rna5476, rna5476 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5476
Unique Name	rna5476
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002466.1:48518..49757 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101022g2.5279.mrna
Orig protein id	gnl\|cribi\|Naga_101022g2.5279
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:48518..49757 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101022g2	gene5291	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25212.1	cds5462	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5476	rna5476-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at CM002466.1:48518..49757-
coding sequence from alignment at CM002466.1:48518..49757-

protein sequence of rna5476

>rna5476-protein ID=rna5476-protein|Name=rna5476|organism=Nannochloropsis gaditana|type=polypeptide|length=311bp
PSLPPTLPPSLPPTLLPTLLLALFFAFFSSFASFYLPKIRDRRYFPHHLG
NPLLFNYLYIYHPSPLDTHPPSQVILIFLCLFVYILPSCIITYIHAIPPS
LTLTLPSRPVSSFSACLCSSFLYDVDATFAPVLFLPPLFLPSSSGGADPT
VVDDRGKTPLDILHWQRWNDVTGAVTAQRLLEEALREPDRVRIVRAGRKA
REGGGRKGGRDGGREGEREGGREGGAREEFGGGGQVHGRERKVDARMTKR
ASGSTEQEEDGEEGGGRREREKVRAVLKFVLDSEMRPGLCPDLFEELMEM
TQVRWAERVRC

mRNA from alignment at CM002466.1:48518..49757-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5476 ID=rna5476|Name=rna5476|organism=Nannochloropsis gaditana|type=mRNA|length=1240bp|location=Sequence derived from alignment at CM002466.1:48518..49757- (Nannochloropsis gaditana)
CCCTCCCTCCCTCCCACCCTCCCTCCCTCCCTCCCTCCCACCCTCCTTCC
CACCCTTCTTCTCGCCCTCTTTTTCGCCTTCTTCTCCTCTTTTGCTTCCT
TCTATCTGCCAAAAATTCGTGATAGGCGCTATTTCCCGCATCACCTTGGC
AATCCCCTGCTTTTCAATTATCTGTATATATATCACCCCTCCCCCCTTGA
CACTCACCCTCCCTCTCAGGTCATTTTAATTTTCCTCTGCTTATTTGTGT
ATATACTTCCTTCCTGCATAATCACATATATACATGCCATCCCTCCCTCC
TTGACACTCACCCTCCCTTCCAGGCCCGTTTCCTCTTTCTCTGCTTGCTT
GTGTTCTTCCTTCCTGTATGATGTTGATGCAACCTTCGCTCCTGTCCTAT
TCCTCCCCCCTCTTTTCCTTCCCTCCTCATCAGGAGGGGCAGATCCTACC
GTCGTCGATGATCGTGGGAAGACGCCGTTGGACATCTTGCACTGGCAGCG
ATGGAACGACGTGACGGGAGCCGTTACGGCTCAACGGTTGCTGGAGGAGG
CGTTACGGGAGCCGGATCGTGTTCGGATCGTGAGGGCAGGGAGGAAGGCG
AGGGAGGGAGGGGGGAGGAAGGGAGGAAGGGACGGAGGGCGGGAGGGAGA
GAGGGAAGGAGGGAGGGAAGGAGGGGCGCGTGAGGAGTTTGGAGGGGGAG
GGCAGGTACATGGGAGGGAAAGGAAGGTAGATGCACGCATGACGAAAAGG
GCGAGTGGGAGCACAGAGCAGGAGGAAGATGGGGAGGAGGGGGGAGGAAG
ACGTGAACGAGAAAAGGTACGGGCAGTCCTGAAGTTTGTTTTGGACTCCG
AAATGCGGCCGGGGCTCTGTCCGGATTTGTTCGAGGAGTTGATGGAGATG
ACGCAGGTGCGGTGGGCGGAGAGGGTGCGATGTTAGGAAGGAAGGCAATG
CATGAGGGAGGCAGGTTGACAGGGTGGGGAAAAATTGTAGATGTACCAGG
AATAAGATCGGGGTGTGTCTGGTGCCCGATTTACAGCGCTTATCTGTGAG
TCCAAGGGTGGAGACACACTTGGAGATTGAGCGCGCATTAATGAATAAAG
AAATGATGGTGAATTTGTTACGTCCAATTGGGTAAGCTTAATGGTTTAAT
TATTTCAATATACGTATGGCCCAAGCGAGATTTTTGAGGGTTAAGCTGTG
GGGTAGACTATGCCGACCATGCAGAGAACAAGGGCCAGGC

Coding sequence (CDS) from alignment at CM002466.1:48518..49757-

>rna5476 ID=rna5476|Name=rna5476|organism=Nannochloropsis gaditana|type=CDS|length=936bp|location=Sequence derived from alignment at CM002466.1:48518..49757- (Nannochloropsis gaditana)
CCCTCCCTCCCTCCCACCCTCCCTCCCTCCCTCCCTCCCACCCTCCTTCC
CACCCTTCTTCTCGCCCTCTTTTTCGCCTTCTTCTCCTCTTTTGCTTCCT
TCTATCTGCCAAAAATTCGTGATAGGCGCTATTTCCCGCATCACCTTGGC
AATCCCCTGCTTTTCAATTATCTGTATATATATCACCCCTCCCCCCTTGA
CACTCACCCTCCCTCTCAGGTCATTTTAATTTTCCTCTGCTTATTTGTGT
ATATACTTCCTTCCTGCATAATCACATATATACATGCCATCCCTCCCTCC
TTGACACTCACCCTCCCTTCCAGGCCCGTTTCCTCTTTCTCTGCTTGCTT
GTGTTCTTCCTTCCTGTATGATGTTGATGCAACCTTCGCTCCTGTCCTAT
TCCTCCCCCCTCTTTTCCTTCCCTCCTCATCAGGAGGGGCAGATCCTACC
GTCGTCGATGATCGTGGGAAGACGCCGTTGGACATCTTGCACTGGCAGCG
ATGGAACGACGTGACGGGAGCCGTTACGGCTCAACGGTTGCTGGAGGAGG
CGTTACGGGAGCCGGATCGTGTTCGGATCGTGAGGGCAGGGAGGAAGGCG
AGGGAGGGAGGGGGGAGGAAGGGAGGAAGGGACGGAGGGCGGGAGGGAGA
GAGGGAAGGAGGGAGGGAAGGAGGGGCGCGTGAGGAGTTTGGAGGGGGAG
GGCAGGTACATGGGAGGGAAAGGAAGGTAGATGCACGCATGACGAAAAGG
GCGAGTGGGAGCACAGAGCAGGAGGAAGATGGGGAGGAGGGGGGAGGAAG
ACGTGAACGAGAAAAGGTACGGGCAGTCCTGAAGTTTGTTTTGGACTCCG
AAATGCGGCCGGGGCTCTGTCCGGATTTGTTCGAGGAGTTGATGGAGATG
ACGCAGGTGCGGTGGGCGGAGAGGGTGCGATGTTAG

Synonyms

Publications