rna5563, rna5563 (mRNA) Nannochloropsis gaditana

Overview
Namerna5563
Unique Namerna5563
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1299
Alignment locationCM002466.1:293791..295820 +

Link to JBrowse

Properties
Property NameValue
Productphd zinc finger-containing protein
Orig transcript idgnl|cribi|Naga_100016g45.2939.mrna
Orig protein idgnl|cribi|Naga_100016g45.2939
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:293791..295820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100016g45gene5376Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5563rna5563-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25130.1cds5549Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5563 ID=rna5563|Name=rna5563|organism=Nannochloropsis gaditana|type=mRNA|length=1299bp
CCTTGTGACGGCGGCGGATGGCTGAGAGACGGCGACACCCGGGCCAGCAT
TGCAGAAGGAGAGAGAAGGCGACGCGTCATATTCGCATGGCCACGAACTG
CGTACAAATGAACCATGCTATGAAATGAATGTGTTATGAAGTAGTATACC
ACAGCGGTCTGTTAATGCTCATTTTTGGTCCCCCAGCGTAGTGTTGCACC
GTGCGCGTTCCCACCTCCCCGCTTCGACTGATGCCTCCTTCCTGTTTATA
TCCAACCAACCATCAATTCTTCTGCTAACCAAAGCTATTTGCTCCGCTCC
CTCTTGACAAACAGTTATGGGTATTTCTCGTGACTCTCGCCACAAGCGCC
GCCACACGGGTGGAAAGCGGCCCTCATACCGTAAGAAGCGAAAGTTTGAG
ATGGGTCGCCCGGCGGCAATGACGAAATTGGTGCTGGGACATGGGGAGAA
GCGCGTACATGTTGTGAGAGGACGGGGCGGGAATCTTAAGTTCCGTGCGC
TCCGCCTGGAAACGGGCAACTTTGCCTGGCGCTCTGAGACGGTGGCGAGG
AAGACACGTATTTTGGACGTGGTCTACAACGCCTCGAACAACGAATTGGT
CCGCACCAAGACCCTGGTGAAAAGTGCCATCGTGCAAATCGATGCCGCGC
CTTTCCGACAATACTTTGAGCAGCACTACGGTCAGGAGGTGGGCAGTAAG
AAAAAGAAGGCGGCGGCCGCAACAGCAAAATCGGAGGCGGAGCCCGAGAA
GAAGTCCAGCCATGTGCTTCGCAAGCTTGCCAAGCGCAAAGGAGAGTTAG
AGTCGCACTTGGAGGAGCAATTTGCGTCGGGCCGCTTGCTCGCTTCTATT
TCTTCTCGTCCGGGTCAGAGTGGGCGCGCGGATGGTTACATTCTGGAAGG
AAAAGAGTTGGAGTTCTATCAGAAGCAGTTGGCCAAGAAGAAGAAGGGTC
AAAAGTAAGGGGCGATGGGAGTAGACGGGGCGAATGGCGTAAAAGCAGGG
CTTAGGTGTAGTGTTGCAGGCGGTTCTGCATCTTTGATAGACGCGATAGT
CCGAGAGGGCTGGGCCACGAGGGGATAGACTTCCTGGAGCTGAGGATGGA
CACGCGCAGTTTTGGGATAAGGAGGGGCGTCATGGCATCCTTGACGATTA
TGACACAAACGACAGAAGAACCAAATAAGCTCTGCCAATTAATTACGGCC
TCTAGCAAGGGTATCGTCTGAAGTGCTTCATGCTTTTCCAGAGCATGTTT
TCTAACGATGACTCCCAAGACATGGTACCTCTTAAAATGTGACAATTCG
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protein sequence of rna5563

>rna5563-protein ID=rna5563-protein|Name=rna5563|organism=Nannochloropsis gaditana|type=polypeptide|length=437bp
MLTINQSTDQEAGSGPLTDDKGDLQSQNFGASNQCVENSTQPTRSGAMGP
MGDRAKKEDCCVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPRVPEGDF
FCDFCAIARDISNTDKRIAPMCELCHQKGGGLLRIWIVDRGEGQYSDEDY
VRDGSEDEDNDCGSTFEVAACIRPSDKANAFASISTSLPNPLAEPLFVHK
VCALAGWNQQPRLVRFVAGTNAQVAVVSRDIVATYRNLKAQEETMASRWQ
AADALSCGICDSSVGLLVRCCHHDPDSAVFRCSFSAHAACAFNAAQASLL
LHDVQRSPLVTVWCSAHRPEPSVERPGGDAVAKCLGFLLPPLASPLDQHE
QDGRQYQPCHTPLLRHLVHERRKEGYGRLGGYLDDKLRLLERRMSLAGAL
PVPTHSTDGRLILCAAGRAEEMFACRQRLPATPEVRR
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mRNA from alignment at CM002466.1:293791..295820+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5563 ID=rna5563|Name=rna5563|organism=Nannochloropsis gaditana|type=mRNA|length=2030bp|location=Sequence derived from alignment at CM002466.1:293791..295820+ (Nannochloropsis gaditana)
TCATGATTTTACAGGGCTTGGCACCGCTGTGAAGATCCTATGACCAGATG
CATTGAACCAAGAGATGGTGGTCGGTACAAGCTCAAATTTCTTCACTCAA
ATTTTCACATGAAAGCTAGGGTGAAGACAGCTGTACTAATTTGTTGATGA
CGAAGACTGGCATGTAAGTGGCGTAGACAGGATTTAGATATGCCCATTTT
TGTCCCTTCTATCTTATTTTCCCTCAGTGATGGAGCATTGGAGAAAAAGG
CCTTATGCCTCATGGAACCTAAAAAACATACATACGAATGATACGAACga
ttttaacctccccatATCCTCACTGCAACCTTTTCACACTCTTTTGAACC
CCTTAAAGAATCGAAGCGAAGTGAAACGGTTTGAGTGATACCAATAGAGT
AGATGTTAACCATTAACCAAAGCACTGACCAAGAAGCTGGATCTGGGCCT
CTTACCGACGATAAAGGCGACCTACAAAGCCAGAATTTCGGCGCGTCGAA
TCAATGTGTCGAGAACTCGACGCAACCGACAAGAAGCGGAGCAATGGGGC
CGATGGGAGATCGTGCAAAAAAAGAGGATTGTTGTGTCATCTGCTTCCAA
GGAGAGTTCCAGTCTACCAACGAAATTGTGTACTGTGATGCGTGCGACTT
GGGTTTCCATCAGCAATGCTACGGATTGCCTAGGGTGCCCGAAGGTGATT
TCTTCTGCGACTTCTGCGCCATTGCCCGGGATATATCAAACACGGACAAA
AGAATCGCTCCAATGTGTGAGCTTTGTCATCAAAAAGGCGGCGGTCTTTT
GAGGATATGGATAGTTGACCGTGGGGAAGGACAGTACTCCGATGAGGACT
ACGTAAgggacgggagcgaggacgaagacaaCGATTGTGGCAGCACCTTT
GAAGTAGCGGCCTGCATAAGGCCTAGTGATAAAGCAAATGCCTTCGCATC
AATTTCTACCTCCTTGCCAAATCCTTTGGCAGAGCCGCTCTTCGTGCACA
AGGTTTGCGCGCTAGCAGGTTGGAATCAACAGCCACGCCTGGTGCGTTTC
GTGGCAGGCACTAATGCTCAGGTGGCAGTAGTGTCGCGTGATATAGTGGC
GACATATCGCAACTTgaaggcccaggaggaaaCTATGGCTTCACGCTGGC
AAGCTGCCGACGCGCTATCTTGCGGTATATGCGATTCCTCCGTGGGACTG
CTTGTCCGGTGCTGCCACCACGACCCTGACTCTGCGGTGTTCAGATGCTC
TTTTTCCGCCCATGCGGCTTGTGCGTTCAACGCGGCCCAAGCATCGCTCC
TACTGCACGATGTACAGCGGTCGCCGCTGGTCACTGTGTGGTGCTCAGCA
CACAGACCTGAACCGTCAGTGGAGCGACCGGGCGGGGACGCCGTGGCCAA
GTGTTTGGGTTTCCTGCTGCCTCCCTTAGCCTCACCCCTCGACCAGCATG
AGCAGGACGGGCGTCAGTATCAGCCTTGCCACACGCCGCTCCTACGGCAC
CTTGTTCACGAGCGGCGCAAGGAGGGCTACGGGCGACTGGGGGGCTATCT
AGACGACAAACTGAGACTCCTGGAGAGACGCATGTCGCTGGCAGGGGCGT
TACCCGTCCCGACCCACTCGACGGATGGCCGGTTGATCCTGTGCGCGGCC
GGGCGCGCGGAGGAGATGTTTGCCTGCAGGCAGCGGCTGCCCGCCACACC
TGAGGTGCGAAGGTAGAGCTGAAGAAGAGCGTCAGAGGAAGCCTaggaaa
gaaaagacttGCGTTTGCATTCGACTTCGTATACATTTTACAATTTGCTT
TGGCTTTCACGGGCTGTGCTCTCAATCAAGATCGCTCCTGCTAGCCGCAG
GGAGCCTTGCAAATGGGACAGGTGGCGTTGCACTGGAGGAGCCAGCGGTC
GATGCATTCCTTGTGATACATGTGCAGGCAAGGCAGGCGCCGAGTCACGT
CCCCCTCAGCAAAGTCTTCCATGCAGATGCTGCAGCCGTGGGTGTCATTG
ATGCTTTCGCGCCGCATCCGCGCCACGTCT
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Coding sequence (CDS) from alignment at CM002466.1:293791..295820+

>rna5563 ID=rna5563|Name=rna5563|organism=Nannochloropsis gaditana|type=CDS|length=1314bp|location=Sequence derived from alignment at CM002466.1:293791..295820+ (Nannochloropsis gaditana)
ATGTTAACCATTAACCAAAGCACTGACCAAGAAGCTGGATCTGGGCCTCT
TACCGACGATAAAGGCGACCTACAAAGCCAGAATTTCGGCGCGTCGAATC
AATGTGTCGAGAACTCGACGCAACCGACAAGAAGCGGAGCAATGGGGCCG
ATGGGAGATCGTGCAAAAAAAGAGGATTGTTGTGTCATCTGCTTCCAAGG
AGAGTTCCAGTCTACCAACGAAATTGTGTACTGTGATGCGTGCGACTTGG
GTTTCCATCAGCAATGCTACGGATTGCCTAGGGTGCCCGAAGGTGATTTC
TTCTGCGACTTCTGCGCCATTGCCCGGGATATATCAAACACGGACAAAAG
AATCGCTCCAATGTGTGAGCTTTGTCATCAAAAAGGCGGCGGTCTTTTGA
GGATATGGATAGTTGACCGTGGGGAAGGACAGTACTCCGATGAGGACTAC
GTAAgggacgggagcgaggacgaagacaaCGATTGTGGCAGCACCTTTGA
AGTAGCGGCCTGCATAAGGCCTAGTGATAAAGCAAATGCCTTCGCATCAA
TTTCTACCTCCTTGCCAAATCCTTTGGCAGAGCCGCTCTTCGTGCACAAG
GTTTGCGCGCTAGCAGGTTGGAATCAACAGCCACGCCTGGTGCGTTTCGT
GGCAGGCACTAATGCTCAGGTGGCAGTAGTGTCGCGTGATATAGTGGCGA
CATATCGCAACTTgaaggcccaggaggaaaCTATGGCTTCACGCTGGCAA
GCTGCCGACGCGCTATCTTGCGGTATATGCGATTCCTCCGTGGGACTGCT
TGTCCGGTGCTGCCACCACGACCCTGACTCTGCGGTGTTCAGATGCTCTT
TTTCCGCCCATGCGGCTTGTGCGTTCAACGCGGCCCAAGCATCGCTCCTA
CTGCACGATGTACAGCGGTCGCCGCTGGTCACTGTGTGGTGCTCAGCACA
CAGACCTGAACCGTCAGTGGAGCGACCGGGCGGGGACGCCGTGGCCAAGT
GTTTGGGTTTCCTGCTGCCTCCCTTAGCCTCACCCCTCGACCAGCATGAG
CAGGACGGGCGTCAGTATCAGCCTTGCCACACGCCGCTCCTACGGCACCT
TGTTCACGAGCGGCGCAAGGAGGGCTACGGGCGACTGGGGGGCTATCTAG
ACGACAAACTGAGACTCCTGGAGAGACGCATGTCGCTGGCAGGGGCGTTA
CCCGTCCCGACCCACTCGACGGATGGCCGGTTGATCCTGTGCGCGGCCGG
GCGCGCGGAGGAGATGTTTGCCTGCAGGCAGCGGCTGCCCGCCACACCTG
AGGTGCGAAGGTAG
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Synonyms
Publications