EWM25116.1, cds5510 (CDS) Nannochloropsis gaditana

Overview
NameEWM25116.1
Unique Namecds5510
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:199899..199906 -
Alignment locationCM002466.1:199579..199707 -
Alignment locationCM002466.1:199197..199314 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25116.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100016g86.2925.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:199899..199906 -
CM002466.1supercontigCM002466.1:199579..199707 -
CM002466.1supercontigCM002466.1:199197..199314 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM25116.1 vs. NCBI_GenBank
Match: gi|585106754|gb|EWM25116.1| (hypothetical protein Naga_100016g86 [Nannochloropsis gaditana])

HSP 1 Score: 167.548 bits (423), Expect = 1.386e-52
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 
Query:    1 MDAAKSRSRGSRPIFVSSCFWSVTREFYRYLLSSPGPSSTLHSAKRPSCICNRRVHLPAPQAASAALRSLEGRLTCLVTRLVRR 84
            MDAAKSRSRGSRPIFVSSCFWSVTREFYRYLLSSPGPSSTLHSAKRPSCICNRRVHLPAPQAASAALRSLEGRLTCLVTRLVRR
Sbjct:    1 MDAAKSRSRGSRPIFVSSCFWSVTREFYRYLLSSPGPSSTLHSAKRPSCICNRRVHLPAPQAASAALRSLEGRLTCLVTRLVRR 84
The following BLAST results are available for this feature:
BLAST of EWM25116.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585106754|gb|EWM25116.1|1.386e-52100.00hypothetical protein Naga_100016g86 [Nannochlorops... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5524rna5524Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications