EWM25130.1, cds5549 (CDS) Nannochloropsis gaditana

Overview
NameEWM25130.1
Unique Namecds5549
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:294193..295506 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25130.1
Productphd zinc finger-containing protein
Orig transcript idgnl|cribi|Naga_100016g45.2939.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:294193..295506 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR019787Znf_PHD-finger
IPR019786Zinc_finger_PHD-type_CS
IPR013083Znf_RING/FYVE/PHD
IPR001965Znf_PHD
Homology
BLAST of EWM25130.1 vs. NCBI_GenBank
Match: gi|553196203|ref|XP_005856290.1| (phd zinc finger-containing protein [Nannochloropsis gaditana CCMP526] >gi|422292768|gb|EKU20070.1| phd zinc finger-containing protein [Nannochloropsis gaditana CCMP526] >gi|585106768|gb|EWM25130.1| phd zinc finger-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 904.434 bits (2336), Expect = 0.000e+0
Identity = 437/437 (100.00%), Postives = 437/437 (100.00%), Query Frame = 0
Query:    1 MLTINQSTDQEAGSGPLTDDKGDLQSQNFGASNQCVENSTQPTRSGAMGPMGDRAKKEDCCVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRIAPMCELCHQKGGGLLRIWIVDRGEGQYSDEDYVRDGSEDEDNDCGSTFEVAACIRPSDKANAFASISTSLPNPLAEPLFVHKVCALAGWNQQPRLVRFVAGTNAQVAVVSRDIVATYRNLKAQEETMASRWQAADALSCGICDSSVGLLVRCCHHDPDSAVFRCSFSAHAACAFNAAQASLLLHDVQRSPLVTVWCSAHRPEPSVERPGGDAVAKCLGFLLPPLASPLDQHEQDGRQYQPCHTPLLRHLVHERRKEGYGRLGGYLDDKLRLLERRMSLAGALPVPTHSTDGRLILCAAGRAEEMFACRQRLPATPEVRR 437
            MLTINQSTDQEAGSGPLTDDKGDLQSQNFGASNQCVENSTQPTRSGAMGPMGDRAKKEDCCVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRIAPMCELCHQKGGGLLRIWIVDRGEGQYSDEDYVRDGSEDEDNDCGSTFEVAACIRPSDKANAFASISTSLPNPLAEPLFVHKVCALAGWNQQPRLVRFVAGTNAQVAVVSRDIVATYRNLKAQEETMASRWQAADALSCGICDSSVGLLVRCCHHDPDSAVFRCSFSAHAACAFNAAQASLLLHDVQRSPLVTVWCSAHRPEPSVERPGGDAVAKCLGFLLPPLASPLDQHEQDGRQYQPCHTPLLRHLVHERRKEGYGRLGGYLDDKLRLLERRMSLAGALPVPTHSTDGRLILCAAGRAEEMFACRQRLPATPEVRR
Sbjct:    1 MLTINQSTDQEAGSGPLTDDKGDLQSQNFGASNQCVENSTQPTRSGAMGPMGDRAKKEDCCVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRIAPMCELCHQKGGGLLRIWIVDRGEGQYSDEDYVRDGSEDEDNDCGSTFEVAACIRPSDKANAFASISTSLPNPLAEPLFVHKVCALAGWNQQPRLVRFVAGTNAQVAVVSRDIVATYRNLKAQEETMASRWQAADALSCGICDSSVGLLVRCCHHDPDSAVFRCSFSAHAACAFNAAQASLLLHDVQRSPLVTVWCSAHRPEPSVERPGGDAVAKCLGFLLPPLASPLDQHEQDGRQYQPCHTPLLRHLVHERRKEGYGRLGGYLDDKLRLLERRMSLAGALPVPTHSTDGRLILCAAGRAEEMFACRQRLPATPEVRR 437          
BLAST of EWM25130.1 vs. NCBI_GenBank
Match: gi|553196316|ref|XP_005856317.1| (kinesin-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422292738|gb|EKU20040.1| kinesin-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 82.4185 bits (202), Expect = 3.227e-13
Identity = 39/81 (48.15%), Postives = 49/81 (60.49%), Query Frame = 0
Query:   61 CVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRIAPMCELCHQKGGGLLRI----WI 137
            C++CF G    +NEIV+CD CD+  HQ CYGLP VPEGDFFCD C     + + D+ IA  C LC +  GG  R     W+
Sbjct:  418 CMVCFDGSSTESNEIVFCDGCDMAAHQACYGLPEVPEGDFFCDKCLGL--MEDPDRPIA--CTLCPEVHGGFKRTLDGEWV 494          
BLAST of EWM25130.1 vs. NCBI_GenBank
Match: gi|585105645|gb|EWM24254.1| (bromodomain containing 1 [Nannochloropsis gaditana])

HSP 1 Score: 82.4185 bits (202), Expect = 6.333e-13
Identity = 39/81 (48.15%), Postives = 49/81 (60.49%), Query Frame = 0
Query:   61 CVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRIAPMCELCHQKGGGLLRI----WI 137
            C++CF G    +NEIV+CD CD+  HQ CYGLP VPEGDFFCD C     + + D+ IA  C LC +  GG  R     W+
Sbjct:  716 CMVCFDGSSTESNEIVFCDGCDMAAHQACYGLPEVPEGDFFCDKCLGL--MEDPDRPIA--CTLCPEVHGGFKRTLDGEWV 792          

HSP 2 Score: 62.7734 bits (151), Expect = 8.420e-7
Identity = 30/97 (30.93%), Postives = 46/97 (47.42%), Query Frame = 0
Query:   36 VENSTQPTRSGAMGPMGDRAKKEDCCVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRIAPMCELCHQKGGGL 132
            V +   P +  +   + + ++++  C +C +G  +  N+IV CD CDL  HQ CYG+  +P G +FC  C    D           C LC   GG L
Sbjct:    7 VIDPVSPVQELSENSVKESSEEDILCTVCGEGHSEVENQIVLCDHCDLSVHQGCYGVEAIPVGKWFCRLCEYGMDCHKV------RCSLCGHGGGAL 97          
BLAST of EWM25130.1 vs. NCBI_GenBank
Match: gi|1160559899|ref|XP_020432501.1| (PHD zinc finger-containing protein [Polysphondylium pallidum PN500] >gi|281206192|gb|EFA80381.1| PHD zinc finger-containing protein [Polysphondylium pallidum PN500])

HSP 1 Score: 78.5666 bits (192), Expect = 9.752e-12
Identity = 34/85 (40.00%), Postives = 45/85 (52.94%), Query Frame = 0
Query:   48 MGPMGDRAKKEDCCVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRIAPMCELCHQKGGGL 132
            M P     + ED C +CF G    TN+IVYCD CD+  HQ+CYG+  +PEG +FC  C        +  +    C LC+ K G L
Sbjct:  353 MFPHFSSIEAEDVCSVCFDGTSDDTNQIVYCDGCDIAVHQECYGIRLIPEGHWFCQKC-------ESPAKATISCRLCNMKNGAL 430          
BLAST of EWM25130.1 vs. NCBI_GenBank
Match: gi|551548365|ref|XP_005761825.1| (hypothetical protein EMIHUDRAFT_57793, partial [Emiliania huxleyi CCMP1516] >gi|485610703|gb|EOD09396.1| hypothetical protein EMIHUDRAFT_57793, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 72.0182 bits (175), Expect = 1.321e-11
Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = 0
Query:   60 CCVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPR--VPEGD--FFCDFCAIARDISNTDKRIAPMCELCHQKGGGLLR 134
            CC +C +G+++  N+I++CD+CDL  HQ CYG     +PEGD  +FCD C  ++    + +R+   C LC +KGG + R
Sbjct:    6 CCNVCGEGDWEEDNKIIFCDSCDLAVHQVCYGAGARVIPEGDAPWFCDMCKFSKRAGGSSRRVEQECILCPEKGGAMKR 84          
BLAST of EWM25130.1 vs. NCBI_GenBank
Match: gi|330805108|ref|XP_003290529.1| (hypothetical protein DICPUDRAFT_81259 [Dictyostelium purpureum] >gi|325079359|gb|EGC32963.1| hypothetical protein DICPUDRAFT_81259 [Dictyostelium purpureum])

HSP 1 Score: 77.411 bits (189), Expect = 2.061e-11
Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 0
Query:   56 KKEDCCVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRIAPMCELCHQKGGGL 132
            + +D C +CF G    TN+IVYCD CD+  HQ CYG+  +PEG +FC  C      S    +I+  CE+C +K G  
Sbjct:  447 ESDDVCAVCFDGTSDDTNQIVYCDGCDIAVHQDCYGILLIPEGQWFCQKCE-----SPEKSQIS--CEICDKKSGAF 516          
BLAST of EWM25130.1 vs. NCBI_GenBank
Match: gi|908426638|ref|XP_013074315.1| (PREDICTED: uncharacterized protein LOC106060844 isoform X2 [Biomphalaria glabrata])

HSP 1 Score: 76.2554 bits (186), Expect = 4.280e-11
Identity = 37/102 (36.27%), Postives = 54/102 (52.94%), Query Frame = 0
Query:   33 NQCV--ENSTQPTRSGAMGPMGDRAKKEDCCVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRIAPMCELCHQKGGGL 132
            NQC    N+ + T  G    +G    ++  C +C   E + TNE+V+CD CD+  HQ CYG+  +PEG + C  CA+          I PMC LC ++GG +
Sbjct:  216 NQCYIKTNALKKTEEG----LGIEYDEDVACDVCHMLESEDTNEMVFCDGCDICVHQACYGIQTIPEGSWLCRICALG---------IKPMCLLCPKRGGAM 304          
BLAST of EWM25130.1 vs. NCBI_GenBank
Match: gi|908426634|ref|XP_013074313.1| (PREDICTED: uncharacterized protein LOC106060844 isoform X1 [Biomphalaria glabrata] >gi|908426636|ref|XP_013074314.1| PREDICTED: uncharacterized protein LOC106060844 isoform X1 [Biomphalaria glabrata])

HSP 1 Score: 76.2554 bits (186), Expect = 4.283e-11
Identity = 37/102 (36.27%), Postives = 54/102 (52.94%), Query Frame = 0
Query:   33 NQCV--ENSTQPTRSGAMGPMGDRAKKEDCCVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRIAPMCELCHQKGGGL 132
            NQC    N+ + T  G    +G    ++  C +C   E + TNE+V+CD CD+  HQ CYG+  +PEG + C  CA+          I PMC LC ++GG +
Sbjct:  222 NQCYIKTNALKKTEEG----LGIEYDEDVACDVCHMLESEDTNEMVFCDGCDICVHQACYGIQTIPEGSWLCRICALG---------IKPMCLLCPKRGGAM 310          
BLAST of EWM25130.1 vs. NCBI_GenBank
Match: gi|1013939167|gb|KYQ92856.1| (PHD zinc finger-containing protein [Dictyostelium lacteum])

HSP 1 Score: 76.2554 bits (186), Expect = 5.340e-11
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = 0
Query:   48 MGPMGDRAKKEDCCVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRIAPMCELCHQKGGGL 132
            M P  +  +  D C +CF G    TN+IVYCD CD+  HQ+CY +  +PEG +FC  C       +++K +   C+LC +K G  
Sbjct:  295 MFPHFNSEEAGDVCAVCFDGTSDDTNQIVYCDGCDIAVHQECYSIVLIPEGHWFCQKC------ESSEKDVVK-CQLCGKKNGAF 372          
BLAST of EWM25130.1 vs. NCBI_GenBank
Match: gi|831783714|ref|XP_012757193.1| (hypothetical protein SAMD00019534_024410 [Acytostelium subglobosum LB1] >gi|735857825|dbj|GAM19266.1| hypothetical protein SAMD00019534_024410 [Acytostelium subglobosum LB1])

HSP 1 Score: 75.8702 bits (185), Expect = 5.978e-11
Identity = 35/85 (41.18%), Postives = 45/85 (52.94%), Query Frame = 0
Query:   48 MGPMGDRAKKEDCCVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRIAPMCELCHQKGGGL 132
            M P     + ED C +CF G    TN+IVYCD CD+  HQ+CYG+  +PEG +FC  C  A   + T       C LC +  G L
Sbjct:  250 MFPHFSAHEAEDVCSVCFDGTSDDTNQIVYCDGCDIAVHQECYGIVLIPEGHWFCQKCESANKDNIT-------CALCKKSSGAL 327          
The following BLAST results are available for this feature:
BLAST of EWM25130.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553196203|ref|XP_005856290.1|0.000e+0100.00phd zinc finger-containing protein [Nannochloropsi... [more]
gi|553196316|ref|XP_005856317.1|3.227e-1348.15kinesin-like protein, partial [Nannochloropsis gad... [more]
gi|585105645|gb|EWM24254.1|6.333e-1348.15bromodomain containing 1 [Nannochloropsis gaditana... [more]
gi|1160559899|ref|XP_020432501.1|9.752e-1240.00PHD zinc finger-containing protein [Polysphondyliu... [more]
gi|551548365|ref|XP_005761825.1|1.321e-1140.51hypothetical protein EMIHUDRAFT_57793, partial [Em... [more]
gi|330805108|ref|XP_003290529.1|2.061e-1141.56hypothetical protein DICPUDRAFT_81259 [Dictyosteli... [more]
gi|908426638|ref|XP_013074315.1|4.280e-1136.27PREDICTED: uncharacterized protein LOC106060844 is... [more]
gi|908426634|ref|XP_013074313.1|4.283e-1136.27PREDICTED: uncharacterized protein LOC106060844 is... [more]
gi|1013939167|gb|KYQ92856.1|5.340e-1137.65PHD zinc finger-containing protein [Dictyostelium ... [more]
gi|831783714|ref|XP_012757193.1|5.978e-1141.18hypothetical protein SAMD00019534_024410 [Acytoste... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5563rna5563Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications