rna5550, rna5550 (mRNA) Nannochloropsis gaditana

Overview
Namerna5550
Unique Namerna5550
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1578
Alignment locationCM002466.1:262261..263922 +

Link to JBrowse

Properties
Property NameValue
ProductATPase, F0 complex, subunit B, mitochondrial
Orig transcript idgnl|cribi|Naga_100016g59.2962.mrna
Orig protein idgnl|cribi|Naga_100016g59.2962
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:262261..263922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100016g59gene5363Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5550rna5550-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25153.1cds5536Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5550 ID=rna5550|Name=rna5550|organism=Nannochloropsis gaditana|type=mRNA|length=1578bp
AGGATAAACTCGATCGACACCATTTCATCCGAGTTATACCGTGTCTTGCG
TTTTTCTCGACTCCTTTGAGAGGGAATACACTTCCATTCAGATCTTCAGT
CAACGTTATTCAAAGTGGTGCCCGCTAGAGTGCGCCAGTCTCCGCCTTCC
AGATTGTCGGTGGCACCTCCCCTCGCTTGTCTTCCGAAGGTTTAGCCTTC
GCCATGCTTACCACGAGACATGATTTTCAGTAATTTATATTTTACGTGTG
TTGCGTCTTACAAAGCGAATGTTTGTGCACTTTTTTTCGAGTGTACGGAT
GCTAGCATCTCTTGCCTACGACTTGCTGCCCTTTGCAGGGTTGTGAAGCG
CACAAGGTTCACTTGCGTGGCACGGCACGGGAACCCCTCATTCCTTCTAT
TTCGCCCTCTTCTTTTCGTCCTCATTTCTCATCCTTTTTTCATCACCTTG
TGGTGGATAGCTGTGGAGTATTATGCGACTGACTCGATTGCCGGCTGTGG
CAGGAGTGACAATTTGACTGACCGGTTTGAGGCAGTACCCTCCAGTCACC
TGCCAAGTCAACATTCTAGATCGCGCATCAAGCAATTTTTTTAAAATCTG
CCTCACATTTTGTTTTTCCATGCCCACAGTTTTCATTTTATCACTGCCCA
CAGTTTACACCCCGTAGACATGAAGTTCACAGCTCTCTTTACCGTGGCGG
CCCTTGCCAGCGCCAGCGCCTTTGTTGTCCCTGCCCCTGCGGCTTCCCTC
GCCGGACCTTTGGCAGCCGCTGGAAAAGACGCGGGTGGCTCTGTGGGTCC
GAATGAGTACGTGCCCGCCGGTCTGACCCGCGCGCAGTGGGCAGAGATCA
AGGCGAAGGACGCCGCTAAGAAGGGAACCAAGAAAGCGAAGCCCACTAAA
GTGGAGTCTCTGGATGAATGGCAGAAAGAGTTTGAGTCGGGAGAAACTGG
ACACCGATTCGCTAAGATGAAGTTCGATGGCTGGTACAAGAGGTGAGCGT
CACTTGCTCTCCTTTGAAGAAAAATAGCGCTGCGTAATCTGACGGTCTCT
CCCTGTCTCAGTTTCGAGCGTGCTTATGAAATGGCGCAGGGTCTTGAATG
GAAAAACGAGGGACCGGTATGGGGTTAGGCAGTTGTCTAGGATTTGTCTT
CTAGAAGGTGTGGTTTGTCTATAGATATATCTGGGTAAGTTTTCTATCGT
AGGATCTAGGAAGTGAAGAGAAATGAGGGATGATGAGTCGGCTGAAGCTT
AGCTGCCTGCCTCCGGAGGTGATGGATTAGTAACGGTCGAGTGAATGCTC
GGATGGAGCCCAGCCATGGTCTCGCGGCAAGTTTTTCCTCATTAATACAG
GAAGATGAGAAGAGCAACACGGGTGAGGGAAGTAGGAGCTTATTTATGTG
GAGCTTTATAACCCGACAAGGATTCTGTAGGACGTATAACTTAAGGAAGC
GATGCTGATTCACGAACCGGGGTATACCACAAGAGCCAGATTTCCGCTTT
GATTTCTTCTGGTCTCCTTGGGTTTGAAAACAATCCCTAATTTATCATCC
ATGCCCGCAGTCCTTCCGAAGCGATACG
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protein sequence of rna5550

>rna5550-protein ID=rna5550-protein|Name=rna5550|organism=Nannochloropsis gaditana|type=polypeptide|length=367bp
MSLSLLRIKQEGSRLVRSFSCWCARAGSVCGGIVSPEAYFVSNMLSILSR
RALQASARRQCLSAASTFHSGPVRRDAAANSPAAPAAVDDLSRKPADVSL
EGPLERYGLTDWKVYVPAGLALSVPFLANEWYILSEETQLVAAFIAFSTT
VYKYAGGAIGRSLDERQEAIIEEINRLEELELRLYKETIDAATLEKTIVE
DLTALEAKSGEMAHKLEAVLAGEVKHRIRDQYVRWLDAAVASEKTGKKAL
VQSFLDRTAVQVTKNFASDAKLKKAAVDQVVAILKDPAAEQADLVGAEFE
RVGKTMWEELVKKETGGAAPKEQVATLAAEIKAIKAKGPAVSEMDLDNAV
RVYHTAMKGGIKPAQLR
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mRNA from alignment at CM002466.1:262261..263922+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5550 ID=rna5550|Name=rna5550|organism=Nannochloropsis gaditana|type=mRNA|length=1662bp|location=Sequence derived from alignment at CM002466.1:262261..263922+ (Nannochloropsis gaditana)
ACTGAGACTACAAGCGTGGACtagtcttcctccccccgcacaTGCAGCCT
GCTTTCCACTCAAGGACAACCTTAAACGATATACCATGCTGCTCGGCGAG
GCACTTGAGCTTTTAGCTTTCTCAGGGCTGTTGATGCGTAAGCCCACAAA
CTggcttcctccgctccttgTCGCCCGCATCTTGCCCGCTGCCCGCATCT
TACATACCGCGAGGCGGACAAGAATGATGACACAACACAAGAATGGCGTT
CGTTGGCGCTTTGATGTCATCCCCCGATCGAAACTAAAAAAACTTTATTC
CTATAAATGTCTTTGTCACTATTACGTATCAAACAGGAGGGCTCACGGTT
GGTgcgctctttttcctgttgGTGTGCGAGAGCAGGCTCTGTTTGTGGTG
GCATTGTTAGTCCGGAAGCCTATTTCGTTTCCAATAtgctctccatcctc
tctcgTCGAGCATTGCAAGCATCGGCTCGTCGTCAGTGCTTATCAGCTGC
TTCTACTTTCCACTCTGGGCCCGTCCGACGTGATGCCGCAGCTAATTCCC
CCGCAGCCCCCGCGGCCGTCGATGATCTATCCCGCAAGCCCGCGGATGTG
TCCTTGGAGGGACCTCTTGAGCGGTATGGGCTCACGGACTGGAAAGTGTA
TGTGCCCGCCGGTCTGGCGCTGTCAGTGCCGTTCCTTGCAAATGAATGGT
ATATTCTGAGCGAGGAAACGCAGCTGGTGGCAGCCTTCATAGCTTTCAGC
ACAACCGTGTACAAGTACGCTGGTGGGGCGATTGGGCGGAGCCTGGACGA
ACGACAAGAGGCCATCATCGAAGAGATCAATcggctggaggagctggagc
tgAGGCTGTACAAGGAGACGATCGACGCGGCCACGCTAGAGAAGACGATA
GTGGAAGACTTGACGGCCTTGGAAGCGAAGAGCGGGGAGATGGCGCACAA
GCTGGAGGCCGTGCTGGCTGGCGAGGTGAAGCACCGTATCCGCGACCAGT
ATGTGCGATGGTTGGATGCGGCTGTAGCGTCTGAGAAGACGGGAAAGAAG
GCTCTTGTACAGAGCTTCCTGGACCGAACAGCCGTGCAGGTCACTAAGAA
TTTCGCCTCGGACGCCAAGCTCAAGAAAGCGGCGGTGGATCAGGTGGTAG
CTATTCTGAAAGACCCTGCCGCCGAACAAGCTGATCTGGTAGGCGCGGAA
TTCGAGCGGGTGGGAAAGACGATgtgggaggagctggtcaagaaggagac
gggcggGGCAGCGCCTAAAGAGCAAGTAGCAACCCTTGCGGCGGAGATAA
AAGCTATCAAGGCCAAGGGTCCTGCGGTGTCAGAGATGGACCTGGACAAT
GCCGTCCGTGTGTATCACACTGCcatgaaaggagggattaAACCCGCGCA
ACTCAGGTAGGGGGCCATCGGATGGGAGCACAGGGCCAGAGGCGGTGTCA
CCTGTCGAGAGGGCTGAAGGGTTACTGGCGCTGGGAATACCTTAAATTGC
CCGGGAGGAGTAGGTGAAGTTGAGGGCTAACGCACATAGACCACGCCACA
TTCTTAGCTGTCCGTGGGAGGTACAAATGATTTGAGCGTGGCGGGAAAct
gggagagaaaaaaaagagagagaagagaaacgAGCGAAAGAAGTAGAAGT
GTGAGAGAAGTG
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Coding sequence (CDS) from alignment at CM002466.1:262261..263922+

>rna5550 ID=rna5550|Name=rna5550|organism=Nannochloropsis gaditana|type=CDS|length=1104bp|location=Sequence derived from alignment at CM002466.1:262261..263922+ (Nannochloropsis gaditana)
ATGTCTTTGTCACTATTACGTATCAAACAGGAGGGCTCACGGTTGGTgcg
ctctttttcctgttgGTGTGCGAGAGCAGGCTCTGTTTGTGGTGGCATTG
TTAGTCCGGAAGCCTATTTCGTTTCCAATAtgctctccatcctctctcgT
CGAGCATTGCAAGCATCGGCTCGTCGTCAGTGCTTATCAGCTGCTTCTAC
TTTCCACTCTGGGCCCGTCCGACGTGATGCCGCAGCTAATTCCCCCGCAG
CCCCCGCGGCCGTCGATGATCTATCCCGCAAGCCCGCGGATGTGTCCTTG
GAGGGACCTCTTGAGCGGTATGGGCTCACGGACTGGAAAGTGTATGTGCC
CGCCGGTCTGGCGCTGTCAGTGCCGTTCCTTGCAAATGAATGGTATATTC
TGAGCGAGGAAACGCAGCTGGTGGCAGCCTTCATAGCTTTCAGCACAACC
GTGTACAAGTACGCTGGTGGGGCGATTGGGCGGAGCCTGGACGAACGACA
AGAGGCCATCATCGAAGAGATCAATcggctggaggagctggagctgAGGC
TGTACAAGGAGACGATCGACGCGGCCACGCTAGAGAAGACGATAGTGGAA
GACTTGACGGCCTTGGAAGCGAAGAGCGGGGAGATGGCGCACAAGCTGGA
GGCCGTGCTGGCTGGCGAGGTGAAGCACCGTATCCGCGACCAGTATGTGC
GATGGTTGGATGCGGCTGTAGCGTCTGAGAAGACGGGAAAGAAGGCTCTT
GTACAGAGCTTCCTGGACCGAACAGCCGTGCAGGTCACTAAGAATTTCGC
CTCGGACGCCAAGCTCAAGAAAGCGGCGGTGGATCAGGTGGTAGCTATTC
TGAAAGACCCTGCCGCCGAACAAGCTGATCTGGTAGGCGCGGAATTCGAG
CGGGTGGGAAAGACGATgtgggaggagctggtcaagaaggagacgggcgg
GGCAGCGCCTAAAGAGCAAGTAGCAACCCTTGCGGCGGAGATAAAAGCTA
TCAAGGCCAAGGGTCCTGCGGTGTCAGAGATGGACCTGGACAATGCCGTC
CGTGTGTATCACACTGCcatgaaaggagggattaAACCCGCGCAACTCAG
GTAG
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Synonyms
Publications