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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100311g4.1354.mrna |
| Orig protein id | gnl|cribi|Naga_100311g4.1354 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:49862..52636 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5478 ID=rna5478|Name=rna5478|organism=Nannochloropsis gaditana|type=mRNA|length=2126bp
GATGGACAACTCAAGAAGACGGCTCGAAAGCAGGGGCACATTCAATTACA
TAGCGCGCTTTTCACTTGGCTGACGTGTGAGAGATAGATTGATTTGTCTA
GTGTCTTGTAATACCCTTGTAATCGCCCGTTCTCTTTTTTTAAAGAAACC
TTCTGCTGGCATATCATTCGAAGGATCTGACACACCTGTGCTGCATCATG
CCACTTCCATTACACCTACATGAGCAGGTGCTTGGTTCCTAATATCGACG
GTAAATCACAATGGGAATTCGGACAATCTACCTTTTGCAATGCGTTTTCC
TTCTTGTCCTCCCCTCGATGGGAGGGAAAGCAGTCTTACGTGGTCCAGAG
AGCGTGGTTGCTGACAGCACCACAAACTTGGAAGCGGACCCGCCTACCAT
CATTTCCTATTCCCCAGCCCCACGTTCGTATTTGAGGACAGTTGGATCCC
CTGCTGACGCTGTGAAAATGGCGTTGGCGGCTCAAGCGGCCGCGGAGAAG
CGAATGGTCGATGGGGCCCATTGCAAAATCCAATGGAAATGGACTGTGTC
AAAAGATCAACAGAACTCAACGGATGGGAGCCTGGGTGTGATTATGGTCC
TCGACGAAGCAGGGCGACAAAGCGACGAAGCAACCACTCCTGCTTTCCGT
GAATGGACACCTGGCGCGACCTTTGAGGACGAGATGGAGTTTGCCAACTG
CCCGCATGCCAAAATCCAAGGCTTCCGTATTGTCTTTTATCCGTATCAGG
TCCCCGGTGCAGGTCCTCCAGAGGACGACGACCCACCCACCATTTCCTTT
TCCCACGTGGAAGCGCTGGAGGAATCACCTGTCCTCCACGAGAGCTGGCG
CTGGACGGAAGGAGCAGAAGATCGAGAGATAGGAAAGAAAGGGCCGTTCG
TGGCGTCGATGGAGCGCTATACGGTGGCTTGGATCACAGATTAAAATGGA
GCAGCCTGCCTTGGAGGAGAAAAGAAGGAGAAAGCCTCAAAAGCGTGAAA
ATTAGCTCAGGGAAAGTGAGGAAAAGAGAAGGGAGGGAGGAAAAACTTGA
AGGCGTGTAAGTATGTACATGACAGAGGGTGGAGGACAACAGCAACAACA
GCGACAACAACAACAACAACAACAACAACAACCAAAGCATGAGGCGTGAA
ATTATTGTTGCAGCCATTCTCTGTGTTTCTTTTTGGACGCAATGGGATGG
TAGTCATCGGAACAGGGGGAAATACGAGTACCATCAGAGACAACTTCGGC
TCTGTGCATTTGCCCATTTCTTATTGTAAGAAGAAATGTTAGACCACAAT
TAAGGGCATCAAAATGCATTTACTTCTGGGAAAGAGAGGAGTAAGACACA
AAGTATCGTGTTTTTGGGAGCATAGAACTTTTTGGGGGGACACAACGGAC
TCCCGACACTCTCAGGCTCAAGATAACCAGGTCTTTAAAAAAGCCATATA
ACTCATTAAACCTCGATTTTATCAGTAAGTCAATCAAAAAAATGTAAGAT
AAGAAATGGGGAACAAAATTTATTTTGCAAGAAGAGAAGAAGGAAAAAAG
AGACCCTCACAAGCAGAGAGGGCAGGGACAGGTACTACTCGCGTCACGCA
GACCCCAGAAAGCATCACAAACGAAAGTGATCCAAACATAAGAAAATGAA
TAGCATGGCCAATAACCGGTAGTTTGGCCTGTGTATCCGTCGGCTTTTGT
ATTGTGATGGTCGTGAAAATATTCTCGGAGATGAGGGGAAGTAGGGCAGT
ACTCTAATGCTTCAAAGCACCATGAGAAAAAAGAATTTAAGCCCACGCTG
CCCGGTCCTCTTTCAGCCACGACACTTATCCCTTAATGAGAAGCATGTCT
ACAAACTCTCCTTAGCAATATATTGGTTTGTGTCAAGAGAATACTTATCG
GTCAGTACCCCTCCTACACTCGTAGTACTTGACGTTCGGACATACGTTTG
GAGACTGAAGTATCGCGGCCTTTCAAGAAATTGGCACGCTTCAGGCTTCT
GAAGCAGAGCACAGGGAGATGGACGCACCTCGTGTTGCTTCACTTGAAAT
CTAAGGAGTACGGTTGAACCTTTCTCTCCCAAGGACTTCCCACCTCGTAC
AATGTCCCTCCTCCCTCCCGCCCTCC back to topprotein sequence of rna5478 >rna5478-protein ID=rna5478-protein|Name=rna5478|organism=Nannochloropsis gaditana|type=polypeptide|length=227bp
MGIRTIYLLQCVFLLVLPSMGGKAVLRGPESVVADSTTNLEADPPTIISY
SPAPRSYLRTVGSPADAVKMALAAQAAAEKRMVDGAHCKIQWKWTVSKDQ
QNSTDGSLGVIMVLDEAGRQSDEATTPAFREWTPGATFEDEMEFANCPHA
KIQGFRIVFYPYQVPGAGPPEDDDPPTISFSHVEALEESPVLHESWRWTE
GAEDREIGKKGPFVASMERYTVAWITD back to topmRNA from alignment at CM002466.1:49862..52636- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5478 ID=rna5478|Name=rna5478|organism=Nannochloropsis gaditana|type=mRNA|length=2775bp|location=Sequence derived from alignment at CM002466.1:49862..52636- (Nannochloropsis gaditana)
GATGGACAACTCAAGAAGACGGCTCGAAAGCAGGGGCACATTCAATTACA
TAGCGCGCTTTTCACTTGGCTGACGTGTGAGAGATAGATTGATTTGTCTA
GTGTCTTGTAATACCCTTGTAATCGCCCGTTCTCTTTTTTTAAAGAAACC
TTCTGCTGGCATATCATTCGAAGGATCTGACACACCTGTGCTGCATCATG
CCACTTCCATTACACCTACATGAGCAGGTGCTTGGTTCCTAATATCGACG
GTAAATCACAATGGGAATTCGGACAATCTACCTTTTGCAATGCGTTTTCC
TTCTTGTCCTCCCCTCGATGGGAGGGAAAGCAGTCTTACGTGGTCCAGAG
AGCGTGGTTGCTGACAGCACCACAAACTTGGAAGCGGACCCGCCTACCAT
CATTTCCTATTCCCCAGCCCCACGTTCGTATTTGAGGACAGTTGGATCCC
CTGCTGACGCTGTGAAAATGGCGTTGGCGGCTCAAGCGGCCGCGGAGAAG
CGAATGGTCGATGGGGCCCATTGCAAAATCCAATGGAAATGGACTGTGTC
AAAAGATCAACAGAACTCAACGGTAAGCTCTCTGTCAGATACGAGATGCA
AGCCATCTGAAATTGTTAAGATGTTTATGAACTCAAACTGTGGCTGTCTA
TTTTTTAACGCTGCTCTTCTCTCCCTCCCTCCCACCTGTCTGCCAGGATG
GGAGCCTGGGTGTGATTATGGTCCTCGACGAAGCAGGGCGACAAAGCGAC
GAAGCAACCACTCCTGCTTTCCGTGAATGGACACCTGGCGCGACCTTTGA
GGACGAGATGGAGTTTGCCAACTGCCCGCATGCCAAAATCCAAGGCTTCC
GTATTGTCTTTTATCCGTATCAGGTATGGAGGCGGGGGACACCGTGTGGG
GAGAAGTACGAATGGCGGATGCATGCGGGATCTTCGATGGGAGACCCGGC
TTGATTCCCTGCTCATTCCTGTCCCACGGTATTTCTCCAAGCAAAACCCA
CCTGGGCTCTCTTCTCATTTCCGTTTCTTTTCCCTCCATTCGTTCGCGTT
GCCAGGTCCCCGGTGCAGGTCCTCCAGAGGACGACGACCCACCCACCATT
TCCTTTTCCCACGTGGAAGCGCTGGAGGAATCACCTGTCCTCCACGAGAG
CTGGCGCTGGACGGAAGGAGCAGAAGATCGAGAGATAGGAAAGAAAGGGC
CGTTCGTGGCGTCGATGGAGCGCTATACGGTGGCTTGGATCACAGATTAA
AATGGAGCAGCCTGCCTTGGAGGAGAAAAGAAGGAGAAAGCCTCAAAAGC
GTGAAAATTAGCTCAGGGAAAGTGAGGAAAAGAGAAGGGAGGGAGGAAAA
ACTTGAAGGCGTGTAAGTATGTACATGACAGAGGGTGGAGGACAACAGCA
ACAACAGCGACAACAACAACAACAACAACAACAACAACCAAAGCATGAGG
CGTGAAATTATTGTTGCAGCCATTCTCTGTGTTTCTTTTTGGACGCAATG
GGATGGTAGTCATCGGAACAGGGGGAAATACGAGTACCATCAGAGACAAC
TTCGGCTCTGTGCATTTGCCCATTTCTTATTGTAAGAAGAAATGTTAGAC
CACAATTAAGGGCATCAAAATGCATTTACTTCTGGGAAAGAGAGGAGTAA
GACACAAAGTATCGTGTTTTTGGGAGCATAGAACTTTTTGGGGGGACACA
ACGGACTCCCGACACTCTCAGGCTCAAGATAACCAGGTCTTTAAAAAAGC
CATATAACTCATTAAACCTCGATTTTATCAGTAAGTCAATCAAAAAAATG
TAAGATAAGAAATGGGGAACAAAATTTATTTTGCAAGAAGAGAAGAAGGA
AAAAAGAGACCCTCACAAGCAGAGAGGGCAGGGACAGGTACTACTCGCGT
CACGCAGACCCCAGAAAGCATCACAAACGAAAGTGATCCAAACATAAGAA
AATGAATAGCATGGCCAATAACCGGTAGTTTGGCCTGTGTATCCGTCGGC
TTTTGTATTGTGATGGTCGTGAAAATATTCTCGGAGATGAGGGGAAGTAG
GGCAGTACTCTAATGCTTCAAAGCACCATGAGAAAAAAGAATTTAAGCCC
ACGCTGCCCGGTCCTCTTTCAGCCACGACACTTATCCCTTAATGAGAAGC
ATGTCTACAAACTCTCCTTAGCAATATATTGGTTTGTGTCAAGAGAATAC
TTATCGGTCAGTACCCCTCCTACACTCGTAGTACTTGACGTTCGGACATA
CGTTTGGAGACTGAAGTATCGCGGCCTTTCAAGAAATTGGCACGCTTCAG
GTAAGAAACAAATCGGTAAGAGGTGCTGAGACACATGCTTCTTAATGTGT
GTTGTCTGTAAGCACATATGATGCTCTGGAAGTGAGACTATTGCCCTATT
TTCTCGAACCTACGGGCACGAACGCTGCGCAAGGGTGTGTGTGTATTTAG
CACGGGATCATGGTATGAGGCTTTTGGACTGACATTGGCGTCTTTGCGTC
CATAGGAGAAGCAAGACATGCCCTAGCAGCAGCCACAACCCACTTTATTT
CCTCCTTTCCTTTTCTCCCTTCCTGTCTGGGACATCCTTGCACGCACCAC
ATGTTATTGTAAAGTCTTCTCATTATCCTTGTTGCACAGACAGGCTTCTG
AAGCAGAGCACAGGGAGATGGACGCACCTCGTGTTGCTTCACTTGAAATC
TAAGGAGTACGGTTGAACCTTTCTCTCCCAAGGACTTCCCACCTCGTACA
ATGTCCCTCCTCCCTCCCGCCCTCC back to topCoding sequence (CDS) from alignment at CM002466.1:49862..52636- >rna5478 ID=rna5478|Name=rna5478|organism=Nannochloropsis gaditana|type=CDS|length=2052bp|location=Sequence derived from alignment at CM002466.1:49862..52636- (Nannochloropsis gaditana)
GTCCCCGGTGCAGGTCCTCCAGAGGACGACGACCCACCCACCATTTCCTT
TTCCCACGTGGAAGCGCTGGAGGAATCACCTGTCCTCCACGAGAGCTGGC
GCTGGACGGAAGGAGCAGAAGATCGAGAGATAGGAAAGAAAGGGCCGTTC
GTGGCGTCGATGGAGCGCTATACGGTGGCTTGGATCACAGATTAAGATGG
GAGCCTGGGTGTGATTATGGTCCTCGACGAAGCAGGGCGACAAAGCGACG
AAGCAACCACTCCTGCTTTCCGTGAATGGACACCTGGCGCGACCTTTGAG
GACGAGATGGAGTTTGCCAACTGCCCGCATGCCAAAATCCAAGGCTTCCG
TATTGTCTTTTATCCGTATCAGATGGGAATTCGGACAATCTACCTTTTGC
AATGCGTTTTCCTTCTTGTCCTCCCCTCGATGGGAGGGAAAGCAGTCTTA
CGTGGTCCAGAGAGCGTGGTTGCTGACAGCACCACAAACTTGGAAGCGGA
CCCGCCTACCATCATTTCCTATTCCCCAGCCCCACGTTCGTATTTGAGGA
CAGTTGGATCCCCTGCTGACGCTGTGAAAATGGCGTTGGCGGCTCAAGCG
GCCGCGGAGAAGCGAATGGTCGATGGGGCCCATTGCAAAATCCAATGGAA
ATGGACTGTGTCAAAAGATCAACAGAACTCAACGGTCCCCGGTGCAGGTC
CTCCAGAGGACGACGACCCACCCACCATTTCCTTTTCCCACGTGGAAGCG
CTGGAGGAATCACCTGTCCTCCACGAGAGCTGGCGCTGGACGGAAGGAGC
AGAAGATCGAGAGATAGGAAAGAAAGGGCCGTTCGTGGCGTCGATGGAGC
GCTATACGGTGGCTTGGATCACAGATTAAGATGGGAGCCTGGGTGTGATT
ATGGTCCTCGACGAAGCAGGGCGACAAAGCGACGAAGCAACCACTCCTGC
TTTCCGTGAATGGACACCTGGCGCGACCTTTGAGGACGAGATGGAGTTTG
CCAACTGCCCGCATGCCAAAATCCAAGGCTTCCGTATTGTCTTTTATCCG
TATCAGATGGGAATTCGGACAATCTACCTTTTGCAATGCGTTTTCCTTCT
TGTCCTCCCCTCGATGGGAGGGAAAGCAGTCTTACGTGGTCCAGAGAGCG
TGGTTGCTGACAGCACCACAAACTTGGAAGCGGACCCGCCTACCATCATT
TCCTATTCCCCAGCCCCACGTTCGTATTTGAGGACAGTTGGATCCCCTGC
TGACGCTGTGAAAATGGCGTTGGCGGCTCAAGCGGCCGCGGAGAAGCGAA
TGGTCGATGGGGCCCATTGCAAAATCCAATGGAAATGGACTGTGTCAAAA
GATCAACAGAACTCAACGGTCCCCGGTGCAGGTCCTCCAGAGGACGACGA
CCCACCCACCATTTCCTTTTCCCACGTGGAAGCGCTGGAGGAATCACCTG
TCCTCCACGAGAGCTGGCGCTGGACGGAAGGAGCAGAAGATCGAGAGATA
GGAAAGAAAGGGCCGTTCGTGGCGTCGATGGAGCGCTATACGGTGGCTTG
GATCACAGATTAAGATGGGAGCCTGGGTGTGATTATGGTCCTCGACGAAG
CAGGGCGACAAAGCGACGAAGCAACCACTCCTGCTTTCCGTGAATGGACA
CCTGGCGCGACCTTTGAGGACGAGATGGAGTTTGCCAACTGCCCGCATGC
CAAAATCCAAGGCTTCCGTATTGTCTTTTATCCGTATCAGATGGGAATTC
GGACAATCTACCTTTTGCAATGCGTTTTCCTTCTTGTCCTCCCCTCGATG
GGAGGGAAAGCAGTCTTACGTGGTCCAGAGAGCGTGGTTGCTGACAGCAC
CACAAACTTGGAAGCGGACCCGCCTACCATCATTTCCTATTCCCCAGCCC
CACGTTCGTATTTGAGGACAGTTGGATCCCCTGCTGACGCTGTGAAAATG
GCGTTGGCGGCTCAAGCGGCCGCGGAGAAGCGAATGGTCGATGGGGCCCA
TTGCAAAATCCAATGGAAATGGACTGTGTCAAAAGATCAACAGAACTCAA
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