rna5524, rna5524 (mRNA) Nannochloropsis gaditana

Overview
Namerna5524
Unique Namerna5524
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1656
Alignment locationCM002466.1:199197..199906 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100016g86.2925.mrna
Orig protein idgnl|cribi|Naga_100016g86.2925
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:199197..199906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100016g86gene5337Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5524rna5524-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25116.1cds5510Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5524 ID=rna5524|Name=rna5524|organism=Nannochloropsis gaditana|type=mRNA|length=1656bp
CCAACTCCCTCCCTCTAGGGGAGAGAACCTCAGGGTGCTGGTCAAGCACT
TGGTCGAGAGACACAAGGAGACGCTGGAGGCGTTGGGGAAGGATTTTCCC
ACCTTCCGCGGGCTTCTGGAACGCGCAGAGAGGAACAGGGAGTTCGACGA
GCAGGCCCTGGCAGTCGCCTCAGGTTCCGGCGTGGAGGGCGAGGAGGGCG
GGGACGGGAAGGGAAAAGGGAGGAAGCGAAGGGCGGGGGGGGGAGAGGAG
GAGGACGAGGCCTACTTCAACGAGGACGAGGAGGAAGAAGAGGACGGGGG
GGGGGAGAGGACAGGGCTCCCGACCGCCTCGGGAGGGCGCCCCGCGGATG
CCCTCTCAGCCTGTGACGTCTCCCAGGACGGAGAAGACGCTTTTCCCGGC
GCCTCAACCTCTGCGCCCTCTCCCGCCCCGTCCCTGCCGCCCTTGCGCCT
GGTCAATTACGACGACGATGAGGAGGAGGACGTGGATCCCTTCTGGCTGG
GGAAAGGAGCCGCGGCGGTCCGGAAGGGGCAGCAGGGGCTCCAGGAGGAG
AAGCCAGGACTTGGCCGGGGGAATGGGGGAGGGGGAGGGGGAGCCTTGGC
CCGCTTCGGAGAGCGAAAAATCGTGTTTAACGTGCTGTCGACCTCGTTGG
GAAAGCGGGTCGAGGAGGGAGAGGAGGAGGAGGAGGAGGAGAGGGAGGAG
GAAGAGGGAGAGAGCCGGCGAAGGAAAGCGGCGGCATCCGTGATCGGCGA
CATCTTCGAGGACCCTTCGCTGATGGGCGGAGGACAAGGCGAGGCAGGGC
GGGCGTCCGGGACGGGAGCAGGAACAGAGGTGGGGCGGGACGGGCAGGGT
CAGGAGGAGCACGGGGAGGAGCCGGCCTCTGAGGAGGGCGACGAAGCCGG
CAGTGGCGCGATCAAAAAGCTGAAGAGCGGCGAAGGGGACTCTCCCGGCG
CTTCTCGCTCCTCGTCCGTCCCCGCTCCCCCCTCCCCGTCTTCCACGTCC
TCCTGACCGTGATCTCGGCATCCGACGCCTTCGGCCTGGGAGCATCCCCA
GATTTTCCACGGAAGGCGGCACCGCACCCTTTTCCTCCTCTCCTTCCCCC
TCGCATACACCTCTTGTTCCCACGAACGTGCTGGCGCCCTGATGGATGGT
GGTCTCCGCGAGCCGAAAGGCATACTGCTTTGATTTGTCTCATTCAATCA
GATCGTGGCAGCGTCGCTGACGTGGAAAATGAGGCTGACACATAGAGGTA
TGAGCCCGGAGAACTCGGTCGTGAATAGGCTGACGCAGGAGAGAAACGTG
CTGTTCACCGGCACCGCGTTTCCAAGCGCCTGGCCGGGAGGTGTCGAAGT
AGAGTGGAGCGCACGCCACGACAGAGGCGGCGGGGGAGGACTAGGGGGCA
GAGAGGGGGAAGAGGGCGCATCCATATAAAGCGGGGAAGTCTGTTGTCGC
CAACCTAGACAGAGGAGGTGGACAGACGGTAAAGGCGGGAGTAGCTGCCA
TATTTGGCATTAACAATGAGGAAAGACTAAGAGCTTGTGTGTGTGTGTGC
CATCCTCTTCAATTGTTTGTTTCTTTACACGTCGTTATTTGAACACTTTT
GTGGAACCATAGGCATGTGCTGGCCCGATTTAATCCGTGGTCCATTTATA
AATATC
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protein sequence of rna5524

>rna5524-protein ID=rna5524-protein|Name=rna5524|organism=Nannochloropsis gaditana|type=polypeptide|length=84bp
MDAAKSRSRGSRPIFVSSCFWSVTREFYRYLLSSPGPSSTLHSAKRPSCI
CNRRVHLPAPQAASAALRSLEGRLTCLVTRLVRR
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mRNA from alignment at CM002466.1:199197..199906-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5524 ID=rna5524|Name=rna5524|organism=Nannochloropsis gaditana|type=mRNA|length=710bp|location=Sequence derived from alignment at CM002466.1:199197..199906- (Nannochloropsis gaditana)
ATGGACGCGTGCTGGCAACATTTGTGTGACATGCGCAGGATGCTGCGGCA
GAAATCCAACTCCATAGGAGGGGCGAGAGAGAAGTCAAGAGCACGCGCGG
GAGGGGATGAGGGCGTGCAAGTTGTCGGGACGCTAGCACCCTCATTGACT
TGACTATACCCTGTCTACCACTCACTCATGTCCAAATCCTTTCAAACAGA
GCAAAGTCAAGGAGCAGGGGGAGCAGGCCTATCTTTGTCTCCTCGTGTTT
TTGGAGCGTGACTCGAGAGTTCTACCGATACTTGCTCTCAAGCCCTGGCC
CGTCCTCAACATTGCATTCAGCAAAGCGGTAAGCAGGGAAGCAATAGCGC
GAGTCGACAGCTCATAATCATTCAATATTGAGGGTGGGGGAGCGGGCGCG
AGCAGACGGCGAAAATGGGAAAGCAACAAATAGGAAGATAACTTTTTGAG
GGGTCAGAGGGCACATTATACGGACCCGCCCGCCGCCCGCGGCAAATCGG
TCTTGTGATATGAAGGGAGGGATTGAGGGCAATGCTCCAGTGTTGTTCAT
CGGGAGTGTATACTTACTCGACCACATTCTTCTCTTTTGCAGACCATCAT
GTATCTGTAACCGGAGAGTTCATCTTCCCGCACCTCAAGCAGCATCTGCA
GCTCTGAGATCCTTGGAGGGACGCCTGACGTGCCTTGTGACGCGTCTTGT
GAGACGATGA
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Coding sequence (CDS) from alignment at CM002466.1:199197..199906-

>rna5524 ID=rna5524|Name=rna5524|organism=Nannochloropsis gaditana|type=CDS|length=765bp|location=Sequence derived from alignment at CM002466.1:199197..199906- (Nannochloropsis gaditana)
ACCATCATGTATCTGTAACCGGAGAGTTCATCTTCCCGCACCTCAAGCAG
CATCTGCAGCTCTGAGATCCTTGGAGGGACGCCTGACGTGCCTTGTGACG
CGTCTTGTGAGACGATGAAGCAAAGTCAAGGAGCAGGGGGAGCAGGCCTA
TCTTTGTCTCCTCGTGTTTTTGGAGCGTGACTCGAGAGTTCTACCGATAC
TTGCTCTCAAGCCCTGGCCCGTCCTCAACATTGCATTCAGCAAAGCGATG
GACGCACCATCATGTATCTGTAACCGGAGAGTTCATCTTCCCGCACCTCA
AGCAGCATCTGCAGCTCTGAGATCCTTGGAGGGACGCCTGACGTGCCTTG
TGACGCGTCTTGTGAGACGATGAAGCAAAGTCAAGGAGCAGGGGGAGCAG
GCCTATCTTTGTCTCCTCGTGTTTTTGGAGCGTGACTCGAGAGTTCTACC
GATACTTGCTCTCAAGCCCTGGCCCGTCCTCAACATTGCATTCAGCAAAG
CGATGGACGCACCATCATGTATCTGTAACCGGAGAGTTCATCTTCCCGCA
CCTCAAGCAGCATCTGCAGCTCTGAGATCCTTGGAGGGACGCCTGACGTG
CCTTGTGACGCGTCTTGTGAGACGATGAAGCAAAGTCAAGGAGCAGGGGG
AGCAGGCCTATCTTTGTCTCCTCGTGTTTTTGGAGCGTGACTCGAGAGTT
CTACCGATACTTGCTCTCAAGCCCTGGCCCGTCCTCAACATTGCATTCAG
CAAAGCGATGGACGC
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Synonyms
Publications