EWM25214.1, cds5459 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25214.1 vs. NCBI_GenBank
Match: gi|585106894|gb|EWM25214.1| (multidrug resistance-associated protein 4 [Nannochloropsis gaditana]) HSP 1 Score: 239.58 bits (610), Expect = 6.084e-80 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 Query: 1 MSRRYLCTRCGPTLFRGTVRSNLDLRGEHDDSALRHALATVQMTREGGREGGREGGLSISLDQEVMEEGANLSVGERQLLCFARALLRKTSVVVMDEGKDKEGRREGRKRNIGRGERSEGRK 122 MSRRYLCTRCGPTLFRGTVRSNLDLRGEHDDSALRHALATVQMTREGGREGGREGGLSISLDQEVMEEGANLSVGERQLLCFARALLRKTSVVVMDEGKDKEGRREGRKRNIGRGERSEGRK Sbjct: 1 MSRRYLCTRCGPTLFRGTVRSNLDLRGEHDDSALRHALATVQMTREGGREGGREGGLSISLDQEVMEEGANLSVGERQLLCFARALLRKTSVVVMDEGKDKEGRREGRKRNIGRGERSEGRK 122
BLAST of EWM25214.1 vs. NCBI_GenBank
Match: gi|814539771|emb|CEQ42894.1| (SPOSA6832_04771, partial [Sporidiobolus salmonicolor]) HSP 1 Score: 87.4261 bits (215), Expect = 1.246e-17 Identity = 43/91 (47.25%), Postives = 58/91 (63.74%), Query Frame = 0 Query: 12 PTLFRGTVRSNLDLRGEHDDSALRHALATVQMTREGGREGGREGGLSIS----LDQEVMEEGANLSVGERQLLCFARALLRKTSVVVMDEG 98 P + GT+RS LD+ GEH+D+ + AL V + +E R +E G + S LD EV E G+N S G+RQLLC ARALLR + V+V+DE Sbjct: 1519 PVILSGTLRSTLDIFGEHEDAEIYEALRRVHLIKESERPDAQEAGANRSVFWNLDAEVAEGGSNFSTGQRQLLCMARALLRSSRVLVLDEA 1609
BLAST of EWM25214.1 vs. NCBI_GenBank
Match: gi|1024079840|gb|KZV72757.1| (ATP-binding cassette transporter [Peniophora sp. CONT]) HSP 1 Score: 86.6557 bits (213), Expect = 2.071e-17 Identity = 44/93 (47.31%), Postives = 57/93 (61.29%), Query Frame = 0 Query: 12 PTLFRGTVRSNLDLRGEHDDSALRHALATVQM------TREGGREGGREGGLSISLDQEVMEEGANLSVGERQLLCFARALLRKTSVVVMDEG 98 PT+ GT+RSNLD GEHDD+AL AL V + T E + SLD +VME G N S GE+QLLC ARA+L+++ V++MDE Sbjct: 1337 PTILSGTIRSNLDPFGEHDDAALYEALRRVHLIPSGDATPEAATLNEENANVFKSLDTQVMEGGDNFSTGEKQLLCMARAILKRSKVLIMDEA 1429
BLAST of EWM25214.1 vs. NCBI_GenBank
Match: gi|671692372|emb|CDS07104.1| (hypothetical protein LRAMOSA09627 [Lichtheimia ramosa]) HSP 1 Score: 83.9593 bits (206), Expect = 1.881e-16 Identity = 46/86 (53.49%), Postives = 54/86 (62.79%), Query Frame = 0 Query: 13 TLFRGTVRSNLDLRGEHDDSALRHALATVQMTREGGREGGREGGLSISLDQEVMEEGANLSVGERQLLCFARALLRKTSVVVMDEG 98 TLF GTVRSNLD EH DS L HAL+ V MT SLD+ V + GAN S G+RQLLC ARALL+K+ ++VMDE Sbjct: 1171 TLFSGTVRSNLDPCNEHSDSILWHALSRVHMT-----------STIKSLDESVTDGGANWSQGQRQLLCMARALLKKSRLIVMDEA 1245
BLAST of EWM25214.1 vs. NCBI_GenBank
Match: gi|1032655351|gb|OAQ36616.1| (hypothetical protein K457DRAFT_12275 [Mortierella elongata AG-77]) HSP 1 Score: 82.8037 bits (203), Expect = 4.423e-16 Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 0 Query: 12 PTLFRGTVRSNLDLRGEHDDSALRHALATVQMTREGGREGGREGGLSISLDQEVMEEGANLSVGERQLLCFARALLRKTSVVVMDEG 98 P LF GT+R+NLD EHDD+AL L V + E G E G +LD EVME G+N S G+RQL+ ARALL+++ ++++DE Sbjct: 1502 PVLFIGTIRTNLDPFNEHDDAALWATLRRVHLIGEDGAESNSFG----NLDSEVMENGSNFSQGQRQLIGLARALLKQSKIIILDEA 1584
BLAST of EWM25214.1 vs. NCBI_GenBank
Match: gi|1173945574|gb|OQR94186.1| (ATP-binding Cassette (ABC) Superfamily [Achlya hypogyna]) HSP 1 Score: 82.8037 bits (203), Expect = 4.808e-16 Identity = 46/87 (52.87%), Postives = 54/87 (62.07%), Query Frame = 0 Query: 12 PTLFRGTVRSNLDLRGEHDDSALRHALATVQMTREGGREGGREGGLSISLDQEVMEEGANLSVGERQLLCFARALLRKTSVVVMDEG 98 P LF G++R NLD G DD+AL AL VQ+ GG L+ EV E+G NLSVG+RQLLC ARALLR T VVV+DE Sbjct: 1099 PVLFSGSLRFNLDPSGNADDAALWGALKKVQLATFVDARGG--------LEFEVAEKGGNLSVGQRQLLCIARALLRDTKVVVLDEA 1177
BLAST of EWM25214.1 vs. NCBI_GenBank
Match: gi|1023265424|gb|KZT60639.1| (P-loop containing nucleoside triphosphate hydrolase protein [Calocera cornea HHB12733]) HSP 1 Score: 82.0333 bits (201), Expect = 9.788e-16 Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 0 Query: 12 PTLFRGTVRSNLDLRGEHDDSALRHALATVQMTREGGREGGREGGLSISLDQEVMEEGANLSVGERQLLCFARALLRKTSVVVMDEG 98 PTL GT+RSNLD +HDD AL HAL + E G G +++LD V+ G+N SVG+RQL+ ARA+LR T +++DE Sbjct: 1443 PTLMSGTLRSNLDPFSQHDDGALYHALRATGLITETGASDGT----NLTLDSTVLTAGSNFSVGQRQLIALARAILRNTRALILDEA 1525
BLAST of EWM25214.1 vs. NCBI_GenBank
Match: gi|1026776979|gb|OAE35571.1| (hypothetical protein AXG93_2841s1040 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 81.6481 bits (200), Expect = 1.269e-15 Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 0 Query: 12 PTLFRGTVRSNLDLRGEHDDSALRHALATVQMTREGGREGGREGGLSISLDQEVMEEGANLSVGERQLLCFARALLRKTSVVVMDEG 98 P LF+GT+R NLD H D+ L AL+ V+MT + +GGL+ EV E G N SVG+RQLLC AR+LLRK+ +VVMDE Sbjct: 1322 PVLFQGTIRFNLDPFEMHTDAELHEALSKVEMT---AKIKSLKGGLT----SEVQENGDNFSVGQRQLLCLARSLLRKSKIVVMDEA 1401
BLAST of EWM25214.1 vs. NCBI_GenBank
Match: gi|647402784|emb|CDR48984.1| (RHTO0S22e00628g1_1 [Rhodotorula toruloides]) HSP 1 Score: 81.6481 bits (200), Expect = 1.270e-15 Identity = 43/95 (45.26%), Postives = 57/95 (60.00%), Query Frame = 0 Query: 4 RYLCTRCGPTLFRGTVRSNLDLRGEHDDSALRHALATVQMTREGGREGGREGGLSISLDQEVMEEGANLSVGERQLLCFARALLRKTSVVVMDEG 98 R+ PTLF GT+RSNLD GEHDD+ L +A+ + R G +G +SLD V G+N S G+RQL+ ARAL+R + V+VMDE Sbjct: 1381 RFTLVPQDPTLFSGTLRSNLDPNGEHDDATLWNAIKRSGLARAGNGDG-------LSLDTPVASSGSNFSQGQRQLIGLARALVRNSRVIVMDEA 1468
BLAST of EWM25214.1 vs. NCBI_GenBank
Match: gi|1022865753|ref|XP_016270006.1| (ABC transporter [Rhodotorula toruloides NP11] >gi|472581138|gb|EMS18887.1| ABC transporter [Rhodotorula toruloides NP11]) HSP 1 Score: 81.6481 bits (200), Expect = 1.359e-15 Identity = 43/95 (45.26%), Postives = 57/95 (60.00%), Query Frame = 0 Query: 4 RYLCTRCGPTLFRGTVRSNLDLRGEHDDSALRHALATVQMTREGGREGGREGGLSISLDQEVMEEGANLSVGERQLLCFARALLRKTSVVVMDEG 98 R+ PTLF GT+RSNLD GEHDD+ L +A+ + R G +G +SLD V G+N S G+RQL+ ARAL+R + V+VMDE Sbjct: 1379 RFTLVPQDPTLFSGTLRSNLDPNGEHDDATLWNAIKRSGLARAGNGDG-------LSLDTPVASSGSNFSQGQRQLIGLARALVRNSRVIVMDEA 1466 The following BLAST results are available for this feature:
BLAST of EWM25214.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|