EWM25212.1, cds5462 (CDS) Nannochloropsis gaditana

Overview
NameEWM25212.1
Unique Namecds5462
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:48822..49757 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25212.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101022g2.5279.mrna
GbkeyCDS
End range.
End range49757
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:48822..49757 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM25212.1 vs. NCBI_GenBank
Match: gi|585106890|gb|EWM25212.1| (hypothetical protein Naga_101022g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 626.32 bits (1614), Expect = 0.000e+0
Identity = 311/311 (100.00%), Postives = 311/311 (100.00%), Query Frame = 0 
Query:    1 PSLPPTLPPSLPPTLLPTLLLALFFAFFSSFASFYLPKIRDRRYFPHHLGNPLLFNYLYIYHPSPLDTHPPSQVILIFLCLFVYILPSCIITYIHAIPPSLTLTLPSRPVSSFSACLCSSFLYDVDATFAPVLFLPPLFLPSSSGGADPTVVDDRGKTPLDILHWQRWNDVTGAVTAQRLLEEALREPDRVRIVRAGRKAREGGGRKGGRDGGREGEREGGREGGAREEFGGGGQVHGRERKVDARMTKRASGSTEQEEDGEEGGGRREREKVRAVLKFVLDSEMRPGLCPDLFEELMEMTQVRWAERVRC 311
            PSLPPTLPPSLPPTLLPTLLLALFFAFFSSFASFYLPKIRDRRYFPHHLGNPLLFNYLYIYHPSPLDTHPPSQVILIFLCLFVYILPSCIITYIHAIPPSLTLTLPSRPVSSFSACLCSSFLYDVDATFAPVLFLPPLFLPSSSGGADPTVVDDRGKTPLDILHWQRWNDVTGAVTAQRLLEEALREPDRVRIVRAGRKAREGGGRKGGRDGGREGEREGGREGGAREEFGGGGQVHGRERKVDARMTKRASGSTEQEEDGEEGGGRREREKVRAVLKFVLDSEMRPGLCPDLFEELMEMTQVRWAERVRC
Sbjct:    1 PSLPPTLPPSLPPTLLPTLLLALFFAFFSSFASFYLPKIRDRRYFPHHLGNPLLFNYLYIYHPSPLDTHPPSQVILIFLCLFVYILPSCIITYIHAIPPSLTLTLPSRPVSSFSACLCSSFLYDVDATFAPVLFLPPLFLPSSSGGADPTVVDDRGKTPLDILHWQRWNDVTGAVTAQRLLEEALREPDRVRIVRAGRKAREGGGRKGGRDGGREGEREGGREGGAREEFGGGGQVHGRERKVDARMTKRASGSTEQEEDGEEGGGRREREKVRAVLKFVLDSEMRPGLCPDLFEELMEMTQVRWAERVRC 311
The following BLAST results are available for this feature:
BLAST of EWM25212.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585106890|gb|EWM25212.1|0.000e+0100.00hypothetical protein Naga_101022g2, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5476rna5476Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications