EWM25271.1, cds5402 (CDS) Nannochloropsis gaditana

Overview
NameEWM25271.1
Unique Namecds5402
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:948879..949226 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25271.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100473g3.7774.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:948879..949226 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM25271.1 vs. NCBI_GenBank
Match: gi|585107001|gb|EWM25271.1| (hypothetical protein Naga_100473g3 [Nannochloropsis gaditana])

HSP 1 Score: 241.891 bits (616), Expect = 3.726e-81
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 
Query:    1 MYIKDSTAYFKNDHTFETSKTEERHQKQMERRDIDPNKLAVPEGNPVGERNDEGGANRLERLNEYVQEGNYYQARQEYIAVLEHKNHGAHLKTPTSLGRPSTCSRQTGTQPTIEL 115
            MYIKDSTAYFKNDHTFETSKTEERHQKQMERRDIDPNKLAVPEGNPVGERNDEGGANRLERLNEYVQEGNYYQARQEYIAVLEHKNHGAHLKTPTSLGRPSTCSRQTGTQPTIEL
Sbjct:    1 MYIKDSTAYFKNDHTFETSKTEERHQKQMERRDIDPNKLAVPEGNPVGERNDEGGANRLERLNEYVQEGNYYQARQEYIAVLEHKNHGAHLKTPTSLGRPSTCSRQTGTQPTIEL 115
[Close]
BLAST of EWM25271.1 vs. NCBI_GenBank
Match: gi|585107000|gb|EWM25270.1| (hypothetical protein Naga_100473g3 [Nannochloropsis gaditana])

HSP 1 Score: 227.639 bits (579), Expect = 8.063e-75
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 
Query:    1 MYIKDSTAYFKNDHTFETSKTEERHQKQMERRDIDPNKLAVPEGNPVGERNDEGGANRLERLNEYVQEGNYYQARQEYIAVLEHKNHGAHLKTPTSLGRPSTCSRQTG 108
            MYIKDSTAYFKNDHTFETSKTEERHQKQMERRDIDPNKLAVPEGNPVGERNDEGGANRLERLNEYVQEGNYYQARQEYIAVLEHKNHGAHLKTPTSLGRPSTCSRQTG
Sbjct:    1 MYIKDSTAYFKNDHTFETSKTEERHQKQMERRDIDPNKLAVPEGNPVGERNDEGGANRLERLNEYVQEGNYYQARQEYIAVLEHKNHGAHLKTPTSLGRPSTCSRQTG 108
The following BLAST results are available for this feature:
BLAST of EWM25271.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585107001|gb|EWM25271.1|3.726e-81100.00hypothetical protein Naga_100473g3 [Nannochloropsi... [more]
gi|585107000|gb|EWM25270.1|8.063e-75100.00hypothetical protein Naga_100473g3 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5415rna5415Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications