EWM25144.1, cds5523 (CDS) Nannochloropsis gaditana

Overview
NameEWM25144.1
Unique Namecds5523
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:235672..235917 +
Alignment locationCM002466.1:236037..236247 +
Alignment locationCM002466.1:236428..236705 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25144.1
Productpeptidylprolyl isomerase
Orig transcript idgnl|cribi|Naga_100016g72.2953.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:235672..235917 +
CM002466.1supercontigCM002466.1:236037..236247 +
CM002466.1supercontigCM002466.1:236428..236705 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0006457protein folding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR023566PPIase_FKBP
IPR001179PPIase_FKBP_dom
Homology
BLAST of EWM25144.1 vs. NCBI_GenBank
Match: gi|585106782|gb|EWM25144.1| (peptidylprolyl isomerase [Nannochloropsis gaditana])

HSP 1 Score: 501.13 bits (1289), Expect = 1.981e-179
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0
Query:    1 MSICSAPCSLHAPERYNLPVCLAVLPRLFTCKQLHLQMHLPTFLVLIASLTSTSSFMMTPLSRHAAGHLVKAAVACRPGISQMAVRRGSPQMKELINRQQHLRRATLGSLLGGFALFASGGGVARAEDGFETTSSGLKYKILKEGTGAIPAAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMELKSIG 244
            MSICSAPCSLHAPERYNLPVCLAVLPRLFTCKQLHLQMHLPTFLVLIASLTSTSSFMMTPLSRHAAGHLVKAAVACRPGISQMAVRRGSPQMKELINRQQHLRRATLGSLLGGFALFASGGGVARAEDGFETTSSGLKYKILKEGTGAIPAAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMELKSIG
Sbjct:    1 MSICSAPCSLHAPERYNLPVCLAVLPRLFTCKQLHLQMHLPTFLVLIASLTSTSSFMMTPLSRHAAGHLVKAAVACRPGISQMAVRRGSPQMKELINRQQHLRRATLGSLLGGFALFASGGGVARAEDGFETTSSGLKYKILKEGTGAIPAAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMELKSIG 244          
BLAST of EWM25144.1 vs. NCBI_GenBank
Match: gi|397635494|gb|EJK71879.1| (hypothetical protein THAOC_06637 [Thalassiosira oceanica])

HSP 1 Score: 182.185 bits (461), Expect = 4.465e-49
Identity = 92/167 (55.09%), Postives = 111/167 (66.47%), Query Frame = 0
Query:   79 GISQMAVRRGSPQMKELINRQQHLRRATLGSLLGGFALFASGG--GVARAEDGFETTSSGLKYKILKEGTGAIPAAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMELKSI 243
            G++ +AV  G      L NR  H RR  L            GG   +A+A+D F TT SG+KYK+ KEG GAIP+ GQ VK HYTGWLD F+S KKFDSS DRG+P  F+ G GQVI GWDE+   MK+GE+R +I+PP L YG RGAGGVIPPN+TLYF +EL  I
Sbjct:    7 GLAALAVGIGGVAAFNLSNR--HDRRDFLAKSSAAVTASVFGGLPQIAKADDDFITTDSGMKYKVTKEGDGAIPSPGQLVKAHYTGWLDSFDSEKKFDSSRDRGRPFQFKVGQGQVIRGWDESFSTMKVGERRQIILPPRLAYGERGAGGVIPPNSTLYFDVELLGI 171          
BLAST of EWM25144.1 vs. NCBI_GenBank
Match: gi|1210523784|dbj|GAX17466.1| (peptidylprolyl isomerase [Fistulifera solaris])

HSP 1 Score: 179.489 bits (454), Expect = 6.324e-49
Identity = 85/144 (59.03%), Postives = 103/144 (71.53%), Query Frame = 0
Query:   97 NRQQHLRRATLGSLLGGFALFASGGGVARAEDGFETTSSGLKYKILKEGTGAIPAAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMEL 240
            +R+  L +A +G+   G     S    A  +DGF TT SGLKYK++KEGTG IPA GQ+VK HYTGWLD F+SPKKFDSS DRG+P +F  G G+VI GWDE    M +GE+R +IIPP LGYG RGAGG+IP  ATLYF +EL
Sbjct:  493 DRRSFLSQAVVGASSIGATTVISTPAFAAEDDGFITTDSGLKYKVIKEGTGGIPAPGQTVKAHYTGWLDGFDSPKKFDSSRDRGRPFTFPVGAGRVIRGWDECFSTMSVGERRQIIIPPRLGYGDRGAGGLIPGGATLYFDVEL 636          
BLAST of EWM25144.1 vs. NCBI_GenBank
Match: gi|873232000|emb|CEM06696.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 160.614 bits (405), Expect = 8.633e-46
Identity = 82/151 (54.30%), Postives = 105/151 (69.54%), Query Frame = 0
Query:   98 RQQHLRRATLGSLLGGFALFA-----SGGGVARAED---GFETTSSGLKYKILKEGTGAIPAAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMEL 240
            R++    A   +L+GG AL       +   VA A+D   GFE ++SGL Y++++ G+G  P   Q V+V YTGWLD+FES KKFDSS DR +P  F AG GQVI GWDEA+L M++GEKR +IIPP LGYG RGAG VIPP+ATLYF ++L
Sbjct:   48 RRRFFESAAGSALIGGGALVTQHILLAPRSVAMAQDVPPGFEKSASGLMYQVVEAGSGGKPNQNQKVRVDYTGWLDNFESDKKFDSSVDRRRPFEFFAGGGQVIKGWDEAILSMQVGEKRRLIIPPELGYGKRGAGRVIPPDATLYFEVKL 198          
BLAST of EWM25144.1 vs. NCBI_GenBank
Match: gi|769919466|ref|WP_045053884.1| (peptidylprolyl isomerase [Aliterella atlantica] >gi|768386629|gb|KJH72464.1| peptidylprolyl isomerase [Aliterella atlantica CENA595])

HSP 1 Score: 157.918 bits (398), Expect = 4.216e-45
Identity = 75/115 (65.22%), Postives = 89/115 (77.39%), Query Frame = 0
Query:  126 AEDGFETTSSGLKYKILKEGTGAIPAAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMEL 240
            +++   TT SGLKY ++KEGTGA P  GQ+V VHYTG L+D     KFDSS DRG+P SF+ GVGQVI GWDE L  MK+G++R +IIPP LGYGARGAGGVIPPNATL F +EL
Sbjct:   56 SDENAVTTDSGLKYIVVKEGTGATPKTGQTVTVHYTGTLED---GSKFDSSRDRGQPFSFKLGVGQVIKGWDEGLSTMKVGDRRTLIIPPELGYGARGAGGVIPPNATLNFDVEL 167          
BLAST of EWM25144.1 vs. NCBI_GenBank
Match: gi|504968869|ref|WP_015155971.1| (FKBP-type peptidyl-prolyl cis-trans isomerase [Chroococcidiopsis thermalis] >gi|428010865|gb|AFY89428.1| peptidylprolyl isomerase FKBP-type [Chroococcidiopsis thermalis PCC 7203])

HSP 1 Score: 157.918 bits (398), Expect = 6.293e-45
Identity = 73/109 (66.97%), Postives = 86/109 (78.90%), Query Frame = 0
Query:  132 TTSSGLKYKILKEGTGAIPAAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMEL 240
            TT SGLKY +L+EG+G +P  GQ+V VHYTG L+D     KFDSS DRG+P SF+ G GQVI GWDEAL  MK+GE+R ++IPP LGYGARGAGGVIPPNATL F +EL
Sbjct:   73 TTDSGLKYTVLQEGSGEMPKKGQTVVVHYTGTLEDGS---KFDSSRDRGQPFSFKVGTGQVIKGWDEALSTMKVGERRQIVIPPELGYGARGAGGVIPPNATLIFDVEL 178          
BLAST of EWM25144.1 vs. NCBI_GenBank
Match: gi|1213733709|gb|OWY66404.1| (peptidylprolyl isomerase [cyanobacterium TDX16])

HSP 1 Score: 157.532 bits (397), Expect = 8.997e-45
Identity = 74/115 (64.35%), Postives = 88/115 (76.52%), Query Frame = 0
Query:  126 AEDGFETTSSGLKYKILKEGTGAIPAAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMEL 240
            ++D   TT SGLKY +L+EG G +P  GQ+V VHYTG L+D     KFDSS DRG+P SF+ G GQVI GWDEAL  MK+GE+R ++IPP LGYGARGAGGVIPPNATL F +EL
Sbjct:   62 SDDKAITTDSGLKYTVLQEGNGEMPKKGQTVVVHYTGTLEDGS---KFDSSRDRGQPFSFKVGTGQVIKGWDEALSTMKVGERRQIVIPPELGYGARGAGGVIPPNATLIFDVEL 173          
BLAST of EWM25144.1 vs. NCBI_GenBank
Match: gi|1181338823|ref|WP_084639708.1| (hypothetical protein [Geitlerinema sp. PCC 9228])

HSP 1 Score: 158.688 bits (400), Expect = 1.349e-44
Identity = 74/119 (62.18%), Postives = 88/119 (73.95%), Query Frame = 0
Query:  125 RAEDGFETTSSGLKYKILKEGTGAIPAAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMELKSI 243
             AE  + TT SGLKY +++EG GA P  GQ V VHYTG L+D     KFDSS DRG+P  FR GVGQVI GWDEA+L M++GE+R +IIPP LGYG+RGA GVIPP+ATL F +EL  I
Sbjct:  118 NAETEYVTTDSGLKYHVVQEGNGATPEVGQKVVVHYTGELEDG---TKFDSSRDRGQPFEFRVGVGQVIKGWDEAVLNMQVGERRELIIPPELGYGSRGAAGVIPPDATLIFDVELLRI 233          
BLAST of EWM25144.1 vs. NCBI_GenBank
Match: gi|506407259|ref|WP_015926978.1| (peptidylprolyl isomerase [Methylobacterium nodulans] >gi|219944873|gb|ACL55265.1| peptidylprolyl isomerase FKBP-type [Methylobacterium nodulans ORS 2060])

HSP 1 Score: 155.221 bits (391), Expect = 1.798e-44
Identity = 77/112 (68.75%), Postives = 85/112 (75.89%), Query Frame = 0
Query:  130 FETTSSGLKYKILKEGTGAIPAAGQSVKVHYTGWLDDF-ESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMEL 240
            F TT SGLKYK    GTG  PAAGQ+V VHYTGWLD+     KKFDSS DRG+PL+F  G GQVI GWDE L  MK+G KR ++IPP LGYGARGAGGVIPPNATL F +EL
Sbjct:   25 FTTTPSGLKYKDDVVGTGPAPAAGQTVSVHYTGWLDEKGRKGKKFDSSVDRGQPLNFAVGTGQVIKGWDEGLSTMKVGGKRTLVIPPDLGYGARGAGGVIPPNATLIFDVEL 136          
BLAST of EWM25144.1 vs. NCBI_GenBank
Match: gi|1210224262|dbj|BAZ43290.1| (FKBP-type peptidylprolyl isomerase [Chondrocystis sp. NIES-4102])

HSP 1 Score: 156.762 bits (395), Expect = 1.852e-44
Identity = 76/113 (67.26%), Postives = 87/113 (76.99%), Query Frame = 0
Query:  132 TTSSGLKYKILKEGTGAIPAAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMELKSIG 244
            TTSSGLKY ++KEG GA P  GQ+V VHYTG L+D     KFDSS DR +P SF+ GVGQVI GWDE +  MK+GE+R +IIPP LGYGARGAGGVIPPNATL F +EL  IG
Sbjct:   70 TTSSGLKYIVVKEGDGASPQNGQNVTVHYTGTLED---GTKFDSSRDRNRPFSFKIGVGQVIKGWDEGVGDMKVGERRTLIIPPELGYGARGAGGVIPPNATLIFDVELLKIG 179          
The following BLAST results are available for this feature:
BLAST of EWM25144.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106782|gb|EWM25144.1|1.981e-179100.00peptidylprolyl isomerase [Nannochloropsis gaditana... [more]
gi|397635494|gb|EJK71879.1|4.465e-4955.09hypothetical protein THAOC_06637 [Thalassiosira oc... [more]
gi|1210523784|dbj|GAX17466.1|6.324e-4959.03peptidylprolyl isomerase [Fistulifera solaris][more]
gi|873232000|emb|CEM06696.1|8.633e-4654.30unnamed protein product [Vitrella brassicaformis C... [more]
gi|769919466|ref|WP_045053884.1|4.216e-4565.22peptidylprolyl isomerase [Aliterella atlantica] >g... [more]
gi|504968869|ref|WP_015155971.1|6.293e-4566.97FKBP-type peptidyl-prolyl cis-trans isomerase [Chr... [more]
gi|1213733709|gb|OWY66404.1|8.997e-4564.35peptidylprolyl isomerase [cyanobacterium TDX16][more]
gi|1181338823|ref|WP_084639708.1|1.349e-4462.18hypothetical protein [Geitlerinema sp. PCC 9228][more]
gi|506407259|ref|WP_015926978.1|1.798e-4468.75peptidylprolyl isomerase [Methylobacterium nodulan... [more]
gi|1210224262|dbj|BAZ43290.1|1.852e-4467.26FKBP-type peptidylprolyl isomerase [Chondrocystis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5537rna5537Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications