rna5419, rna5419 (mRNA) Nannochloropsis gaditana

Overview
Namerna5419
Unique Namerna5419
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1896
Alignment locationCM002465.1:955914..956920 +

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Properties
Property NameValue
ProductVRR-NUC domain protein
Orig transcript idgnl|cribi|Naga_101705g1.6836.mrna
Orig protein idgnl|cribi|Naga_101705g1.6836
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:955914..956920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101705g1gene5239Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5419rna5419-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25267.1cds5406Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5419 ID=rna5419|Name=rna5419|organism=Nannochloropsis gaditana|type=mRNA|length=1896bp
GGCGGTGTCGATAGGCAGCTACGACAATGTTCCCCATTCGAAAGCGTGTC
ATCCCACAGTACACCTTCTGTGGCTACTGGGGAACGAGATTATATATCGC
GCGTGCCCAGACTGTCATCCTATGGTACTTGGATGCCATATTTTTGAGGC
TGCTATTCTTCTAAGCGCAGGGTGGGAGGGAGAAGGAGAGAGGAGGTTGA
CTCGTGTCAGCTCGAGTCACAGCATTCCACGCTGAGCAAGCGGGAACTAT
CTTGAAGTCAAGACTTTTCATCACACAAACACGTCCACTTCAGGAGGCTG
GGTGCGGCATCGACCGGCTTCATAAGGCTTGCCATCGCATGCTCAGAGCG
TGGGGTGCCCTGGCGTCGATCTTCAACCCCGCAAGGCAGTATCTCGGCCT
TCCACTCACATTCATTGCTACCGACACCTTTGTCTCCCTTGCTGCAACGA
GAAAAGCATTCATAACCCTCCAAGACATTCAAGTCTGGGAGTCCTTGGTC
CCTCCGCGCGAGCGGCCGTCGGGCTCAACTTGTTTCTCACGTTTCCCCCG
CCCTCCCTCTACCCATTTGCGGTCCTTTATGACATCCGCAAATCCTCCGA
ATGCGGGAGCTTCCCTCTCCGAGAAGAAAAAGAACCTTCGAAAGAGCATC
ACCGCCCGCTTGCGTGCTTTGGACGATTCGTACGTGGCCGCGGAAGCCAG
CCGCCTTTTCCCCCGCTTGCTTGCGTTGGAGGACTACAAGGATAGCACCT
GTGTCAGTCTTTACCTCTCCATGCCAGCCAAAGAGGTACCCACATTCCCC
GACTTGCTCAAGACAGTAATGACAGACGGGAAAAGGGCGGAAGGGACAGC
GAGGGATGTCTACGTGCCTAAGGTCACAGGCCCTGCTCCTGGCGATATGG
TCATGCTTCCTCTTTCTTCTCCGAAAGACGTGAGCTCCTTCCCAGTCTCC
AAATGGGGCATCCCTGAGCCCCCCCTCCCTCCCTCCTTCTCTCCCTCCCT
TCCTCCCCTCGACCTCGTCCTCGTACCCGGCGTGGCCTTCGATAATAAGT
GCAATCGTTTGGGTCATGGCAAAGGCTACTACGATTCTTTCCTCTCTCGC
CTCTTTGCCAGCCACGCGGCGGCAGGTCGGGCGCGGCCCATGACCATCGG
TTTGGCGCTGGAGGAGCAAATGGTGGCGTCGGTGCCAGTGGATACCTTCG
ACCTCCCGTTGGATGCAGTTGTGACACCAGACAAGGTGTATTTTCGAAAA
GACCGGGAAAGGAAAGGGGAGGAGGAAGAAGGGGGAGTCGGTGCGAGGAG
AGGAAGGTAATTTGGGGCCTGTATGCGGCTTATAATGGGAGACAAACTTG
CGCAGGCAAGGTGCATAACGGATGGCAAAAAGATCTCGGGAGCGCTGAGG
ATGGAAACGGTCGCACGACAATTGAATAGGAGGCAAAAGAAGGTGAGAGA
AGGAAGCACTCCATTCCTTCCAGCGAAGTCGTGCCATGGAGTGCGTAGCA
AGGAGCGTCCGGGTATCCGGCTGGGACAGTCTCTGTCTCATGCGTCAGCG
AACGCCCAGTAACCTGATAATTAATAATCGTACGCGTAGCTATGACGGAT
TTGTCCGCGTCAGTATGAGCGGGTTTGCCCCCCAAGTGCGAAAGACACCC
TTCGAGCAGGGCCGTGGAACGCGTCGCAGGTAATGGACATTCTTCAATTT
TATTCGATTGTCAGGCTGGTGTATACATGCATTTCTAGCTGAACAGTTAT
CGATCCGCTCCACGTTGGACGTGTGTGACGCATTACTTTGATGAGTCTCG
TATCTTGCTTTCAAGTACTTGCATTCGGCACAAATTTGACACAATTCTCA
ATCTTATCTCCCAACTCCGCCGCACCACACTACATCGAACCTCCTT
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protein sequence of rna5419

>rna5419-protein ID=rna5419-protein|Name=rna5419|organism=Nannochloropsis gaditana|type=polypeptide|length=194bp
MRREGGEEEGPRERRGEGGHRRKETEGGREGEGGDATGVEGLAAVTGLPG
WVLERVGRRRGEGEGSNGGGGGGRGRGRGGSFPWQEPGSGKAWPPLASTT
ESGDGCGRREEEVRVPKLLGDADWGRWRCEVVLGEVKSENDRLDPRQEAW
LHILTAAGVVAKVMKVRTPGKRKGGRAGRRAGGQDGGDEFSGED
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mRNA from alignment at CM002465.1:955914..956920+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5419 ID=rna5419|Name=rna5419|organism=Nannochloropsis gaditana|type=mRNA|length=1007bp|location=Sequence derived from alignment at CM002465.1:955914..956920+ (Nannochloropsis gaditana)
atgaggagggaaggaggggaggaggaaggtccgagggaaaggagggggga
ggggggtcatcggaggaaggaaacggagggagggagggaaggagaaggtg
gagatGCCACGGGGGTAGAAGGGCTCGCGGCAGTGACGGGTCTTCCCGGG
TGGGTgttggagagggtgggaaggaggaggggggagggggagggcagcaa
cggcgggggaggaggaggacgagggaggggaagaggaggtagttTCCCCT
GGCAGGAGCCTGGGTCGGGGAAAGCATGGCCGCCGTTAGCCTCTACGACA
GAGTCCGGtgatggatgtggaaggagggaggaggaggttcgggtGCCGAA
ACTGCTTGGAGACGCGGACTGGGGCAGGTGGCGGTGTGAGGTGGTGCTGG
GGGAAGTGAAGAGCGAGAATGACCGATTGGACCCTCGACAGGAAGCCTGG
TTGCACATTTTAACGGCCGCGGGGGTGGTAGCTAAGGTGATGAAGGTGAG
GACgccggggaagaggaaggggggaagggcgggaaggagggcggggggac
aGGACGGAGGCGACGAATTTAGTGGGGAGGATTGATTGTTaaggtgagaa
aggagggaaggagacaggaagaggaggaaagggggggaaggaggactgag
gggagggaggggcgccaAAGTTAAGGTTCGGGGCGACGACACCGGCCTCA
GGGGATTGTGAGTGTATTAGACGAGCGATGAAAAAGGAAGGTTCAGGGGT
ATCGTGGAAGGGAGGCCTCTATCTTGTAATAAATCGGTGAAAGAAAAGCT
ACGAGTGGTCACACCAACCGTGTGCATCTCTGTGGGGGTCAGGATGACAG
GATGAGGGAATAGGCGCCAGGTAAGGAGAACAGAGACGGACACGACGGTC
CAGTGCAAGACTCAGAGGCCCATCGTCTCCCTCTTAGGCGCCTTGTGGCC
ATCCTTTCCAacacccccgccctccaatTCCATCATACCATCAATTCCat
caccacc
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Coding sequence (CDS) from alignment at CM002465.1:955914..956920+

>rna5419 ID=rna5419|Name=rna5419|organism=Nannochloropsis gaditana|type=CDS|length=585bp|location=Sequence derived from alignment at CM002465.1:955914..956920+ (Nannochloropsis gaditana)
atgaggagggaaggaggggaggaggaaggtccgagggaaaggagggggga
ggggggtcatcggaggaaggaaacggagggagggagggaaggagaaggtg
gagatGCCACGGGGGTAGAAGGGCTCGCGGCAGTGACGGGTCTTCCCGGG
TGGGTgttggagagggtgggaaggaggaggggggagggggagggcagcaa
cggcgggggaggaggaggacgagggaggggaagaggaggtagttTCCCCT
GGCAGGAGCCTGGGTCGGGGAAAGCATGGCCGCCGTTAGCCTCTACGACA
GAGTCCGGtgatggatgtggaaggagggaggaggaggttcgggtGCCGAA
ACTGCTTGGAGACGCGGACTGGGGCAGGTGGCGGTGTGAGGTGGTGCTGG
GGGAAGTGAAGAGCGAGAATGACCGATTGGACCCTCGACAGGAAGCCTGG
TTGCACATTTTAACGGCCGCGGGGGTGGTAGCTAAGGTGATGAAGGTGAG
GACgccggggaagaggaaggggggaagggcgggaaggagggcggggggac
aGGACGGAGGCGACGAATTTAGTGGGGAGGATTGA
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Synonyms
Publications