EWM25267.1, cds5406 (CDS) Nannochloropsis gaditana

Overview
NameEWM25267.1
Unique Namecds5406
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:955914..956498 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25267.1
ProductVRR-NUC domain protein
Orig transcript idgnl|cribi|Naga_101705g1.6836.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:955914..956498 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0016788hydrolase activity, acting on ester bonds
Vocabulary: INTERPRO
TermDefinition
IPR014883VRR_NUC
Homology
[Close]
BLAST of EWM25267.1 vs. NCBI_GenBank
Match: gi|585106994|gb|EWM25267.1| (VRR-NUC domain protein [Nannochloropsis gaditana])

HSP 1 Score: 360.533 bits (924), Expect = 1.916e-125
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0 
Query:    1 MRREGGEEEGPRERRGEGGHRRKETEGGREGEGGDATGVEGLAAVTGLPGWVLERVGRRRGEGEGSNGGGGGGRGRGRGGSFPWQEPGSGKAWPPLASTTESGDGCGRREEEVRVPKLLGDADWGRWRCEVVLGEVKSENDRLDPRQEAWLHILTAAGVVAKVMKVRTPGKRKGGRAGRRAGGQDGGDEFSGED 194
            MRREGGEEEGPRERRGEGGHRRKETEGGREGEGGDATGVEGLAAVTGLPGWVLERVGRRRGEGEGSNGGGGGGRGRGRGGSFPWQEPGSGKAWPPLASTTESGDGCGRREEEVRVPKLLGDADWGRWRCEVVLGEVKSENDRLDPRQEAWLHILTAAGVVAKVMKVRTPGKRKGGRAGRRAGGQDGGDEFSGED
Sbjct:    1 MRREGGEEEGPRERRGEGGHRRKETEGGREGEGGDATGVEGLAAVTGLPGWVLERVGRRRGEGEGSNGGGGGGRGRGRGGSFPWQEPGSGKAWPPLASTTESGDGCGRREEEVRVPKLLGDADWGRWRCEVVLGEVKSENDRLDPRQEAWLHILTAAGVVAKVMKVRTPGKRKGGRAGRRAGGQDGGDEFSGED 194
The following BLAST results are available for this feature:
BLAST of EWM25267.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585106994|gb|EWM25267.1|1.916e-125100.00VRR-NUC domain protein [Nannochloropsis gaditana][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5419rna5419Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications