EWM25214.1, cds5459 (CDS) Nannochloropsis gaditana

Overview
NameEWM25214.1
Unique Namecds5459
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:43403..43435 -
Alignment locationCM002466.1:42850..43185 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25214.1
Productmultidrug resistance-associated protein 4
Orig transcript idgnl|cribi|Naga_102406g1.7374.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:43403..43435 -
CM002466.1supercontigCM002466.1:42850..43185 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0016887ATPase activity
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR003439ABC_transporter-like
Homology
BLAST of EWM25214.1 vs. NCBI_GenBank
Match: gi|585106894|gb|EWM25214.1| (multidrug resistance-associated protein 4 [Nannochloropsis gaditana])

HSP 1 Score: 239.58 bits (610), Expect = 6.084e-80
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
Query:    1 MSRRYLCTRCGPTLFRGTVRSNLDLRGEHDDSALRHALATVQMTREGGREGGREGGLSISLDQEVMEEGANLSVGERQLLCFARALLRKTSVVVMDEGKDKEGRREGRKRNIGRGERSEGRK 122
            MSRRYLCTRCGPTLFRGTVRSNLDLRGEHDDSALRHALATVQMTREGGREGGREGGLSISLDQEVMEEGANLSVGERQLLCFARALLRKTSVVVMDEGKDKEGRREGRKRNIGRGERSEGRK
Sbjct:    1 MSRRYLCTRCGPTLFRGTVRSNLDLRGEHDDSALRHALATVQMTREGGREGGREGGLSISLDQEVMEEGANLSVGERQLLCFARALLRKTSVVVMDEGKDKEGRREGRKRNIGRGERSEGRK 122          
BLAST of EWM25214.1 vs. NCBI_GenBank
Match: gi|814539771|emb|CEQ42894.1| (SPOSA6832_04771, partial [Sporidiobolus salmonicolor])

HSP 1 Score: 87.4261 bits (215), Expect = 1.246e-17
Identity = 43/91 (47.25%), Postives = 58/91 (63.74%), Query Frame = 0
Query:   12 PTLFRGTVRSNLDLRGEHDDSALRHALATVQMTREGGREGGREGGLSIS----LDQEVMEEGANLSVGERQLLCFARALLRKTSVVVMDEG 98
            P +  GT+RS LD+ GEH+D+ +  AL  V + +E  R   +E G + S    LD EV E G+N S G+RQLLC ARALLR + V+V+DE 
Sbjct: 1519 PVILSGTLRSTLDIFGEHEDAEIYEALRRVHLIKESERPDAQEAGANRSVFWNLDAEVAEGGSNFSTGQRQLLCMARALLRSSRVLVLDEA 1609          
BLAST of EWM25214.1 vs. NCBI_GenBank
Match: gi|1024079840|gb|KZV72757.1| (ATP-binding cassette transporter [Peniophora sp. CONT])

HSP 1 Score: 86.6557 bits (213), Expect = 2.071e-17
Identity = 44/93 (47.31%), Postives = 57/93 (61.29%), Query Frame = 0
Query:   12 PTLFRGTVRSNLDLRGEHDDSALRHALATVQM------TREGGREGGREGGLSISLDQEVMEEGANLSVGERQLLCFARALLRKTSVVVMDEG 98
            PT+  GT+RSNLD  GEHDD+AL  AL  V +      T E          +  SLD +VME G N S GE+QLLC ARA+L+++ V++MDE 
Sbjct: 1337 PTILSGTIRSNLDPFGEHDDAALYEALRRVHLIPSGDATPEAATLNEENANVFKSLDTQVMEGGDNFSTGEKQLLCMARAILKRSKVLIMDEA 1429          
BLAST of EWM25214.1 vs. NCBI_GenBank
Match: gi|671692372|emb|CDS07104.1| (hypothetical protein LRAMOSA09627 [Lichtheimia ramosa])

HSP 1 Score: 83.9593 bits (206), Expect = 1.881e-16
Identity = 46/86 (53.49%), Postives = 54/86 (62.79%), Query Frame = 0
Query:   13 TLFRGTVRSNLDLRGEHDDSALRHALATVQMTREGGREGGREGGLSISLDQEVMEEGANLSVGERQLLCFARALLRKTSVVVMDEG 98
            TLF GTVRSNLD   EH DS L HAL+ V MT               SLD+ V + GAN S G+RQLLC ARALL+K+ ++VMDE 
Sbjct: 1171 TLFSGTVRSNLDPCNEHSDSILWHALSRVHMT-----------STIKSLDESVTDGGANWSQGQRQLLCMARALLKKSRLIVMDEA 1245          
BLAST of EWM25214.1 vs. NCBI_GenBank
Match: gi|1032655351|gb|OAQ36616.1| (hypothetical protein K457DRAFT_12275 [Mortierella elongata AG-77])

HSP 1 Score: 82.8037 bits (203), Expect = 4.423e-16
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 0
Query:   12 PTLFRGTVRSNLDLRGEHDDSALRHALATVQMTREGGREGGREGGLSISLDQEVMEEGANLSVGERQLLCFARALLRKTSVVVMDEG 98
            P LF GT+R+NLD   EHDD+AL   L  V +  E G E    G    +LD EVME G+N S G+RQL+  ARALL+++ ++++DE 
Sbjct: 1502 PVLFIGTIRTNLDPFNEHDDAALWATLRRVHLIGEDGAESNSFG----NLDSEVMENGSNFSQGQRQLIGLARALLKQSKIIILDEA 1584          
BLAST of EWM25214.1 vs. NCBI_GenBank
Match: gi|1173945574|gb|OQR94186.1| (ATP-binding Cassette (ABC) Superfamily [Achlya hypogyna])

HSP 1 Score: 82.8037 bits (203), Expect = 4.808e-16
Identity = 46/87 (52.87%), Postives = 54/87 (62.07%), Query Frame = 0
Query:   12 PTLFRGTVRSNLDLRGEHDDSALRHALATVQMTREGGREGGREGGLSISLDQEVMEEGANLSVGERQLLCFARALLRKTSVVVMDEG 98
            P LF G++R NLD  G  DD+AL  AL  VQ+       GG        L+ EV E+G NLSVG+RQLLC ARALLR T VVV+DE 
Sbjct: 1099 PVLFSGSLRFNLDPSGNADDAALWGALKKVQLATFVDARGG--------LEFEVAEKGGNLSVGQRQLLCIARALLRDTKVVVLDEA 1177          
BLAST of EWM25214.1 vs. NCBI_GenBank
Match: gi|1023265424|gb|KZT60639.1| (P-loop containing nucleoside triphosphate hydrolase protein [Calocera cornea HHB12733])

HSP 1 Score: 82.0333 bits (201), Expect = 9.788e-16
Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 0
Query:   12 PTLFRGTVRSNLDLRGEHDDSALRHALATVQMTREGGREGGREGGLSISLDQEVMEEGANLSVGERQLLCFARALLRKTSVVVMDEG 98
            PTL  GT+RSNLD   +HDD AL HAL    +  E G   G     +++LD  V+  G+N SVG+RQL+  ARA+LR T  +++DE 
Sbjct: 1443 PTLMSGTLRSNLDPFSQHDDGALYHALRATGLITETGASDGT----NLTLDSTVLTAGSNFSVGQRQLIALARAILRNTRALILDEA 1525          
BLAST of EWM25214.1 vs. NCBI_GenBank
Match: gi|1026776979|gb|OAE35571.1| (hypothetical protein AXG93_2841s1040 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 81.6481 bits (200), Expect = 1.269e-15
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 0
Query:   12 PTLFRGTVRSNLDLRGEHDDSALRHALATVQMTREGGREGGREGGLSISLDQEVMEEGANLSVGERQLLCFARALLRKTSVVVMDEG 98
            P LF+GT+R NLD    H D+ L  AL+ V+MT    +    +GGL+     EV E G N SVG+RQLLC AR+LLRK+ +VVMDE 
Sbjct: 1322 PVLFQGTIRFNLDPFEMHTDAELHEALSKVEMT---AKIKSLKGGLT----SEVQENGDNFSVGQRQLLCLARSLLRKSKIVVMDEA 1401          
BLAST of EWM25214.1 vs. NCBI_GenBank
Match: gi|647402784|emb|CDR48984.1| (RHTO0S22e00628g1_1 [Rhodotorula toruloides])

HSP 1 Score: 81.6481 bits (200), Expect = 1.270e-15
Identity = 43/95 (45.26%), Postives = 57/95 (60.00%), Query Frame = 0
Query:    4 RYLCTRCGPTLFRGTVRSNLDLRGEHDDSALRHALATVQMTREGGREGGREGGLSISLDQEVMEEGANLSVGERQLLCFARALLRKTSVVVMDEG 98
            R+      PTLF GT+RSNLD  GEHDD+ L +A+    + R G  +G       +SLD  V   G+N S G+RQL+  ARAL+R + V+VMDE 
Sbjct: 1381 RFTLVPQDPTLFSGTLRSNLDPNGEHDDATLWNAIKRSGLARAGNGDG-------LSLDTPVASSGSNFSQGQRQLIGLARALVRNSRVIVMDEA 1468          
BLAST of EWM25214.1 vs. NCBI_GenBank
Match: gi|1022865753|ref|XP_016270006.1| (ABC transporter [Rhodotorula toruloides NP11] >gi|472581138|gb|EMS18887.1| ABC transporter [Rhodotorula toruloides NP11])

HSP 1 Score: 81.6481 bits (200), Expect = 1.359e-15
Identity = 43/95 (45.26%), Postives = 57/95 (60.00%), Query Frame = 0
Query:    4 RYLCTRCGPTLFRGTVRSNLDLRGEHDDSALRHALATVQMTREGGREGGREGGLSISLDQEVMEEGANLSVGERQLLCFARALLRKTSVVVMDEG 98
            R+      PTLF GT+RSNLD  GEHDD+ L +A+    + R G  +G       +SLD  V   G+N S G+RQL+  ARAL+R + V+VMDE 
Sbjct: 1379 RFTLVPQDPTLFSGTLRSNLDPNGEHDDATLWNAIKRSGLARAGNGDG-------LSLDTPVASSGSNFSQGQRQLIGLARALVRNSRVIVMDEA 1466          
The following BLAST results are available for this feature:
BLAST of EWM25214.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106894|gb|EWM25214.1|6.084e-80100.00multidrug resistance-associated protein 4 [Nannoch... [more]
gi|814539771|emb|CEQ42894.1|1.246e-1747.25SPOSA6832_04771, partial [Sporidiobolus salmonicol... [more]
gi|1024079840|gb|KZV72757.1|2.071e-1747.31ATP-binding cassette transporter [Peniophora sp. C... [more]
gi|671692372|emb|CDS07104.1|1.881e-1653.49hypothetical protein LRAMOSA09627 [Lichtheimia ram... [more]
gi|1032655351|gb|OAQ36616.1|4.423e-1647.13hypothetical protein K457DRAFT_12275 [Mortierella ... [more]
gi|1173945574|gb|OQR94186.1|4.808e-1652.87ATP-binding Cassette (ABC) Superfamily [Achlya hyp... [more]
gi|1023265424|gb|KZT60639.1|9.788e-1645.98P-loop containing nucleoside triphosphate hydrolas... [more]
gi|1026776979|gb|OAE35571.1|1.269e-1550.57hypothetical protein AXG93_2841s1040 [Marchantia p... [more]
gi|647402784|emb|CDR48984.1|1.270e-1545.26RHTO0S22e00628g1_1 [Rhodotorula toruloides][more]
gi|1022865753|ref|XP_016270006.1|1.359e-1545.26ABC transporter [Rhodotorula toruloides NP11] >gi|... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5472rna5472Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications