EWM25204.1, cds5464 (CDS) Nannochloropsis gaditana

Overview
NameEWM25204.1
Unique Namecds5464
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:52065..52376 -
Alignment locationCM002466.1:51764..51940 -
Alignment locationCM002466.1:51387..51581 -

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Properties
Property NameValue
Protein idEWM25204.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100311g4.1354.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:52065..52376 -
CM002466.1supercontigCM002466.1:51764..51940 -
CM002466.1supercontigCM002466.1:51387..51581 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM25204.1 vs. NCBI_GenBank
Match: gi|553192211|ref|XP_005855533.1| (hypothetical protein NGA_0619000 [Nannochloropsis gaditana CCMP526] >gi|422293527|gb|EKU20827.1| hypothetical protein NGA_0619000 [Nannochloropsis gaditana CCMP526] >gi|585106881|gb|EWM25204.1| hypothetical protein Naga_100311g4 [Nannochloropsis gaditana] >gi|585106882|gb|EWM25205.1| hypothetical protein Naga_100311g4 [Nannochloropsis gaditana])

HSP 1 Score: 470.7 bits (1210), Expect = 6.119e-168
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0 
Query:    1 MGIRTIYLLQCVFLLVLPSMGGKAVLRGPESVVADSTTNLEADPPTIISYSPAPRSYLRTVGSPADAVKMALAAQAAAEKRMVDGAHCKIQWKWTVSKDQQNSTDGSLGVIMVLDEAGRQSDEATTPAFREWTPGATFEDEMEFANCPHAKIQGFRIVFYPYQVPGAGPPEDDDPPTISFSHVEALEESPVLHESWRWTEGAEDREIGKKGPFVASMERYTVAWITD 227
            MGIRTIYLLQCVFLLVLPSMGGKAVLRGPESVVADSTTNLEADPPTIISYSPAPRSYLRTVGSPADAVKMALAAQAAAEKRMVDGAHCKIQWKWTVSKDQQNSTDGSLGVIMVLDEAGRQSDEATTPAFREWTPGATFEDEMEFANCPHAKIQGFRIVFYPYQVPGAGPPEDDDPPTISFSHVEALEESPVLHESWRWTEGAEDREIGKKGPFVASMERYTVAWITD
Sbjct:    1 MGIRTIYLLQCVFLLVLPSMGGKAVLRGPESVVADSTTNLEADPPTIISYSPAPRSYLRTVGSPADAVKMALAAQAAAEKRMVDGAHCKIQWKWTVSKDQQNSTDGSLGVIMVLDEAGRQSDEATTPAFREWTPGATFEDEMEFANCPHAKIQGFRIVFYPYQVPGAGPPEDDDPPTISFSHVEALEESPVLHESWRWTEGAEDREIGKKGPFVASMERYTVAWITD 227
The following BLAST results are available for this feature:
BLAST of EWM25204.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|553192211|ref|XP_005855533.1|6.119e-168100.00hypothetical protein NGA_0619000 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5478rna5478Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications