rna5471, rna5471 (mRNA) Nannochloropsis gaditana

Overview
Namerna5471
Unique Namerna5471
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1116
Alignment locationCM002466.1:29628..30705 +

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Properties
Property NameValue
ProductForkhead-associated domain containing protein
Orig transcript idgnl|cribi|Naga_100751g3.1613.mrna
Orig protein idgnl|cribi|Naga_100751g3.1613
Genemki67
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:29628..30705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
mki67gene5286Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5471rna5471-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25215.1cds5458Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5471 ID=rna5471|Name=rna5471|organism=Nannochloropsis gaditana|type=mRNA|length=1116bp
ATGCCTCAATCTCCAACCCGGAAAGCGCCCCTCAATTCTTCCACCTCTTC
CCCATCCTCCAGCGCTCTCTATTCGTCCTTAACCCAGCAAAGATGTGTAA
AATATGAGAATTCTTTTTCGGCTACCCTCTCCTCCGTTTCCAATGAACAA
AGTCAAACAAATGTAGTCGTTGAAGAAGGAACCCAAAGTCGTCGAGAAGA
AATGAAAGGGGAGGAGGACGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAGAGAAGGAGGAAAAAA
AATGCCAGCTTGCACACACGGCACGTGCAGCTCCAAGCGTTGGTGGAGAA
AAGAATACTGAATCTGGACTACATTCGCAAAGTACATAAAGGAGGGCAGT
ACTGGCTCCACACCGTCCTTCTCTCGCAAAACGTCATCCATCACTACGTG
CGCTCCCAGGTGCCATCCTCCCGGGCCTTAGTTTTCTTCCATCTAGGGGT
GTCCGTCTTCCCCCTGCTCGAGGCGCCATCAGCCTTGCGTCCTCATCCCC
ACTCTGGGGGAGAGAGTGAAAGCACGACAGTTTCGGAGGGGGAAGAAAGA
CGACTTAGTGGAAAGGAGGAATGTATTTCACAGCTGAGGTCTTTAGCCCA
GCTGTTCGAGGAGATGGAGTATCACACGTCTACGGGCGCCCTCCAGGCCA
TGAAGTTCCTTCTTGCCAAGTCCATCGACACACCTTTCCCCGAGCAGGCC
CCTGAAGGATCATTAGAGCCCATCAATCCACGCATCGTCCGCTTTTCCAA
TGAGGTGGTCTTTAAGAATTTCGGGGCGCCCTACATTCCATTTCCCCTCG
ACTATTTGGAGGTTTTGGACTCCCTCTGTCACACCCTCGCCCTGCTCTAC
CGCCAGCTCGGACGTCGGCATGCTGCAAGCTTGGAGCGAGACGCGGCACT
CTTCGAGGTCCTTGTGAAAATAGATGCCAAGGTAGGTAAAGCACCACATC
ATCAATCCCATCGCCAAGGAATTGACATCTTTGGCGACGAGGCTCGCAAA
GCAAGAATTAGAGGGTTGGCGATAGTAAATAAAGAAGAGCAGGAAACAAA
ACATGCGTCAATGTGA
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protein sequence of rna5471

>rna5471-protein ID=rna5471-protein|Name=rna5471|organism=Nannochloropsis gaditana|type=polypeptide|length=310bp
MLAAIASQHEKVEASMKIPPSFPAFLSASPCVGKVIVLRRNGKDGGHFPL
TRGHATIGRHENCDIRIALPWVSRKHAELRVIDAAEGGEAGHGVVVTLTN
FSDVNPTSVNGTKLQKGTKGTARLRHGDVFVVADRSFRFEYTAPPGEDGP
GDDGEDAEATLPFQEGRENVAPTTHVRKSGNRPSPTATHQVSACDKENLS
CPSKNLRDANTGPLPLKLKNSEKYSSPIKQKGKDPPPPPTGISLRPKNLP
NRSLPAIAKDVAASPPPSLPRSAPMKVATIPPSLRAAINARRQSYNQQPV
QEEVECAEEY
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mRNA from alignment at CM002466.1:29628..30705+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5471 ID=rna5471|Name=rna5471|organism=Nannochloropsis gaditana|type=mRNA|length=1078bp|location=Sequence derived from alignment at CM002466.1:29628..30705+ (Nannochloropsis gaditana)
GTAAGAAAGCTTCATTTACGGGCGTGCCATCCATCCACATTTGAGTGACC
GTCGCTATTGTCGTGGTTTCTTCCGCGTGGCACTTAATTAAAGGCCGGTA
GCAACGCGCCAAGGACGTTGGCCTTCGACCTGTAAGGGCAATCGATCATG
ctcgccgccatcgcctcaCAGCACGAAAAAGTTGAGGCCTCCATGAAaat
tcccccctccttcccagccttcctctccgcttccccttgcgTGGGGAAGG
TGATTGTGCTTcggaggaatgggaaagaTGGAGGGCATTTCCCTCTGACG
CGGGGCCACGCCACGATTGGGCGCCACGAGAACTGCGATATCCGCATAGC
CCTGCCCTGGGTATCGCGCAAACACGCCGAACTTCGCGTAATCGACGCcg
cagagggcggggaagcaggccacggggtggtggtgaccCTGACGAATTTT
TCGGACGTGAACCCGACGAGCGTGAACGGCACCAAGCTGCAAAAGGGCAC
AAAGGGCACTGCCCGGCTACGACATGGCGACGTTTTCGTGGTCGCAGACC
GCTCTTTCCGCTTCGAATACACGGCGCCCCCTGGCGAGGACGGGCCaggg
gacgacggggaggacgcggaggctaccctccctttccaggaagggaggga
aaacgtCGCCCCGACCACACATGTCCGAAAGTCAGGCAACCGTCCTTCGC
CCACCGCCACCCATCAAGTCTCGGCATGCGACAAGGAGAACCTGTCATGC
CCTTCCAAGAACCTCAGGGATGCCAACACAGGACCGTTGCCCCTGAAGCT
CAAAAACAGCGAGAAGTACAGCAGCCCGATCAAacagaaagggaaggatc
cccccccccctcccaccggcaTCTCGCTCCGGCCCAAGAATCTTCCGaac
cgctccctccctgccataGCAAAGGACGTCGCCGCTAGTCCCCCGCccag
cctccctcgctcGGCCCCCATGAAAGTCGCGACCATTCCGCCCTCTCTGA
GGGCGGCCATCAACGCTCGTCGTCAGAGCTACAACCAGCAGCCTGTgcag
gaagaggtggagtGTGCAGAAGAGTATA
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Coding sequence (CDS) from alignment at CM002466.1:29628..30705+

>rna5471 ID=rna5471|Name=rna5471|organism=Nannochloropsis gaditana|type=CDS|length=931bp|location=Sequence derived from alignment at CM002466.1:29628..30705+ (Nannochloropsis gaditana)
ATGctcgccgccatcgcctcaCAGCACGAAAAAGTTGAGGCCTCCATGAA
aattcccccctccttcccagccttcctctccgcttccccttgcgTGGGGA
AGGTGATTGTGCTTcggaggaatgggaaagaTGGAGGGCATTTCCCTCTG
ACGCGGGGCCACGCCACGATTGGGCGCCACGAGAACTGCGATATCCGCAT
AGCCCTGCCCTGGGTATCGCGCAAACACGCCGAACTTCGCGTAATCGACG
CcgcagagggcggggaagcaggccacggggtggtggtgaccCTGACGAAT
TTTTCGGACGTGAACCCGACGAGCGTGAACGGCACCAAGCTGCAAAAGGG
CACAAAGGGCACTGCCCGGCTACGACATGGCGACGTTTTCGTGGTCGCAG
ACCGCTCTTTCCGCTTCGAATACACGGCGCCCCCTGGCGAGGACGGGCCa
ggggacgacggggaggacgcggaggctaccctccctttccaggaagggag
ggaaaacgtCGCCCCGACCACACATGTCCGAAAGTCAGGCAACCGTCCTT
CGCCCACCGCCACCCATCAAGTCTCGGCATGCGACAAGGAGAACCTGTCA
TGCCCTTCCAAGAACCTCAGGGATGCCAACACAGGACCGTTGCCCCTGAA
GCTCAAAAACAGCGAGAAGTACAGCAGCCCGATCAAacagaaagggaagg
atccccccccccctcccaccggcaTCTCGCTCCGGCCCAAGAATCTTCCG
aaccgctccctccctgccataGCAAAGGACGTCGCCGCTAGTCCCCCGCc
cagcctccctcgctcGGCCCCCATGAAAGTCGCGACCATTCCGCCCTCTC
TGAGGGCGGCCATCAACGCTCGTCGTCAGAGCTACAACCAGCAGCCTGTg
caggaagaggtggagtGTGCAGAAGAGTATA
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Synonyms
Publications