rna5537, rna5537 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5537
Unique Name	rna5537
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1686
Alignment location	CM002466.1:235628..237189 +

Link to JBrowse

Properties


Property Name	Value
Product	peptidylprolyl isomerase
Orig transcript id	gnl\|cribi\|Naga_100016g72.2953.mrna
Orig protein id	gnl\|cribi\|Naga_100016g72.2953
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:235628..237189 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100016g72	gene5350	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5537	rna5537-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25144.1	cds5523	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:235628..237189+
coding sequence from alignment at CM002466.1:235628..237189+

mRNA sequence

>rna5537 ID=rna5537|Name=rna5537|organism=Nannochloropsis gaditana|type=mRNA|length=1686bp
CATGCACAGCTTTCCCTGGATTTCCGGAATATCATGCGACGTGGAGTATT
AAGCTGCATCCGCACTCACCATGCGTCATTTCTATTTCTTCTGCTGTCGC
TGCTTGCCGCTGGATGCGCTGTGGAATTTCGTCAACCTCCTCCAAGAACT
GCAACGCATGGAGACACTCCAAGTTGCTCTATAGCCGCGTACGATGAGGT
GGTTGCCAAGGTCATGGCAGAATATTGTGCTGCTGCTTACTCCTGTGGCT
CTCTCGAGGGCTGCGGAAACTGGTCCTGCAACTCTTGTCAGCTGCATAGT
CACGCCGAAGCATTCCGTTTTTCCGGCGGAGTGAACGGAACAGGTGTATC
TGGCTTGGTCGTGCACGACTCTGACATCAATAAGATCATACTCGTCTTTG
CTGGTACGCAGGCAGGGGACCTGGCGGCCTGGGCGAACAACTTGAATGGG
GAATTAACGGGCTACACACCCTGTGCCGATGCTGGTTGCCAAGTGCACAC
CGGCTTCTACGCCGACTATCAGGCTCTCGCCCCCGCCTTTTTAGAACCCT
TGAGCTATGCCCTGGCTCGCTTTCCTCGTGCCAGCCTCTGGGTCACTGGA
CACTCGTTAGGCGGAGCACTGGCGATGCTAGCAGTTGCTGATCTCAAAGG
CAATCATGCCGTGCGAATAGAAGCCCTCTATACATATGGACAACCTCGTG
TGGGCAATCAAGCCTTCGCCATGAACTTCATCGGCCTAACTAGACGTCAA
GATGCTCCTACGAGCTACTACCGCGTTGTGCATGCCCAGGACCCTATTCC
TCATGTCCCTCCGATACTGCTCGGCTTCTGGCATGCCCCGACGGAGGTTT
TTTATAACGAGGAGCAAACGAAGTATGAGGTATGGAAGTAGGAGGGGTCG
GTTTGGGATAAGAATCAACGCAGCTTTGTCCTGACGGGCGTGGGTGAGAT
GCGTTCCGTCCTTCTCCCGGCATGTGCGCAGGGGGCATACAGAGGTGCAT
CAACTGCGCTCCGTCGAGTGCCATTTTTTTATTTTTTTTTAAATGAAACC
CCAAGATCGTACCGTTTTGCCGATCCGCTTCCTCTTCCCCTCCCCGCACT
TAGCTTTGTGACGATACTGGCGAAGACTTTTACTGCTCCAATTCCTTCTT
GTTCGCCTTCAAGGTCGACGATCATTTTAATTACATGGGCGTTCCACTTT
GAAGGATTATGAAAAAATACAAATCGGAAAAGGTGCTCATTGTACATAGT
TGAGGTCGCCTGGCGCACGTCTTCTTTTGCAGAGAAGGATCGCAGCAAAG
GTCGACACAGAAGCTGTTGTAAAAAGTAAGAATGGATCAATTATTACTAA
AATTGGCCCCAACGTAGGATTTTTCATATTGTAAAGAGGGGAGGGTAGAC
CATTTTGGCTTGAATCGCGCCTTTTGCCACTCTAGGGCTTCTAGGCAAGC
AGCAATTGACAGAAGAAGGAGTTCGATATGGAAGGAAGCGTCTCATTGTA
AGCAGTAAGCATAGTGCTTGCATTTCCGACATTTTCCCAACGTGGGCGAC
GATGTCACATTGATTGTTCTGTTATCTATTTTCTGCTTCCCGTCGCTAGG
CTAAACTCTCATTTTCAGCCTAAACAGTTTGTATAAAACCTCCTTCATGC
AAAAAGAAACACGTGACACAACTCATAGCACAAGCA

protein sequence of rna5537

>rna5537-protein ID=rna5537-protein|Name=rna5537|organism=Nannochloropsis gaditana|type=polypeptide|length=244bp
MSICSAPCSLHAPERYNLPVCLAVLPRLFTCKQLHLQMHLPTFLVLIASL
TSTSSFMMTPLSRHAAGHLVKAAVACRPGISQMAVRRGSPQMKELINRQQ
HLRRATLGSLLGGFALFASGGGVARAEDGFETTSSGLKYKILKEGTGAIP
AAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEAL
LQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMELKSIG

mRNA from alignment at CM002466.1:235628..237189+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5537 ID=rna5537|Name=rna5537|organism=Nannochloropsis gaditana|type=mRNA|length=1562bp|location=Sequence derived from alignment at CM002466.1:235628..237189+ (Nannochloropsis gaditana)
GACCCTTTCTGGAGGCTTCAATTAACTCTTCACGGTCTCAGTAGATGAGC
ATTTGCTCCGCGCCGTGCAGTTTGCATGCACCTGAACGGTACAACCTCCC
CGTCTGCTTAGCagttctccctcgccttttcaCCTGCAAACAACTACACT
TACAGATGCATCTACCCACTTTCTTGGTTTTAATTGCTTCTTTAACGTCG
ACATCCAGCTTCATGATGACCCCGCTCAGTCGCCATGCGGCGGGTCACCT
GGTTAAGGCTGCTGTTGCCTGCCGCCCCGGGATCTCGCAGGTGAAGATAC
GTTATTAGTTTGTCATCGTGCGATACAACCAACGGAACTAGATGTCAAAG
GTCGCGACATCCTAAATTTCAAAGAGCACGATTCCTTCTAACACGTATAT
ACGGATTAGATGGCCGTCAGGCGTGGCAGCCCGCAAATGAAGGAGCTGAT
CAACCGTCAGCAGCACCTGCGCAGAGCTACCCTCGGTAGCTTGCTGGGGG
GGTTTGCGCTTTTCGCATCAGGTGGTGGTGTCGCGCGTGCAGAGGATGGC
TTTGAGACCACATCCTCCGGATTAAAATATAAGATtctgaaggagggaac
aggAGCAATCCCTGCGGCAGGCaagttggtggaggagggaaggtttTCGT
TGTCGTGTCGAGGCACTGACTGGGTATCGGCATGGAAATCGAGAGTCCAC
ATTGTGTGCGGGTCTGCATTTAGGTGAAGAAAAAATCTTGATGAGCCACT
TTAGAATTAGCCAATTCAAGCGGTGATACTTTTCCCCGAACCTTTGACAG
GCCAATCCGTGAAGGTGCACTACACAGGATGGCTCGACGACTTCGAGAGC
CCCAAGAAGTTTGACTCTTCCTACGACCGCGGAAagcctctctccttccg
tgCAGGTGTCGGACAAGTGATCGCAGGTTGGGATGAAGCATTACTGCAGA
TGAAAATCGGCGAGAAGCGGAACGTGATCATCCCCCCCGGGCTGGGGtat
ggagcgaggggagcagggggcGTGATCCCGCCCAACGCTACCTTGTACTT
CACCATGGAGCTCAAAAGCATCGGTTAGAATAGTTCTTTTGGGTTTTGGG
GTAAGTAAGAGGCGTCCGGGCTTGAAATGAGGTTGAAAGGGGATAGAGAG
CACAGAAACACAGGCAGAGTAGCAGCGCTGGGCTGccgaggagaggagat
gTCGAGGTTCAACTGGACAAAGACACACGAGGGAAGCGGGATAAGAACAA
TGGCCCATGCCGTGAAGGCAAATCGCTCGAGACGTTATTTTGAACCTGCA
TGAATCAAGATGGTGTCGGCTAGTAAGACCTCGCTTCCCCTGGCTTCCAC
TTTATTGAAGTAATCATGTCTTGTGTTTTAGAGCTCCCATGCATTTTTGA
ACTCCCACGCAAGCTGTCCACCCTTCTAAGAAATCAAGCGTCAATTTTCA
TTTGTTGTCCCGGCTGTTTCCTAGAGCCCCAACCGGATATTTGGCAGCGG
GGATACTAGGAGGGCCCTGCCATCCCCACAGCCGACGTCGCCTCCGCCCT
GCAAATCCCTCC

Coding sequence (CDS) from alignment at CM002466.1:235628..237189+

>rna5537 ID=rna5537|Name=rna5537|organism=Nannochloropsis gaditana|type=CDS|length=2205bp|location=Sequence derived from alignment at CM002466.1:235628..237189+ (Nannochloropsis gaditana)
ATGAGCATTTGCTCCGCGCCGTGCAGTTTGCATGCACCTGAACGGTACAA
CCTCCCCGTCTGCTTAGCagttctccctcgccttttcaCCTGCAAACAAC
TACACTTACAGATGCATCTACCCACTTTCTTGGTTTTAATTGCTTCTTTA
ACGTCGACATCCAGCTTCATGATGACCCCGCTCAGTCGCCATGCGGCGGG
TCACCTGGTTAAGGCTGCTGTTGCCTGCCGCCCCGGGATCTCGCAGATGG
CCGTCAGGCGTGGCAGCCCGCAAATGAAGGAGCTGATCAACCGTCAGCAG
CACCTGCGCAGAGCTACCCTCGGTAGCTTGCTGGGGGGGTTTGCGCTTTT
CGCATCAGGTGGTGGTGTCGCGCGTGCAGAGGATGGCTTTGAGACCACAT
CCTCCGGATTAAAATATAAGATtctgaaggagggaacaggAGCAATCCCT
GCGGCAGGCCAATCCGTGAAGGTGCACTACACAGGATGGCTCGACGACTT
CGAGAGCCCCAAGAAGTTTGACTCTTCCTACGACCGCGGAAagcctctct
ccttccgtgCAGGTGTCGGACAAGTGATCGCAGGTTGGGATGAAGCATTA
CTGCAGATGAAAATCGGCGAGAAGCGGAACGTGATCATCCCCCCCGGGCT
GGGGtatggagcgaggggagcagggggcGTGATCCCGCCCAACGCTACCT
TGTACTTCACCATGGAGCTCAAAAGCATCGGTTAGATGAGCATTTGCTCC
GCGCCGTGCAGTTTGCATGCACCTGAACGGTACAACCTCCCCGTCTGCTT
AGCagttctccctcgccttttcaCCTGCAAACAACTACACTTACAGATGC
ATCTACCCACTTTCTTGGTTTTAATTGCTTCTTTAACGTCGACATCCAGC
TTCATGATGACCCCGCTCAGTCGCCATGCGGCGGGTCACCTGGTTAAGGC
TGCTGTTGCCTGCCGCCCCGGGATCTCGCAGATGGCCGTCAGGCGTGGCA
GCCCGCAAATGAAGGAGCTGATCAACCGTCAGCAGCACCTGCGCAGAGCT
ACCCTCGGTAGCTTGCTGGGGGGGTTTGCGCTTTTCGCATCAGGTGGTGG
TGTCGCGCGTGCAGAGGATGGCTTTGAGACCACATCCTCCGGATTAAAAT
ATAAGATtctgaaggagggaacaggAGCAATCCCTGCGGCAGGCCAATCC
GTGAAGGTGCACTACACAGGATGGCTCGACGACTTCGAGAGCCCCAAGAA
GTTTGACTCTTCCTACGACCGCGGAAagcctctctccttccgtgCAGGTG
TCGGACAAGTGATCGCAGGTTGGGATGAAGCATTACTGCAGATGAAAATC
GGCGAGAAGCGGAACGTGATCATCCCCCCCGGGCTGGGGtatggagcgag
gggagcagggggcGTGATCCCGCCCAACGCTACCTTGTACTTCACCATGG
AGCTCAAAAGCATCGGTTAGATGAGCATTTGCTCCGCGCCGTGCAGTTTG
CATGCACCTGAACGGTACAACCTCCCCGTCTGCTTAGCagttctccctcg
ccttttcaCCTGCAAACAACTACACTTACAGATGCATCTACCCACTTTCT
TGGTTTTAATTGCTTCTTTAACGTCGACATCCAGCTTCATGATGACCCCG
CTCAGTCGCCATGCGGCGGGTCACCTGGTTAAGGCTGCTGTTGCCTGCCG
CCCCGGGATCTCGCAGATGGCCGTCAGGCGTGGCAGCCCGCAAATGAAGG
AGCTGATCAACCGTCAGCAGCACCTGCGCAGAGCTACCCTCGGTAGCTTG
CTGGGGGGGTTTGCGCTTTTCGCATCAGGTGGTGGTGTCGCGCGTGCAGA
GGATGGCTTTGAGACCACATCCTCCGGATTAAAATATAAGATtctgaagg
agggaacaggAGCAATCCCTGCGGCAGGCCAATCCGTGAAGGTGCACTAC
ACAGGATGGCTCGACGACTTCGAGAGCCCCAAGAAGTTTGACTCTTCCTA
CGACCGCGGAAagcctctctccttccgtgCAGGTGTCGGACAAGTGATCG
CAGGTTGGGATGAAGCATTACTGCAGATGAAAATCGGCGAGAAGCGGAAC
GTGATCATCCCCCCCGGGCTGGGGtatggagcgaggggagcagggggcGT
GATCCCGCCCAACGCTACCTTGTACTTCACCATGGAGCTCAAAAGCATCG
GTTAG

Synonyms

Publications