rna5472, rna5472 (mRNA) Nannochloropsis gaditana

Overview
Namerna5472
Unique Namerna5472
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1078
Alignment locationCM002466.1:42850..43435 -

Link to JBrowse

Properties
Property NameValue
Productmultidrug resistance-associated protein 4
Orig transcript idgnl|cribi|Naga_102406g1.7374.mrna
Orig protein idgnl|cribi|Naga_102406g1.7374
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:42850..43435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102406g1gene5287Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5472rna5472-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25214.1cds5459Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5472 ID=rna5472|Name=rna5472|organism=Nannochloropsis gaditana|type=mRNA|length=1078bp
GTAAGAAAGCTTCATTTACGGGCGTGCCATCCATCCACATTTGAGTGACC
GTCGCTATTGTCGTGGTTTCTTCCGCGTGGCACTTAATTAAAGGCCGGTA
GCAACGCGCCAAGGACGTTGGCCTTCGACCTGTAAGGGCAATCGATCATG
CTCGCCGCCATCGCCTCACAGCACGAAAAAGTTGAGGCCTCCATGAAAAT
TCCCCCCTCCTTCCCAGCCTTCCTCTCCGCTTCCCCTTGCGTGGGGAAGG
TGATTGTGCTTCGGAGGAATGGGAAAGATGGAGGGCATTTCCCTCTGACG
CGGGGCCACGCCACGATTGGGCGCCACGAGAACTGCGATATCCGCATAGC
CCTGCCCTGGGTATCGCGCAAACACGCCGAACTTCGCGTAATCGACGCCG
CAGAGGGCGGGGAAGCAGGCCACGGGGTGGTGGTGACCCTGACGAATTTT
TCGGACGTGAACCCGACGAGCGTGAACGGCACCAAGCTGCAAAAGGGCAC
AAAGGGCACTGCCCGGCTACGACATGGCGACGTTTTCGTGGTCGCAGACC
GCTCTTTCCGCTTCGAATACACGGCGCCCCCTGGCGAGGACGGGCCAGGG
GACGACGGGGAGGACGCGGAGGCTACCCTCCCTTTCCAGGAAGGGAGGGA
AAACGTCGCCCCGACCACACATGTCCGAAAGTCAGGCAACCGTCCTTCGC
CCACCGCCACCCATCAAGTCTCGGCATGCGACAAGGAGAACCTGTCATGC
CCTTCCAAGAACCTCAGGGATGCCAACACAGGACCGTTGCCCCTGAAGCT
CAAAAACAGCGAGAAGTACAGCAGCCCGATCAAACAGAAAGGGAAGGATC
CCCCCCCCCCTCCCACCGGCATCTCGCTCCGGCCCAAGAATCTTCCGAAC
CGCTCCCTCCCTGCCATAGCAAAGGACGTCGCCGCTAGTCCCCCGCCCAG
CCTCCCTCGCTCGGCCCCCATGAAAGTCGCGACCATTCCGCCCTCTCTGA
GGGCGGCCATCAACGCTCGTCGTCAGAGCTACAACCAGCAGCCTGTGCAG
GAAGAGGTGGAGTGTGCAGAAGAGTATA
back to top

protein sequence of rna5472

>rna5472-protein ID=rna5472-protein|Name=rna5472|organism=Nannochloropsis gaditana|type=polypeptide|length=122bp
MSRRYLCTRCGPTLFRGTVRSNLDLRGEHDDSALRHALATVQMTREGGRE
GGREGGLSISLDQEVMEEGANLSVGERQLLCFARALLRKTSVVVMDEGKD
KEGRREGRKRNIGRGERSEGRK
back to top

mRNA from alignment at CM002466.1:42850..43435-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5472 ID=rna5472|Name=rna5472|organism=Nannochloropsis gaditana|type=mRNA|length=586bp|location=Sequence derived from alignment at CM002466.1:42850..43435- (Nannochloropsis gaditana)
ATGTCTCGACGTTATCTTTGCACACGCTGCGGAGTCGGCTGGCAGTGATC
CCTCAGGAGGTAGGATGGAAATGAGGGAGGAAAAGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAAGGAGGAGGAAGCAGGTTTCAAATATAAGGAC
AAGGATGCTTTCTTTCCATCCTCTTTCCTCCCAAATCCCCTCCTTACCAC
CCTCCTTCCCTTCCTCCCTCCCTCCCTCCCTCTCTCCCCCCTCTTCCCAG
CCCACTCTCTTCAGGGGCACAGTGCGTTCGAATCTGGATCTGAGAGGAGA
GCACGATGACAGCGCCCTCCGTCACGCCTTGGCCACCGTCCAGATGACAA
GGGAGGGCGGGAGGGAGGGCGGGAGGGAGGGCGGGTTGAGCATCTCCTTG
GACCAGGAGGTGATGGAGGAAGGGGCGAATTTGTCGGTGGGAGAGCGCCA
GCTGCTTTGTTTTGCCCGCGCGTTGTTAAGGAAGACTTCTGTCGTCGTCA
TGGACGAAGGTAAGGATAAAGAGGGAAGAAGGGAGGGGAGAAAAAGAAAT
ATAGGAAGAGGAGAGCGAAGCGAGGGAAGGAAGTAA
back to top

Coding sequence (CDS) from alignment at CM002466.1:42850..43435-

>rna5472 ID=rna5472|Name=rna5472|organism=Nannochloropsis gaditana|type=CDS|length=738bp|location=Sequence derived from alignment at CM002466.1:42850..43435- (Nannochloropsis gaditana)
CCCACTCTCTTCAGGGGCACAGTGCGTTCGAATCTGGATCTGAGAGGAGA
GCACGATGACAGCGCCCTCCGTCACGCCTTGGCCACCGTCCAGATGACAA
GGGAGGGCGGGAGGGAGGGCGGGAGGGAGGGCGGGTTGAGCATCTCCTTG
GACCAGGAGGTGATGGAGGAAGGGGCGAATTTGTCGGTGGGAGAGCGCCA
GCTGCTTTGTTTTGCCCGCGCGTTGTTAAGGAAGACTTCTGTCGTCGTCA
TGGACGAAGGTAAGGATAAAGAGGGAAGAAGGGAGGGGAGAAAAAGAAAT
ATAGGAAGAGGAGAGCGAAGCGAGGGAAGGAAGTAAATGTCTCGACGTTA
TCTTTGCACACGCTGCGGACCCACTCTCTTCAGGGGCACAGTGCGTTCGA
ATCTGGATCTGAGAGGAGAGCACGATGACAGCGCCCTCCGTCACGCCTTG
GCCACCGTCCAGATGACAAGGGAGGGCGGGAGGGAGGGCGGGAGGGAGGG
CGGGTTGAGCATCTCCTTGGACCAGGAGGTGATGGAGGAAGGGGCGAATT
TGTCGGTGGGAGAGCGCCAGCTGCTTTGTTTTGCCCGCGCGTTGTTAAGG
AAGACTTCTGTCGTCGTCATGGACGAAGGTAAGGATAAAGAGGGAAGAAG
GGAGGGGAGAAAAAGAAATATAGGAAGAGGAGAGCGAAGCGAGGGAAGGA
AGTAAATGTCTCGACGTTATCTTTGCACACGCTGCGGA
back to top
Synonyms
Publications