EWM25215.1, cds5458 (CDS) Nannochloropsis gaditana

Overview
NameEWM25215.1
Unique Namecds5458
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:29775..30705 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25215.1
ProductForkhead-associated domain containing protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100751g3.1613.mrna
Genemki67
GbkeyCDS
End range.
End range30705
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:29775..30705 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR008984SMAD_FHA_domain
IPR000253FHA_dom
Homology
BLAST of EWM25215.1 vs. NCBI_GenBank
Match: gi|585106898|gb|EWM25215.1| (Forkhead-associated domain containing protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 634.41 bits (1635), Expect = 0.000e+0
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0
Query:    1 MLAAIASQHEKVEASMKIPPSFPAFLSASPCVGKVIVLRRNGKDGGHFPLTRGHATIGRHENCDIRIALPWVSRKHAELRVIDAAEGGEAGHGVVVTLTNFSDVNPTSVNGTKLQKGTKGTARLRHGDVFVVADRSFRFEYTAPPGEDGPGDDGEDAEATLPFQEGRENVAPTTHVRKSGNRPSPTATHQVSACDKENLSCPSKNLRDANTGPLPLKLKNSEKYSSPIKQKGKDPPPPPTGISLRPKNLPNRSLPAIAKDVAASPPPSLPRSAPMKVATIPPSLRAAINARRQSYNQQPVQEEVECAEEY 310
            MLAAIASQHEKVEASMKIPPSFPAFLSASPCVGKVIVLRRNGKDGGHFPLTRGHATIGRHENCDIRIALPWVSRKHAELRVIDAAEGGEAGHGVVVTLTNFSDVNPTSVNGTKLQKGTKGTARLRHGDVFVVADRSFRFEYTAPPGEDGPGDDGEDAEATLPFQEGRENVAPTTHVRKSGNRPSPTATHQVSACDKENLSCPSKNLRDANTGPLPLKLKNSEKYSSPIKQKGKDPPPPPTGISLRPKNLPNRSLPAIAKDVAASPPPSLPRSAPMKVATIPPSLRAAINARRQSYNQQPVQEEVECAEEY
Sbjct:    1 MLAAIASQHEKVEASMKIPPSFPAFLSASPCVGKVIVLRRNGKDGGHFPLTRGHATIGRHENCDIRIALPWVSRKHAELRVIDAAEGGEAGHGVVVTLTNFSDVNPTSVNGTKLQKGTKGTARLRHGDVFVVADRSFRFEYTAPPGEDGPGDDGEDAEATLPFQEGRENVAPTTHVRKSGNRPSPTATHQVSACDKENLSCPSKNLRDANTGPLPLKLKNSEKYSSPIKQKGKDPPPPPTGISLRPKNLPNRSLPAIAKDVAASPPPSLPRSAPMKVATIPPSLRAAINARRQSYNQQPVQEEVECAEEY 310          
BLAST of EWM25215.1 vs. NCBI_GenBank
Match: gi|919027981|ref|XP_013397823.1| (PREDICTED: nascent polypeptide-associated complex subunit alpha, muscle-specific form-like [Lingula anatina] >gi|919027983|ref|XP_013397824.1| PREDICTED: nascent polypeptide-associated complex subunit alpha, muscle-specific form-like [Lingula anatina])

HSP 1 Score: 116.316 bits (290), Expect = 3.357e-25
Identity = 58/114 (50.88%), Postives = 72/114 (63.16%), Query Frame = 0
Query:   33 GKVIVLRRNGKDGGHFPLTRGHATIGRHENCDIRIALPWVSRKHAELRVIDAAEGGEAGHGVVVTLTNFSDVNPTSVNGTKLQKGTKGTARLRHGDVFVVADRSFRFEYTAPPG 146
            GK++V++RNG DG HFPLT     IGR  +CDIRI LP VS++H +   ID  + G+      + +TN S VNPT VNGT L K    T  + H DVF V DRSFRFE+  PPG
Sbjct:    4 GKIVVIKRNGADGAHFPLTATSCLIGRSNDCDIRIQLPNVSKEHCK---IDVNQEGQ------IFVTNLSTVNPTMVNGTSLTK----TMLIGHNDVFTVIDRSFRFEF--PPG 102          
BLAST of EWM25215.1 vs. NCBI_GenBank
Match: gi|558154471|ref|XP_006121434.1| (PREDICTED: antigen KI-67 [Pelodiscus sinensis] >gi|558154480|ref|XP_006121436.1| PREDICTED: antigen KI-67 [Pelodiscus sinensis] >gi|946643934|ref|XP_014428163.1| PREDICTED: antigen KI-67 [Pelodiscus sinensis])

HSP 1 Score: 105.916 bits (263), Expect = 8.198e-25
Identity = 54/112 (48.21%), Postives = 66/112 (58.93%), Query Frame = 0
Query:   30 PCVGKVIVLRRNGKDGGHFPLTRGHATIGRHENCDIRIALPWVSRKHAELRVIDAAEGGEAGHGVVVTLTNFSDVNPTSVNGTKLQKGTKGTARLRHGDVFVVADRSFRFEY 141
            P  GK+IV++RNG DG HFPLT      GR   CDIRI LP VS++H +   I+  E  EA       L N S +NPT +NG   Q+       L+HGDVF + DRSFRFEY
Sbjct:    2 PLFGKIIVIKRNGTDGIHFPLTASSCLFGRKTECDIRIQLPQVSKEHCK---IEVNENKEA------ILFNLSTLNPTHLNGNSFQQ----PVHLKHGDVFTIVDRSFRFEY 100          
BLAST of EWM25215.1 vs. NCBI_GenBank
Match: gi|1072239219|ref|XP_018413316.1| (PREDICTED: antigen KI-67 [Nanorana parkeri])

HSP 1 Score: 114.39 bits (285), Expect = 1.870e-24
Identity = 55/111 (49.55%), Postives = 68/111 (61.26%), Query Frame = 0
Query:   30 PCVGKVIVLRRNGKDGGHFPLTRGHATIGRHENCDIRIALPWVSRKHAELRVIDAAEGGEAGHGVVVTLTNFSDVNPTSVNGTKLQKGTKGTARLRHGDVFVVADRSFRFE 140
            PC GK+IV++R+G DG HFPLT      GR   CDIRI LP VS++H ++ V    E GE      V +TN S VNP  +NG  L    K T RL+HGD+  + DRSFRFE
Sbjct:    2 PCRGKIIVIKRSGADGTHFPLTAATCLFGRKSECDIRIQLPHVSKEHCKVEV---KENGE------VLVTNLSSVNPAQLNGNAL----KQTVRLKHGDIITIIDRSFRFE 99          
BLAST of EWM25215.1 vs. NCBI_GenBank
Match: gi|697417839|gb|KGL78864.1| (Antigen KI-67, partial [Tinamus guttatus])

HSP 1 Score: 104.76 bits (260), Expect = 3.587e-24
Identity = 56/112 (50.00%), Postives = 66/112 (58.93%), Query Frame = 0
Query:   30 PCVGKVIVLRRNGKDGGHFPLTRGHATIGRHENCDIRIALPWVSRKHAELRVIDAAEGGEAGHGVVVTLTNFSDVNPTSVNGTKLQKGTKGTARLRHGDVFVVADRSFRFEY 141
            P  GKVIV++RNG DG HFPLT      GR   CDIRI LP VS++H +   I+  E  EA       LTN S VNPT +NG   Q+       L+HGDV  + DRSFRFEY
Sbjct:    2 PLFGKVIVIKRNGADGIHFPLTASSCLFGRKTECDIRIQLPQVSKEHCK---IEVNENKEA------VLTNLSAVNPTQLNGGCFQQPVP----LKHGDVLTIIDRSFRFEY 100          
BLAST of EWM25215.1 vs. NCBI_GenBank
Match: gi|678212051|gb|KFV79030.1| (Antigen KI-67, partial [Struthio camelus australis])

HSP 1 Score: 104.76 bits (260), Expect = 3.943e-24
Identity = 54/112 (48.21%), Postives = 66/112 (58.93%), Query Frame = 0
Query:   30 PCVGKVIVLRRNGKDGGHFPLTRGHATIGRHENCDIRIALPWVSRKHAELRVIDAAEGGEAGHGVVVTLTNFSDVNPTSVNGTKLQKGTKGTARLRHGDVFVVADRSFRFEY 141
            P  GK++V++R G DG HFPLT      GR   CDIRI LP VS++H +   I+  E  EA       LTN S VNPT +NG   Q+       L+HGDVF + DRSFRFEY
Sbjct:    2 PLFGKIVVIKRTGTDGIHFPLTASSCLFGRKIECDIRIQLPQVSKEHCK---IEVNENKEA------ILTNLSTVNPTQLNGGCFQQ----PVALKHGDVFTIIDRSFRFEY 100          
BLAST of EWM25215.1 vs. NCBI_GenBank
Match: gi|597783375|ref|XP_007255212.1| (PREDICTED: antigen KI-67-like isoform X1 [Astyanax mexicanus])

HSP 1 Score: 113.235 bits (282), Expect = 4.311e-24
Identity = 54/116 (46.55%), Postives = 72/116 (62.07%), Query Frame = 0
Query:   30 PCVGKVIVLRRNGKDGGHFPLTRGHATIGRHENCDIRIALPWVSRKHAELRVIDAAEGGEAGHGVVVTLTNFSDVNPTSVNGTKLQKGTKGTARLRHGDVFVVADRSFRFEYTAPP 145
            P  GK++V++RNG DG  FPLT      GR   CDIRI LP VS++H ++ + +  E         + LTN S VNPT +NG KLQ+    + RL+HGD+  + DRSFRFEY +PP
Sbjct:    2 PLHGKIVVIKRNGADGVEFPLT-ASCLFGRKPECDIRIQLPQVSKEHCKIELNENKE---------LILTNLSSVNPTCINGEKLQQ----SERLKHGDLITIIDRSFRFEYPSPP 103          
BLAST of EWM25215.1 vs. NCBI_GenBank
Match: gi|597783377|ref|XP_007255213.1| (PREDICTED: antigen KI-67-like isoform X2 [Astyanax mexicanus])

HSP 1 Score: 113.235 bits (282), Expect = 4.391e-24
Identity = 54/116 (46.55%), Postives = 72/116 (62.07%), Query Frame = 0
Query:   30 PCVGKVIVLRRNGKDGGHFPLTRGHATIGRHENCDIRIALPWVSRKHAELRVIDAAEGGEAGHGVVVTLTNFSDVNPTSVNGTKLQKGTKGTARLRHGDVFVVADRSFRFEYTAPP 145
            P  GK++V++RNG DG  FPLT      GR   CDIRI LP VS++H ++ + +  E         + LTN S VNPT +NG KLQ+    + RL+HGD+  + DRSFRFEY +PP
Sbjct:    2 PLHGKIVVIKRNGADGVEFPLT-ASCLFGRKPECDIRIQLPQVSKEHCKIELNENKE---------LILTNLSSVNPTCINGEKLQQ----SERLKHGDLITIIDRSFRFEYPSPP 103          
BLAST of EWM25215.1 vs. NCBI_GenBank
Match: gi|530620044|ref|XP_005299707.1| (PREDICTED: antigen KI-67 [Chrysemys picta bellii])

HSP 1 Score: 113.235 bits (282), Expect = 4.403e-24
Identity = 53/112 (47.32%), Postives = 66/112 (58.93%), Query Frame = 0
Query:   30 PCVGKVIVLRRNGKDGGHFPLTRGHATIGRHENCDIRIALPWVSRKHAELRVIDAAEGGEAGHGVVVTLTNFSDVNPTSVNGTKLQKGTKGTARLRHGDVFVVADRSFRFEY 141
            P  GK++V++RNG DG HFPLT      GR   CDIRI LP VS++H ++ V +  E           L N S VNPT +NG   Q+     A L+HGDVF + DRSFRFEY
Sbjct:    2 PLFGKIVVIKRNGTDGIHFPLTASSCLFGRKTECDIRIQLPQVSKEHCKIEVNENKEA---------ILINLSTVNPTQLNGNSFQQ----PAHLKHGDVFTIVDRSFRFEY 100          
BLAST of EWM25215.1 vs. NCBI_GenBank
Match: gi|591377690|ref|XP_007053101.1| (PREDICTED: antigen KI-67-like [Chelonia mydas])

HSP 1 Score: 112.849 bits (281), Expect = 5.167e-24
Identity = 53/112 (47.32%), Postives = 66/112 (58.93%), Query Frame = 0
Query:   30 PCVGKVIVLRRNGKDGGHFPLTRGHATIGRHENCDIRIALPWVSRKHAELRVIDAAEGGEAGHGVVVTLTNFSDVNPTSVNGTKLQKGTKGTARLRHGDVFVVADRSFRFEY 141
            P  GK++V++RNG DG HFPLT      GR   CDIRI LP VS++H ++ V +  E           L N S VNPT +NG   Q+     A L+HGDVF + DRSFRFEY
Sbjct:    2 PLFGKIVVIKRNGTDGIHFPLTASSCLFGRKTECDIRIQLPQVSKEHCKIEVNENKEA---------ILINLSTVNPTQLNGNSFQQ----PAHLKHGDVFTIVDRSFRFEY 100          
The following BLAST results are available for this feature:
BLAST of EWM25215.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106898|gb|EWM25215.1|0.000e+0100.00Forkhead-associated domain containing protein, par... [more]
gi|919027981|ref|XP_013397823.1|3.357e-2550.88PREDICTED: nascent polypeptide-associated complex ... [more]
gi|558154471|ref|XP_006121434.1|8.198e-2548.21PREDICTED: antigen KI-67 [Pelodiscus sinensis] >gi... [more]
gi|1072239219|ref|XP_018413316.1|1.870e-2449.55PREDICTED: antigen KI-67 [Nanorana parkeri][more]
gi|697417839|gb|KGL78864.1|3.587e-2450.00Antigen KI-67, partial [Tinamus guttatus][more]
gi|678212051|gb|KFV79030.1|3.943e-2448.21Antigen KI-67, partial [Struthio camelus australis... [more]
gi|597783375|ref|XP_007255212.1|4.311e-2446.55PREDICTED: antigen KI-67-like isoform X1 [Astyanax... [more]
gi|597783377|ref|XP_007255213.1|4.391e-2446.55PREDICTED: antigen KI-67-like isoform X2 [Astyanax... [more]
gi|530620044|ref|XP_005299707.1|4.403e-2447.32PREDICTED: antigen KI-67 [Chrysemys picta bellii][more]
gi|591377690|ref|XP_007053101.1|5.167e-2447.32PREDICTED: antigen KI-67-like [Chelonia mydas][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5471rna5471Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications