EWM25130.1, cds5549 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25130.1 vs. NCBI_GenBank
Match: gi|553196203|ref|XP_005856290.1| (phd zinc finger-containing protein [Nannochloropsis gaditana CCMP526] >gi|422292768|gb|EKU20070.1| phd zinc finger-containing protein [Nannochloropsis gaditana CCMP526] >gi|585106768|gb|EWM25130.1| phd zinc finger-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 904.434 bits (2336), Expect = 0.000e+0 Identity = 437/437 (100.00%), Postives = 437/437 (100.00%), Query Frame = 0 Query: 1 MLTINQSTDQEAGSGPLTDDKGDLQSQNFGASNQCVENSTQPTRSGAMGPMGDRAKKEDCCVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRIAPMCELCHQKGGGLLRIWIVDRGEGQYSDEDYVRDGSEDEDNDCGSTFEVAACIRPSDKANAFASISTSLPNPLAEPLFVHKVCALAGWNQQPRLVRFVAGTNAQVAVVSRDIVATYRNLKAQEETMASRWQAADALSCGICDSSVGLLVRCCHHDPDSAVFRCSFSAHAACAFNAAQASLLLHDVQRSPLVTVWCSAHRPEPSVERPGGDAVAKCLGFLLPPLASPLDQHEQDGRQYQPCHTPLLRHLVHERRKEGYGRLGGYLDDKLRLLERRMSLAGALPVPTHSTDGRLILCAAGRAEEMFACRQRLPATPEVRR 437 MLTINQSTDQEAGSGPLTDDKGDLQSQNFGASNQCVENSTQPTRSGAMGPMGDRAKKEDCCVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRIAPMCELCHQKGGGLLRIWIVDRGEGQYSDEDYVRDGSEDEDNDCGSTFEVAACIRPSDKANAFASISTSLPNPLAEPLFVHKVCALAGWNQQPRLVRFVAGTNAQVAVVSRDIVATYRNLKAQEETMASRWQAADALSCGICDSSVGLLVRCCHHDPDSAVFRCSFSAHAACAFNAAQASLLLHDVQRSPLVTVWCSAHRPEPSVERPGGDAVAKCLGFLLPPLASPLDQHEQDGRQYQPCHTPLLRHLVHERRKEGYGRLGGYLDDKLRLLERRMSLAGALPVPTHSTDGRLILCAAGRAEEMFACRQRLPATPEVRR Sbjct: 1 MLTINQSTDQEAGSGPLTDDKGDLQSQNFGASNQCVENSTQPTRSGAMGPMGDRAKKEDCCVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRIAPMCELCHQKGGGLLRIWIVDRGEGQYSDEDYVRDGSEDEDNDCGSTFEVAACIRPSDKANAFASISTSLPNPLAEPLFVHKVCALAGWNQQPRLVRFVAGTNAQVAVVSRDIVATYRNLKAQEETMASRWQAADALSCGICDSSVGLLVRCCHHDPDSAVFRCSFSAHAACAFNAAQASLLLHDVQRSPLVTVWCSAHRPEPSVERPGGDAVAKCLGFLLPPLASPLDQHEQDGRQYQPCHTPLLRHLVHERRKEGYGRLGGYLDDKLRLLERRMSLAGALPVPTHSTDGRLILCAAGRAEEMFACRQRLPATPEVRR 437
BLAST of EWM25130.1 vs. NCBI_GenBank
Match: gi|553196316|ref|XP_005856317.1| (kinesin-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422292738|gb|EKU20040.1| kinesin-like protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 82.4185 bits (202), Expect = 3.227e-13 Identity = 39/81 (48.15%), Postives = 49/81 (60.49%), Query Frame = 0 Query: 61 CVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRIAPMCELCHQKGGGLLRI----WI 137 C++CF G +NEIV+CD CD+ HQ CYGLP VPEGDFFCD C + + D+ IA C LC + GG R W+ Sbjct: 418 CMVCFDGSSTESNEIVFCDGCDMAAHQACYGLPEVPEGDFFCDKCLGL--MEDPDRPIA--CTLCPEVHGGFKRTLDGEWV 494
BLAST of EWM25130.1 vs. NCBI_GenBank
Match: gi|585105645|gb|EWM24254.1| (bromodomain containing 1 [Nannochloropsis gaditana]) HSP 1 Score: 82.4185 bits (202), Expect = 6.333e-13 Identity = 39/81 (48.15%), Postives = 49/81 (60.49%), Query Frame = 0 Query: 61 CVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRIAPMCELCHQKGGGLLRI----WI 137 C++CF G +NEIV+CD CD+ HQ CYGLP VPEGDFFCD C + + D+ IA C LC + GG R W+ Sbjct: 716 CMVCFDGSSTESNEIVFCDGCDMAAHQACYGLPEVPEGDFFCDKCLGL--MEDPDRPIA--CTLCPEVHGGFKRTLDGEWV 792 HSP 2 Score: 62.7734 bits (151), Expect = 8.420e-7 Identity = 30/97 (30.93%), Postives = 46/97 (47.42%), Query Frame = 0 Query: 36 VENSTQPTRSGAMGPMGDRAKKEDCCVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRIAPMCELCHQKGGGL 132 V + P + + + + ++++ C +C +G + N+IV CD CDL HQ CYG+ +P G +FC C D C LC GG L Sbjct: 7 VIDPVSPVQELSENSVKESSEEDILCTVCGEGHSEVENQIVLCDHCDLSVHQGCYGVEAIPVGKWFCRLCEYGMDCHKV------RCSLCGHGGGAL 97
BLAST of EWM25130.1 vs. NCBI_GenBank
Match: gi|1160559899|ref|XP_020432501.1| (PHD zinc finger-containing protein [Polysphondylium pallidum PN500] >gi|281206192|gb|EFA80381.1| PHD zinc finger-containing protein [Polysphondylium pallidum PN500]) HSP 1 Score: 78.5666 bits (192), Expect = 9.752e-12 Identity = 34/85 (40.00%), Postives = 45/85 (52.94%), Query Frame = 0 Query: 48 MGPMGDRAKKEDCCVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRIAPMCELCHQKGGGL 132 M P + ED C +CF G TN+IVYCD CD+ HQ+CYG+ +PEG +FC C + + C LC+ K G L Sbjct: 353 MFPHFSSIEAEDVCSVCFDGTSDDTNQIVYCDGCDIAVHQECYGIRLIPEGHWFCQKC-------ESPAKATISCRLCNMKNGAL 430
BLAST of EWM25130.1 vs. NCBI_GenBank
Match: gi|551548365|ref|XP_005761825.1| (hypothetical protein EMIHUDRAFT_57793, partial [Emiliania huxleyi CCMP1516] >gi|485610703|gb|EOD09396.1| hypothetical protein EMIHUDRAFT_57793, partial [Emiliania huxleyi CCMP1516]) HSP 1 Score: 72.0182 bits (175), Expect = 1.321e-11 Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = 0 Query: 60 CCVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPR--VPEGD--FFCDFCAIARDISNTDKRIAPMCELCHQKGGGLLR 134 CC +C +G+++ N+I++CD+CDL HQ CYG +PEGD +FCD C ++ + +R+ C LC +KGG + R Sbjct: 6 CCNVCGEGDWEEDNKIIFCDSCDLAVHQVCYGAGARVIPEGDAPWFCDMCKFSKRAGGSSRRVEQECILCPEKGGAMKR 84
BLAST of EWM25130.1 vs. NCBI_GenBank
Match: gi|330805108|ref|XP_003290529.1| (hypothetical protein DICPUDRAFT_81259 [Dictyostelium purpureum] >gi|325079359|gb|EGC32963.1| hypothetical protein DICPUDRAFT_81259 [Dictyostelium purpureum]) HSP 1 Score: 77.411 bits (189), Expect = 2.061e-11 Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 0 Query: 56 KKEDCCVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRIAPMCELCHQKGGGL 132 + +D C +CF G TN+IVYCD CD+ HQ CYG+ +PEG +FC C S +I+ CE+C +K G Sbjct: 447 ESDDVCAVCFDGTSDDTNQIVYCDGCDIAVHQDCYGILLIPEGQWFCQKCE-----SPEKSQIS--CEICDKKSGAF 516
BLAST of EWM25130.1 vs. NCBI_GenBank
Match: gi|908426638|ref|XP_013074315.1| (PREDICTED: uncharacterized protein LOC106060844 isoform X2 [Biomphalaria glabrata]) HSP 1 Score: 76.2554 bits (186), Expect = 4.280e-11 Identity = 37/102 (36.27%), Postives = 54/102 (52.94%), Query Frame = 0 Query: 33 NQCV--ENSTQPTRSGAMGPMGDRAKKEDCCVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRIAPMCELCHQKGGGL 132 NQC N+ + T G +G ++ C +C E + TNE+V+CD CD+ HQ CYG+ +PEG + C CA+ I PMC LC ++GG + Sbjct: 216 NQCYIKTNALKKTEEG----LGIEYDEDVACDVCHMLESEDTNEMVFCDGCDICVHQACYGIQTIPEGSWLCRICALG---------IKPMCLLCPKRGGAM 304
BLAST of EWM25130.1 vs. NCBI_GenBank
Match: gi|908426634|ref|XP_013074313.1| (PREDICTED: uncharacterized protein LOC106060844 isoform X1 [Biomphalaria glabrata] >gi|908426636|ref|XP_013074314.1| PREDICTED: uncharacterized protein LOC106060844 isoform X1 [Biomphalaria glabrata]) HSP 1 Score: 76.2554 bits (186), Expect = 4.283e-11 Identity = 37/102 (36.27%), Postives = 54/102 (52.94%), Query Frame = 0 Query: 33 NQCV--ENSTQPTRSGAMGPMGDRAKKEDCCVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRIAPMCELCHQKGGGL 132 NQC N+ + T G +G ++ C +C E + TNE+V+CD CD+ HQ CYG+ +PEG + C CA+ I PMC LC ++GG + Sbjct: 222 NQCYIKTNALKKTEEG----LGIEYDEDVACDVCHMLESEDTNEMVFCDGCDICVHQACYGIQTIPEGSWLCRICALG---------IKPMCLLCPKRGGAM 310
BLAST of EWM25130.1 vs. NCBI_GenBank
Match: gi|1013939167|gb|KYQ92856.1| (PHD zinc finger-containing protein [Dictyostelium lacteum]) HSP 1 Score: 76.2554 bits (186), Expect = 5.340e-11 Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = 0 Query: 48 MGPMGDRAKKEDCCVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRIAPMCELCHQKGGGL 132 M P + + D C +CF G TN+IVYCD CD+ HQ+CY + +PEG +FC C +++K + C+LC +K G Sbjct: 295 MFPHFNSEEAGDVCAVCFDGTSDDTNQIVYCDGCDIAVHQECYSIVLIPEGHWFCQKC------ESSEKDVVK-CQLCGKKNGAF 372
BLAST of EWM25130.1 vs. NCBI_GenBank
Match: gi|831783714|ref|XP_012757193.1| (hypothetical protein SAMD00019534_024410 [Acytostelium subglobosum LB1] >gi|735857825|dbj|GAM19266.1| hypothetical protein SAMD00019534_024410 [Acytostelium subglobosum LB1]) HSP 1 Score: 75.8702 bits (185), Expect = 5.978e-11 Identity = 35/85 (41.18%), Postives = 45/85 (52.94%), Query Frame = 0 Query: 48 MGPMGDRAKKEDCCVICFQGEFQSTNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRIAPMCELCHQKGGGL 132 M P + ED C +CF G TN+IVYCD CD+ HQ+CYG+ +PEG +FC C A + T C LC + G L Sbjct: 250 MFPHFSAHEAEDVCSVCFDGTSDDTNQIVYCDGCDIAVHQECYGIVLIPEGHWFCQKCESANKDNIT-------CALCKKSSGAL 327 The following BLAST results are available for this feature:
BLAST of EWM25130.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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