EWM25153.1, cds5536 (CDS) Nannochloropsis gaditana

Overview
NameEWM25153.1
Unique Namecds5536
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:262567..263670 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25153.1
ProductATPase, F0 complex, subunit B, mitochondrial
Orig transcript idgnl|cribi|Naga_100016g59.2962.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:262567..263670 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0015078proton transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0015986ATP synthesis coupled proton transport
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0016020membrane
GO:0000276mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Vocabulary: INTERPRO
TermDefinition
IPR013837ATPase_F0_sub_B/B_chain
IPR008688ATPase_B_chain/sub_B/MI25
Homology
BLAST of EWM25153.1 vs. NCBI_GenBank
Match: gi|585106791|gb|EWM25153.1| (ATPase, F0 complex, subunit B, mitochondrial [Nannochloropsis gaditana])

HSP 1 Score: 743.036 bits (1917), Expect = 0.000e+0
Identity = 367/367 (100.00%), Postives = 367/367 (100.00%), Query Frame = 0
Query:    1 MSLSLLRIKQEGSRLVRSFSCWCARAGSVCGGIVSPEAYFVSNMLSILSRRALQASARRQCLSAASTFHSGPVRRDAAANSPAAPAAVDDLSRKPADVSLEGPLERYGLTDWKVYVPAGLALSVPFLANEWYILSEETQLVAAFIAFSTTVYKYAGGAIGRSLDERQEAIIEEINRLEELELRLYKETIDAATLEKTIVEDLTALEAKSGEMAHKLEAVLAGEVKHRIRDQYVRWLDAAVASEKTGKKALVQSFLDRTAVQVTKNFASDAKLKKAAVDQVVAILKDPAAEQADLVGAEFERVGKTMWEELVKKETGGAAPKEQVATLAAEIKAIKAKGPAVSEMDLDNAVRVYHTAMKGGIKPAQLR 367
            MSLSLLRIKQEGSRLVRSFSCWCARAGSVCGGIVSPEAYFVSNMLSILSRRALQASARRQCLSAASTFHSGPVRRDAAANSPAAPAAVDDLSRKPADVSLEGPLERYGLTDWKVYVPAGLALSVPFLANEWYILSEETQLVAAFIAFSTTVYKYAGGAIGRSLDERQEAIIEEINRLEELELRLYKETIDAATLEKTIVEDLTALEAKSGEMAHKLEAVLAGEVKHRIRDQYVRWLDAAVASEKTGKKALVQSFLDRTAVQVTKNFASDAKLKKAAVDQVVAILKDPAAEQADLVGAEFERVGKTMWEELVKKETGGAAPKEQVATLAAEIKAIKAKGPAVSEMDLDNAVRVYHTAMKGGIKPAQLR
Sbjct:    1 MSLSLLRIKQEGSRLVRSFSCWCARAGSVCGGIVSPEAYFVSNMLSILSRRALQASARRQCLSAASTFHSGPVRRDAAANSPAAPAAVDDLSRKPADVSLEGPLERYGLTDWKVYVPAGLALSVPFLANEWYILSEETQLVAAFIAFSTTVYKYAGGAIGRSLDERQEAIIEEINRLEELELRLYKETIDAATLEKTIVEDLTALEAKSGEMAHKLEAVLAGEVKHRIRDQYVRWLDAAVASEKTGKKALVQSFLDRTAVQVTKNFASDAKLKKAAVDQVVAILKDPAAEQADLVGAEFERVGKTMWEELVKKETGGAAPKEQVATLAAEIKAIKAKGPAVSEMDLDNAVRVYHTAMKGGIKPAQLR 367          
BLAST of EWM25153.1 vs. NCBI_GenBank
Match: gi|669144820|ref|XP_008607972.1| (hypothetical protein SDRG_04092 [Saprolegnia diclina VS20] >gi|530740138|gb|EQC38380.1| hypothetical protein SDRG_04092 [Saprolegnia diclina VS20])

HSP 1 Score: 116.316 bits (290), Expect = 3.054e-26
Identity = 86/273 (31.50%), Postives = 139/273 (50.92%), Query Frame = 0
Query:   47 ILSRRALQAS--ARRQCLS-AASTFHSGPVRRDAAANSPAAPAAVDDLSRKPADVSLEGPLERYGLTDWKVYVPAGLALSVPFLANEWYILSEETQLVAAFIAFSTTVYKYAGGAIGRSLDERQEAIIEEINRLEELELRLYKETIDAATLEKTIVEDLTALEAKSGEMAHKLEAVLAGEVKHRIRDQYVRWLDAAVASEKTGKKALVQSFLDRTAVQVTKNFASDAK-LKKAAVDQVVAILKD-PAAEQADLVGAEFERVGKTMWEELVKKE 314
            +LSR AL+++  ARR  L    ++FH+G +R         A AA +           +G  ++ GL DWK+ +P  LA S+P L+N +Y L  E+QL   F+ F T+ YK+ G A+G   + R  AI+ E N +E+  L + KET+ A     TI +D+ AL     E    +  V + +++H+ RD YV+ L+A    E++  + L  + + + A  V   FAS  K +K  A    + +L + P   + D V A F +  +   E L K++
Sbjct:    1 MLSRFALRSATAARRSALKPVGASFHTGALRLKEEKEGEVAVAAENH----------DGVFQKIGLDDWKISMPLVLACSIPALSNGFYELGAESQLACCFLLFCTSAYKFGGDAVGSYFEARANAILAEQNAVEDANLAVAKETLKAHEAILTIRKDIDALGVAHEEALALMCRVQSQKLRHKTRDVYVKNLEAIHNLEQSYNQQLQDAMISQAAEAVRSQFASGKKAVKTEAFQMALDVLSEKPDDNKQDPVAAAFGKELRAFAENLEKQQ 263          
BLAST of EWM25153.1 vs. NCBI_GenBank
Match: gi|813191970|ref|XP_012207867.1| (hypothetical protein SPRG_12427 [Saprolegnia parasitica CBS 223.65] >gi|641527108|gb|KDO21420.1| hypothetical protein SPRG_12427 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 115.931 bits (289), Expect = 4.642e-26
Identity = 86/273 (31.50%), Postives = 139/273 (50.92%), Query Frame = 0
Query:   47 ILSRRALQAS--ARRQCLSA-ASTFHSGPVRRDAAANSPAAPAAVDDLSRKPADVSLEGPLERYGLTDWKVYVPAGLALSVPFLANEWYILSEETQLVAAFIAFSTTVYKYAGGAIGRSLDERQEAIIEEINRLEELELRLYKETIDAATLEKTIVEDLTALEAKSGEMAHKLEAVLAGEVKHRIRDQYVRWLDAAVASEKTGKKALVQSFLDRTAVQVTKNFASDAK-LKKAAVDQVVAILKD-PAAEQADLVGAEFERVGKTMWEELVKKE 314
            +LSR AL+++  ARR  L    ++FH+G +R         A AA +           +G  ++ GL DWK+ +P  LA S+P L+N +Y L  E+QL   F+ F T+ YK+ G A+G   + R  AI+ E N +E+  L + KET+ A     TI +D+ AL     E    +  V + +++H+ RD YV+ L+A    E++  + L  + + + A  V   FAS  K +K  A    + +L + P   + D V A F +  +   E L K++
Sbjct:    1 MLSRFALRSATAARRSALKPLGASFHTGALRLKEEKEGEVAVAAENH----------DGVFQKIGLDDWKISMPLVLACSIPALSNGFYELGAESQLACCFLLFCTSAYKFGGDAVGSYFEARANAILAEQNAVEDANLAVAKETLKAHEAILTIRKDIDALGVAHEEALALMCRVQSQKLRHKTRDVYVKNLEAIHNLEQSYNQQLQDAMISQAAEAVRSQFASGKKAVKTEAFQMALDVLSEKPDDNKQDPVAAAFGKELRAFAENLEKQQ 263          
BLAST of EWM25153.1 vs. NCBI_GenBank
Match: gi|1173937090|gb|OQR87943.1| (hypothetical protein ACHHYP_07793 [Achlya hypogyna])

HSP 1 Score: 112.464 bits (280), Expect = 8.728e-25
Identity = 82/273 (30.04%), Postives = 139/273 (50.92%), Query Frame = 0
Query:   47 ILSRRALQAS--ARRQCLSA-ASTFHSGPVRRDAAANSPAAPAAVDDLSRKPADVSLEGPLERYGLTDWKVYVPAGLALSVPFLANEWYILSEETQLVAAFIAFSTTVYKYAGGAIGRSLDERQEAIIEEINRLEELELRLYKETIDAATLEKTIVEDLTALEAKSGEMAHKLEAVLAGEVKHRIRDQYVRWLDAAVASEKTGKKALVQSFLDRTAVQVTKNFASDAK-LKKAAVDQVVAILKD-PAAEQADLVGAEFERVGKTMWEELVKKE 314
            +LSR AL+++  ARR  +    ++FH+G +R         A AA +           +G  ++ GL DWK+ +P  LA S+P ++N +Y L  E+QL   F+ F T+ YK+ G A+G   + R  AI+ E N +E+  L + +ET+ A     TI +D+ AL     E    +  V + +++H+ RD YV+ L+A    E++  + L  + + + A  V   FA+  K +K  A    + +L + P   + D V A F +  +   E L K++
Sbjct:    1 MLSRFALRSATAARRSAMKPLGASFHTGALRLKEEKEGEVAVAAENH----------DGVFQKIGLDDWKISMPLVLACSIPAISNGFYELGAESQLACCFLLFCTSAYKFGGDAVGSYFEARANAILAEQNAVEDANLAVAQETLKAHEAILTIRKDIDALGVAHKEALALMCHVQSQKLRHKTRDVYVKNLEAIHQLEQSYNQQLQDAMISQAANNVRSAFAAGKKAVKTEAFQMALDVLSEKPDDNKQDPVAAAFGKELRAFAENLEKQQ 263          
BLAST of EWM25153.1 vs. NCBI_GenBank
Match: gi|325181423|emb|CCA15839.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 109.383 bits (272), Expect = 9.897e-24
Identity = 77/249 (30.92%), Postives = 124/249 (49.80%), Query Frame = 0
Query:   68 FHSGPVR---RDAAANSPAAPAAVDDLSRKPADVSLEGPLERYGLTDWKVYVPAGLALSVPFLANEWYILSEETQLVAAFIAFSTTVYKYAGGAIGRSLDERQEAIIEEINRLEELELRLYKETIDAATLEKTIVEDLTALEAKSGEMAHKLEAVLAGEVKHRIRDQYVRWLDAAVASEKTGKKALVQSFLDRTAVQVTKNFASDAK-LKKAAVDQVVAIL--KDPAAEQADLVGAEFERVGKTMWEEL 310
            FH+ P R   R  ++++     +V++    P     +  LE+YGL DWKV  P G+AL+VP L+   Y+++EETQL A F  F T+VYK+ G AI    D R +AI++E N +E+  + L KET+ A      I +D+  +     +    +  V A +++H  R  +++ LDA  + E     AL  + + +    V        K  K AA    + IL   D   E+ D + A F +  ++  E+L
Sbjct:   13 FHTLPSRPAFRSFSSHALEQKTSVNE----PTTSEKQSLLEKYGLDDWKVTAPIGVALAVPILSKGIYVINEETQLAACFFLFCTSVYKFGGKAISSYFDARAQAILQEHNAVEDANIELAKETLKAHESLLAIRDDVALVTEAHKDAVALMCQVQAYKLRHETRITFIKNLDAIKSIEDECNAALKAALIRKATENVRSILVKGGKPTKAAAFKHALNILSQSDMDDEKEDEIAALFAKELRSCAEKL 257          
BLAST of EWM25153.1 vs. NCBI_GenBank
Match: gi|953491627|emb|CEG45636.1| (atp synthase subunit mitochondrial [Plasmopara halstedii])

HSP 1 Score: 107.457 bits (267), Expect = 5.204e-23
Identity = 79/244 (32.38%), Postives = 122/244 (50.00%), Query Frame = 0
Query:   67 TFHS-GPVRRDAAANSPAAPAAVDDLSRKPADVSLEGPLERYGLTDWKVYVPAGLALSVPFLANEWYILSEETQLVAAFIAFSTTVYKYAGGAIGRSLDERQEAIIEEINRLEELELRLYKETIDAATLEKTIVEDLTALEAKSGEMAHKLEAVLAGEVKHRIRDQYVRWLDAAVASEKTGKKALVQSFLD------RTAVQVTKNFASDAKLKKAAVDQVVAILKDPAAEQA--DLVGAEFER 301
            +FHS G VR+D A  +   P            V  +G L++ GLTDWK+  P   AL++P ++N +Y+L+EE+QL   F+ F T  YK+ G  I    DER  AI+ E N +E+  L L KET++       I ED+ A+     E    +  V A +++H+ RD +V+ L++    E + K  L +  +       RT VQ       D KLK+ A    + IL +   +++  D V A F +
Sbjct:   27 SFHSTGSVRKDEA-QAEEIP------------VPTQGLLDQAGLTDWKISAPIIGALAIPAISNHFYVLNEESQLACCFLLFCTATYKFGGEMIASYFDERAAAILSEHNAVEDANLALAKETLETHKSMLNIHEDIAAVAEAHKEAIALMCKVQAYKLRHKTRDTFVKNLESIRQIESSYKLELQRCMVASATSKVRTVVQ-----KGDKKLKETAFRHALDILGNVDVDESKEDDVAALFSK 252          
BLAST of EWM25153.1 vs. NCBI_GenBank
Match: gi|698786157|ref|XP_009826122.1| (hypothetical protein H257_03641 [Aphanomyces astaci] >gi|574118950|gb|ETV84430.1| hypothetical protein H257_03641 [Aphanomyces astaci])

HSP 1 Score: 105.916 bits (263), Expect = 1.899e-22
Identity = 83/267 (31.09%), Postives = 127/267 (47.57%), Query Frame = 0
Query:   47 ILSRRALQASARRQCLSAASTFHSGPVRRDAAANSPAAPAAVDDLSRKPADVSLEGPLERYGLTDWKVYVPAGLALSVPFLANEWYILSEETQLVAAFIAFSTTVYKYAGGAIGRSLDERQEAIIEEINRLEELELRLYKETIDAATLEKTIVEDLTALEAKSGEMAHKLEAVLAGEVKHRIRDQYVRWLDAAVASEKTGKKALVQSFLDRTAVQVTKNFASDAKLKKAAVDQV-VAILKDPAAEQA--DLVGAEFERVGKTMWEEL 310
            +LSR AL+ +  R     A+ FH+G  R+             D+ S           L +YGL D  + +P   A+S+P ++N WY L  ETQL   F  F T+ YKY GGAIG   + R +AI+ E N +E+  L L KET+ A     TI +D+  L     E    L  V   +++H+ RD +V+ LDA    E++  + L  + +      V K  ++  K  KA   Q+ + IL +   +++  D V A F +  +   E L
Sbjct:    1 MLSRVALRTA--RLSKPTAAAFHTGAFRQQEEKKDGEVAIPADNRSF----------LNKYGLDDPLISLPIIAAVSIPAISNGWYELGAETQLACCFALFVTSAYKYGGGAIGSYFESRADAILAEQNAVEDANLALAKETLKAHESILTIKKDIATLGVAHEEALALLCQVQNAKLRHKTRDTFVKNLDAIYQLEQSYNQELQNAMIASATAAVRKTISAGKKETKAEAFQLALDILSEKNIDESKPDAVAAAFGKELRAFAEHL 255          
BLAST of EWM25153.1 vs. NCBI_GenBank
Match: gi|635367063|emb|CCI44691.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 105.531 bits (262), Expect = 2.544e-22
Identity = 76/250 (30.40%), Postives = 125/250 (50.00%), Query Frame = 0
Query:   94 KPADVSLEGPLERYGLTDWKVYVPAGLALSVPFLANEWYILSEETQLVAAFIAFSTTVYKYAGGAIGRSLDERQEAIIEEINRLEELELRLYKETIDAATLEKTIVEDLTALEAKSGEMAHKLEAVLAGEVKHRIRDQYVRWLDAAVASEKTGKKALVQSFLDRTAVQVTKNFASDAK-LKKAAVDQVVAIL--KDPAAEQADLVGAEFERVGKTMWEELVKKETGGAAP---KEQVATLAAEIKAIKAK 337
            +P     +  ++RYGL DWKV  P  +AL++P L+   Y+++EETQL A F  F T+VYK+ G A+    D R +AI++E N +E+  + L KET+ A      I +D+  +     +    +  V A +++H  R  ++R LDA  + E      L ++ + +    V        K  K AA+   + IL   D   E+ D + A F +  ++  E+L + + G   P    EQVA   +E+ A K +
Sbjct:   36 EPTTNEKQSLVQRYGLDDWKVSAPIAVALAIPILSKGIYVINEETQLAACFFLFCTSVYKFGGNAVSSYFDARAQAILQEHNAVEDANIELAKETLKAHESLLAIRDDVALVTEAHKDAVALMCQVQAYKLRHETRKTFIRNLDAIKSIEDECNAELKKALIRKATENVRSILVKGGKSTKAAALKHALNILSQSDMDDEKEDEIAALFAKELRSCAEKL-EAQQGTVVPLTEAEQVA-FQSELDAYKKR 283          
BLAST of EWM25153.1 vs. NCBI_GenBank
Match: gi|673033984|ref|XP_008870953.1| (hypothetical protein H310_07347 [Aphanomyces invadans] >gi|574473815|gb|ETW00818.1| hypothetical protein H310_07347 [Aphanomyces invadans])

HSP 1 Score: 105.145 bits (261), Expect = 3.953e-22
Identity = 83/267 (31.09%), Postives = 127/267 (47.57%), Query Frame = 0
Query:   47 ILSRRALQASARRQCLSAASTFHSGPVRRDAAANSPAAPAAVDDLSRKPADVSLEGPLERYGLTDWKVYVPAGLALSVPFLANEWYILSEETQLVAAFIAFSTTVYKYAGGAIGRSLDERQEAIIEEINRLEELELRLYKETIDAATLEKTIVEDLTALEAKSGEMAHKLEAVLAGEVKHRIRDQYVRWLDAAVASEKTGKKALVQSFLDRTAVQVTKNFASDAKLKKAAVDQV-VAILKDPAAEQA--DLVGAEFERVGKTMWEEL 310
            +LSR AL+ +       AA+ FH+G  R+             D+ S           L RYGL D  + +P   A+S+P ++N WY L  ETQL   F  F T+ YKY G AIG   + R +AI+ E N +E+  L L KET+ A     TI +D+  L     E    L  V   +++H+ RD +V+ L+A    E++  + L ++ +      V K  ++  K  KA   Q+ + IL + A ++   D V A F +  +   E L
Sbjct:    1 MLSRVALRTARLSAFKPAAAAFHTGAFRQQEEKKEGEVAIPADNRSF----------LNRYGLDDPLISLPIIAAVSIPAISNGWYELGAETQLACCFALFVTSAYKYGGSAIGSYFESRADAILAEQNAVEDANLALAKETLKAHESILTIKKDIATLGVAHEEALALLCQVQNAKLRHKTRDTFVKNLEAIYQLEQSYNQELQEAMVASATAAVRKTLSAGKKEVKAEAFQLALDILSEKAIDETKPDAVAAAFGKELRAFAEHL 257          
BLAST of EWM25153.1 vs. NCBI_GenBank
Match: gi|1214687799|gb|OWZ03960.1| (hypothetical protein PHMEG_00024223 [Phytophthora megakarya])

HSP 1 Score: 104.76 bits (260), Expect = 5.848e-22
Identity = 65/188 (34.57%), Postives = 99/188 (52.66%), Query Frame = 0
Query:   98 VSLEGPLERYGLTDWKVYVPAGLALSVPFLANEWYILSEETQLVAAFIAFSTTVYKYAGGAIGRSLDERQEAIIEEINRLEELELRLYKETIDAATLEKTIVEDLTALEAKSGEMAHKLEAVLAGEVKHRIRDQYVRWLDAAVASEKTGKKALVQSFLDRTAVQVTKNFA-SDAKLKKAAVDQVVAIL 284
            V  +G L++ GLTDWK+  P   ALS+P ++N +Y+L+EE+QL   F+ F +  YK+ G  I    DER  AI+ E N +E+  L L KET++       I ED+ A+     E    +  V A +++H+ RD +V+ L++    E +    L +S +     QV       D KLK AA    + IL
Sbjct:   45 VPTQGLLDQAGLTDWKISAPIIGALSIPAISNHFYVLNEESQLACCFLLFCSASYKFGGEMIASYFDERAAAILGEHNAVEDANLDLAKETLETHKAMLNIHEDIAAVAEAHKEAVALMCEVQAYKLRHKTRDTFVKNLESIREIESSYNLELQKSMVANATNQVRAVVQKGDKKLKDAAFKHALDIL 232          
The following BLAST results are available for this feature:
BLAST of EWM25153.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106791|gb|EWM25153.1|0.000e+0100.00ATPase, F0 complex, subunit B, mitochondrial [Nann... [more]
gi|669144820|ref|XP_008607972.1|3.054e-2631.50hypothetical protein SDRG_04092 [Saprolegnia dicli... [more]
gi|813191970|ref|XP_012207867.1|4.642e-2631.50hypothetical protein SPRG_12427 [Saprolegnia paras... [more]
gi|1173937090|gb|OQR87943.1|8.728e-2530.04hypothetical protein ACHHYP_07793 [Achlya hypogyna... [more]
gi|325181423|emb|CCA15839.1|9.897e-2430.92conserved hypothetical protein [Albugo laibachii N... [more]
gi|953491627|emb|CEG45636.1|5.204e-2332.38atp synthase subunit mitochondrial [Plasmopara hal... [more]
gi|698786157|ref|XP_009826122.1|1.899e-2231.09hypothetical protein H257_03641 [Aphanomyces astac... [more]
gi|635367063|emb|CCI44691.1|2.544e-2230.40unnamed protein product [Albugo candida][more]
gi|673033984|ref|XP_008870953.1|3.953e-2231.09hypothetical protein H310_07347 [Aphanomyces invad... [more]
gi|1214687799|gb|OWZ03960.1|5.848e-2234.57hypothetical protein PHMEG_00024223 [Phytophthora ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5550rna5550Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications