACTGTTGAACAACAAACTCGCGAAATCCAAGAA GCAGCGgacgaagaaaaaggagaagggtggcGAGCAGGAGAGGTTGAGTA GCACTGAGGAGTCAtcggaggacgaaggccaagacgaggagcagTGGCTG GCGCAGGCGCGCGCCCCTATGACCGAATTTGAAAAGCtccaggcgggaag gaagagactGCCGGTGTTTCGGTACCGGGAAGAGATCCTGGCCGCCATCA AGGACCATCAAGTGCTGGTCTTGTCGGCCGAGACAGGctcggggaagacg acgcaGATCCCGCAGTACTTGCACGAGGTGGGCTACACCCAGGCGGGCAT GATCGCATGCACTCAGCCTCGCCGCGTGGCCGCCATGAGCGTGGCGGCCC GAGTTTCGCAGGAAATGGGGACCAAGATCGGCCAGGAGGTGGGTTACTCC ATCCGCTTTGAGAACTGCACTTCGGAGAAGACAGTGATCAAGTACATGAC AGACGGCATGCTGCTTCGCGAGTTTTTGACGGAGCCGGACATGGCCTCGT ACTCGGTGGTCATCATCGACGAGGCCCACGAGCGGACGCTCCACACCGAC GTCCTCCTAGGCCTCTGCAAAGACATTGCTCGCTTCCGAGAGGACCTGCG CCTGATcatctcctcggccacgcTCAACGCGGAGCGATTCTCGAACTATT TTGACGGGGCTGCCATCTTCACGGTCCCAGGCCGCATCTTCAGCGTTGAT GTGTACTACACCAAGGCGCCCGAGGCCGACTATCTGGATGCAGCTGTGGT TTCTGTACTGCACATCCACATCTCTCAGCCCGTCCCTGGGGACATACTGG TTTTCCTGacagggcaggaggagatcgagacGGCGGCAGAAGAACTCACC AAGCGCACTAAAGGTCTGGGCTCGCGCATCAAGGAGCTAATAATTTGTCC CATCTATGCGACGCTGCCTTCAGAGCAGCAGGCAAAAATTTTCGAGAAGG CCCCTCCGAACGCCCGTAAGGTTGTCCTGGCCACAAACATCGCCGAGACC TCTTTGACAATCGACGGAATCTGTTTCGTGGTGGACACTGGTTTTTGCAA ACAAAAATCTTACAACCCGCGGTCGGGGATGGAATCTCTCATCGTCACGC CCGTGTCAAGAGCGGCAGCCGAGCAACGCAAGGGcagggcgggcaggacg cAGAACGGCAAGTGCTTCCGGCTTTTCACCATGTGGGCCTTCCAGAACGA GCTTGACGAGGACACGGTGCCAGAAATCCAGCGCACCAATATGGGGAACG TGGTGCTTATGCTCATGTCGCTGGGCATCAACAACATTCTGCAGTTCGAT TTCATGGACAAGCCCCCAACAGAAGCCATCATGCAGGCACTTCAGCAGCT TTACGCATTGGCTGCGATCAACGAGCGAGGCGAGCTGACCAAGTTGGGAC GTCGTATGGCCGAGTTCCCTCTGGAGCCCATGCATTCAAAGGCCTTGCTG GCGAGTGAGAAATACAAATGCGTCGACGACGTGATCACGATCCTGGCGAT GCTAACGGTGGGAAACTCAATCTTTTACCGACCAAAGGACCGTGCCGTTC ACGCTGACAATGCTCGCTTCAACTTTgcccgcgggggaggaggggatcaT CTGGCCTTACTGCGGTGTTACCAGCAATGGGAAGAGAGCAACTTCTCCAC GCAGTGGTGCTACGAGAATTTTGTCCAAATTCGCTCCATGAAGAAGGCGC GCGACATCCGAGAGCAGCTGACGGGCCTGTGCGAGCGTGTCGAGATTGAA TCGGTGTCCTCTGTAGATATCGACGATATACGGAAGGCCATCACGGCGGG TTTCTTCTTCAATTGCGCCTCGCTCACGCGCTCTCAGGACTATCAAACCT TAAAGCACGCCCACACTGTGTACATCCACCCATCCTCAGTGCTGGCCAAG GACCAAAGAGAAGGCGTCCTACATTCTCATCTGGTCTATCACGAGCTGGC CTTCACGTCAAAAGAGTACATGCGCTCTATCACTCCGATTCAGCCTCAAT GGCTCTTGGAAGTGGCGCAGCATTATTACGACGCCGCCTCAATTCAAGAC CTCTcccagaagaagaaggtgccCAAGGCGGTAGGGAAAGCTCCGGAGAC CAACCGATAA back to top
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