EWM25144.1, cds5523 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25144.1 vs. NCBI_GenBank
Match: gi|585106782|gb|EWM25144.1| (peptidylprolyl isomerase [Nannochloropsis gaditana]) HSP 1 Score: 501.13 bits (1289), Expect = 1.981e-179 Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0
Query: 1 MSICSAPCSLHAPERYNLPVCLAVLPRLFTCKQLHLQMHLPTFLVLIASLTSTSSFMMTPLSRHAAGHLVKAAVACRPGISQMAVRRGSPQMKELINRQQHLRRATLGSLLGGFALFASGGGVARAEDGFETTSSGLKYKILKEGTGAIPAAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMELKSIG 244
MSICSAPCSLHAPERYNLPVCLAVLPRLFTCKQLHLQMHLPTFLVLIASLTSTSSFMMTPLSRHAAGHLVKAAVACRPGISQMAVRRGSPQMKELINRQQHLRRATLGSLLGGFALFASGGGVARAEDGFETTSSGLKYKILKEGTGAIPAAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMELKSIG
Sbjct: 1 MSICSAPCSLHAPERYNLPVCLAVLPRLFTCKQLHLQMHLPTFLVLIASLTSTSSFMMTPLSRHAAGHLVKAAVACRPGISQMAVRRGSPQMKELINRQQHLRRATLGSLLGGFALFASGGGVARAEDGFETTSSGLKYKILKEGTGAIPAAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMELKSIG 244
BLAST of EWM25144.1 vs. NCBI_GenBank
Match: gi|397635494|gb|EJK71879.1| (hypothetical protein THAOC_06637 [Thalassiosira oceanica]) HSP 1 Score: 182.185 bits (461), Expect = 4.465e-49 Identity = 92/167 (55.09%), Postives = 111/167 (66.47%), Query Frame = 0
Query: 79 GISQMAVRRGSPQMKELINRQQHLRRATLGSLLGGFALFASGG--GVARAEDGFETTSSGLKYKILKEGTGAIPAAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMELKSI 243
G++ +AV G L NR H RR L GG +A+A+D F TT SG+KYK+ KEG GAIP+ GQ VK HYTGWLD F+S KKFDSS DRG+P F+ G GQVI GWDE+ MK+GE+R +I+PP L YG RGAGGVIPPN+TLYF +EL I
Sbjct: 7 GLAALAVGIGGVAAFNLSNR--HDRRDFLAKSSAAVTASVFGGLPQIAKADDDFITTDSGMKYKVTKEGDGAIPSPGQLVKAHYTGWLDSFDSEKKFDSSRDRGRPFQFKVGQGQVIRGWDESFSTMKVGERRQIILPPRLAYGERGAGGVIPPNSTLYFDVELLGI 171
BLAST of EWM25144.1 vs. NCBI_GenBank
Match: gi|1210523784|dbj|GAX17466.1| (peptidylprolyl isomerase [Fistulifera solaris]) HSP 1 Score: 179.489 bits (454), Expect = 6.324e-49 Identity = 85/144 (59.03%), Postives = 103/144 (71.53%), Query Frame = 0
Query: 97 NRQQHLRRATLGSLLGGFALFASGGGVARAEDGFETTSSGLKYKILKEGTGAIPAAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMEL 240
+R+ L +A +G+ G S A +DGF TT SGLKYK++KEGTG IPA GQ+VK HYTGWLD F+SPKKFDSS DRG+P +F G G+VI GWDE M +GE+R +IIPP LGYG RGAGG+IP ATLYF +EL
Sbjct: 493 DRRSFLSQAVVGASSIGATTVISTPAFAAEDDGFITTDSGLKYKVIKEGTGGIPAPGQTVKAHYTGWLDGFDSPKKFDSSRDRGRPFTFPVGAGRVIRGWDECFSTMSVGERRQIIIPPRLGYGDRGAGGLIPGGATLYFDVEL 636
BLAST of EWM25144.1 vs. NCBI_GenBank
Match: gi|873232000|emb|CEM06696.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 160.614 bits (405), Expect = 8.633e-46 Identity = 82/151 (54.30%), Postives = 105/151 (69.54%), Query Frame = 0
Query: 98 RQQHLRRATLGSLLGGFALFA-----SGGGVARAED---GFETTSSGLKYKILKEGTGAIPAAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMEL 240
R++ A +L+GG AL + VA A+D GFE ++SGL Y++++ G+G P Q V+V YTGWLD+FES KKFDSS DR +P F AG GQVI GWDEA+L M++GEKR +IIPP LGYG RGAG VIPP+ATLYF ++L
Sbjct: 48 RRRFFESAAGSALIGGGALVTQHILLAPRSVAMAQDVPPGFEKSASGLMYQVVEAGSGGKPNQNQKVRVDYTGWLDNFESDKKFDSSVDRRRPFEFFAGGGQVIKGWDEAILSMQVGEKRRLIIPPELGYGKRGAGRVIPPDATLYFEVKL 198
BLAST of EWM25144.1 vs. NCBI_GenBank
Match: gi|769919466|ref|WP_045053884.1| (peptidylprolyl isomerase [Aliterella atlantica] >gi|768386629|gb|KJH72464.1| peptidylprolyl isomerase [Aliterella atlantica CENA595]) HSP 1 Score: 157.918 bits (398), Expect = 4.216e-45 Identity = 75/115 (65.22%), Postives = 89/115 (77.39%), Query Frame = 0
Query: 126 AEDGFETTSSGLKYKILKEGTGAIPAAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMEL 240
+++ TT SGLKY ++KEGTGA P GQ+V VHYTG L+D KFDSS DRG+P SF+ GVGQVI GWDE L MK+G++R +IIPP LGYGARGAGGVIPPNATL F +EL
Sbjct: 56 SDENAVTTDSGLKYIVVKEGTGATPKTGQTVTVHYTGTLED---GSKFDSSRDRGQPFSFKLGVGQVIKGWDEGLSTMKVGDRRTLIIPPELGYGARGAGGVIPPNATLNFDVEL 167
BLAST of EWM25144.1 vs. NCBI_GenBank
Match: gi|504968869|ref|WP_015155971.1| (FKBP-type peptidyl-prolyl cis-trans isomerase [Chroococcidiopsis thermalis] >gi|428010865|gb|AFY89428.1| peptidylprolyl isomerase FKBP-type [Chroococcidiopsis thermalis PCC 7203]) HSP 1 Score: 157.918 bits (398), Expect = 6.293e-45 Identity = 73/109 (66.97%), Postives = 86/109 (78.90%), Query Frame = 0
Query: 132 TTSSGLKYKILKEGTGAIPAAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMEL 240
TT SGLKY +L+EG+G +P GQ+V VHYTG L+D KFDSS DRG+P SF+ G GQVI GWDEAL MK+GE+R ++IPP LGYGARGAGGVIPPNATL F +EL
Sbjct: 73 TTDSGLKYTVLQEGSGEMPKKGQTVVVHYTGTLEDGS---KFDSSRDRGQPFSFKVGTGQVIKGWDEALSTMKVGERRQIVIPPELGYGARGAGGVIPPNATLIFDVEL 178
BLAST of EWM25144.1 vs. NCBI_GenBank
Match: gi|1213733709|gb|OWY66404.1| (peptidylprolyl isomerase [cyanobacterium TDX16]) HSP 1 Score: 157.532 bits (397), Expect = 8.997e-45 Identity = 74/115 (64.35%), Postives = 88/115 (76.52%), Query Frame = 0
Query: 126 AEDGFETTSSGLKYKILKEGTGAIPAAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMEL 240
++D TT SGLKY +L+EG G +P GQ+V VHYTG L+D KFDSS DRG+P SF+ G GQVI GWDEAL MK+GE+R ++IPP LGYGARGAGGVIPPNATL F +EL
Sbjct: 62 SDDKAITTDSGLKYTVLQEGNGEMPKKGQTVVVHYTGTLEDGS---KFDSSRDRGQPFSFKVGTGQVIKGWDEALSTMKVGERRQIVIPPELGYGARGAGGVIPPNATLIFDVEL 173
BLAST of EWM25144.1 vs. NCBI_GenBank
Match: gi|1181338823|ref|WP_084639708.1| (hypothetical protein [Geitlerinema sp. PCC 9228]) HSP 1 Score: 158.688 bits (400), Expect = 1.349e-44 Identity = 74/119 (62.18%), Postives = 88/119 (73.95%), Query Frame = 0
Query: 125 RAEDGFETTSSGLKYKILKEGTGAIPAAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMELKSI 243
AE + TT SGLKY +++EG GA P GQ V VHYTG L+D KFDSS DRG+P FR GVGQVI GWDEA+L M++GE+R +IIPP LGYG+RGA GVIPP+ATL F +EL I
Sbjct: 118 NAETEYVTTDSGLKYHVVQEGNGATPEVGQKVVVHYTGELEDG---TKFDSSRDRGQPFEFRVGVGQVIKGWDEAVLNMQVGERRELIIPPELGYGSRGAAGVIPPDATLIFDVELLRI 233
BLAST of EWM25144.1 vs. NCBI_GenBank
Match: gi|506407259|ref|WP_015926978.1| (peptidylprolyl isomerase [Methylobacterium nodulans] >gi|219944873|gb|ACL55265.1| peptidylprolyl isomerase FKBP-type [Methylobacterium nodulans ORS 2060]) HSP 1 Score: 155.221 bits (391), Expect = 1.798e-44 Identity = 77/112 (68.75%), Postives = 85/112 (75.89%), Query Frame = 0
Query: 130 FETTSSGLKYKILKEGTGAIPAAGQSVKVHYTGWLDDF-ESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMEL 240
F TT SGLKYK GTG PAAGQ+V VHYTGWLD+ KKFDSS DRG+PL+F G GQVI GWDE L MK+G KR ++IPP LGYGARGAGGVIPPNATL F +EL
Sbjct: 25 FTTTPSGLKYKDDVVGTGPAPAAGQTVSVHYTGWLDEKGRKGKKFDSSVDRGQPLNFAVGTGQVIKGWDEGLSTMKVGGKRTLVIPPDLGYGARGAGGVIPPNATLIFDVEL 136
BLAST of EWM25144.1 vs. NCBI_GenBank
Match: gi|1210224262|dbj|BAZ43290.1| (FKBP-type peptidylprolyl isomerase [Chondrocystis sp. NIES-4102]) HSP 1 Score: 156.762 bits (395), Expect = 1.852e-44 Identity = 76/113 (67.26%), Postives = 87/113 (76.99%), Query Frame = 0
Query: 132 TTSSGLKYKILKEGTGAIPAAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMELKSIG 244
TTSSGLKY ++KEG GA P GQ+V VHYTG L+D KFDSS DR +P SF+ GVGQVI GWDE + MK+GE+R +IIPP LGYGARGAGGVIPPNATL F +EL IG
Sbjct: 70 TTSSGLKYIVVKEGDGASPQNGQNVTVHYTGTLED---GTKFDSSRDRNRPFSFKIGVGQVIKGWDEGVGDMKVGERRTLIIPPELGYGARGAGGVIPPNATLIFDVELLKIG 179 The following BLAST results are available for this feature:
BLAST of EWM25144.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|