rna5415, rna5415 (mRNA) Nannochloropsis gaditana

Overview
Namerna5415
Unique Namerna5415
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length474
Alignment locationCM002465.1:948879..950472 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100473g3.7774.mrna
Orig protein idgnl|cribi|Naga_100473g3.7774
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:948879..950472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100473g3gene5237Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5415rna5415-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25271.1cds5402Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5415 ID=rna5415|Name=rna5415|organism=Nannochloropsis gaditana|type=mRNA|length=474bp
ATGGGAGTTCCATGGAGAGGCAATAGTGCGTACGCTGCATGCCGTAATAA
AGAACAACGAAACAGATATTCGTCAGAATTCCCTTCCGCGAGAAGGATAA
GCCTAGCGGCCCACGAGAGACGTACTTTACCGGAGGCAGAAAAACTGCTT
GTCATGGTGTCAAGCCTACCATCCAAGAGGGAGCACTTCAAAGGCCGTAA
ACTCCGGCACCGCAAGAGAAGCAGCGAGCCTCTCTCGCTGGACATCTCAA
ATAAAACCGCTGTCTTCCAGCATGACTGCGTACAAACATATTCCAAGTCA
GGAGCAGATAAAGCTGATATTGACGGAAAGATCAACTTATTGGGACTGGA
GGGTCAAGCGCTTCCACCCCTTTGTCATGAAATAGGTACAATCATGTCCA
CATGTGCGACAGAAATGCAAGAAACCTTCATGTGGGTCCGGGATGCTGCC
CGACACGGAAGAAAGAAGCTGTAA
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protein sequence of rna5415

>rna5415-protein ID=rna5415-protein|Name=rna5415|organism=Nannochloropsis gaditana|type=polypeptide|length=115bp
MYIKDSTAYFKNDHTFETSKTEERHQKQMERRDIDPNKLAVPEGNPVGER
NDEGGANRLERLNEYVQEGNYYQARQEYIAVLEHKNHGAHLKTPTSLGRP
STCSRQTGTQPTIEL
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mRNA from alignment at CM002465.1:948879..950472+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5415 ID=rna5415|Name=rna5415|organism=Nannochloropsis gaditana|type=mRNA|length=1594bp|location=Sequence derived from alignment at CM002465.1:948879..950472+ (Nannochloropsis gaditana)
ATGTACATAAAAGACAGTACAGCCTATTTTAAGAATGATCATACTTTCGA
AACATCGAAAACAGAGGAAAGACATCAAAAACAGATGGAAAGGCGTGACA
TAGATCCCAACAAGCTTGCTGTTCCAGAGGGTAATCccgtgggagagaga
aacGACGAAGGCGGTGCAAATCGCCTTGAACGTTTAAATGAATACGTGCA
GGAAGGGAATTACTACCAGGCAAGGCAAGAATACATTGCTGTTTTGGAAC
ACAAAAATCATGGCGCACATCTTAAGACTCCTACATCGCTAGGCAGGCCG
TCAACCTGTTCTCGCCAAACCGGTACGCAACCCACCATTGAATTATGAAC
AAAGATACCGCAAAGCAGCCGCATTTATTCGCTGCGGTCAAGTATACACC
TTTGCAGCTGGAGCTTAAGGTGCTagccctcgtcgtcctcaacTCCCTCA
TGCCACAGGTGGAAGctttcctgcccccacccGTGAACCGTCAGGTAATA
TCCACGATGAATATCATCACAACACGGCCGAAACCGTTCAAAACCGACAG
AAAGTGCCACGGGTGAGTAAATTATCGTCAACGTCTTTTTAACAATTCAA
ACTCCTCTCGCGGTAAAAcaaaagcgaggaagagcgaAAAAAAGATTTTG
TCTGAGGGTAAAATTTAGTAGCATGAAATTAACTCATGCCGAATATTATC
AAGCCACAGGGTAAGGATCAAGAGCCAAGTGTCTCGCCCCGGCGTCGATG
TCCCTGTCCTGAAAAAAAAGTTTAACGTGCAAGGAAGTAATCTGCCCTCC
ACTCCGTAAAAATAGCGAACGGTGTCGCCTGAtggacgggggggggtctC
TTGCTTAACAAACACCAAAACACGCGCAATCGTACCATTCCTTTAGCGTA
AAGCTCTTTGCATGTATAATGCCCTCATTGTAAGACTGAATGGGAGAAAA
CGCTTATCAGAGGTATCGAAGTACTTGTCCAAGCATCCCGGGACCCACCC
AGCTCGACTTGAATTTCAATAAAGCGAGAAAAAACACACACTTGACATTT
ACGTGGTAATGTCTGTACGAGTATAGTCTTCATCGTTTCCTCTCATTTGG
AGATGGCCTTTCGCGGATAGTTTTGATCGAAGATAGACTGGATAGATCGA
CAGGGGCGGGAGACTTGTGTTGTCATTTATCGCAAGGACACAACTGCTTG
CAATTCCCTACTTTCCAGTTGCAATTTGATAATATTTAAGATTCGTCCAT
GTAGTGGGCGGCCAAATGTTGTTAAGTCCAAAGAATACCACGACAATGTG
TTTGTCGATGCTGGGGGGCCAGCAAATGGATGACACTGGGCCGTGTGAGT
TAAGGAGGTTCGATGTAGTGTGGTGCGGCGGAGTTGGGAGATAAGATTGA
GAATTGTGTCAAATTTGTGCCGAATGCAAGTACTTGAAAGCAAGATACGA
GACTCATCAAAGTAATGCGTCACACACGTCCAACGTGGAGCGGATCGATA
ACTGTTCAGCTAGAAATGCATGTATACACCAGCCTGACAATCGAATAAAA
TTGAAGAATGTCCATTACCTGCGACGCGTTCCACGGCCCTGCTC
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Coding sequence (CDS) from alignment at CM002465.1:948879..950472+

>rna5415 ID=rna5415|Name=rna5415|organism=Nannochloropsis gaditana|type=CDS|length=348bp|location=Sequence derived from alignment at CM002465.1:948879..950472+ (Nannochloropsis gaditana)
ATGTACATAAAAGACAGTACAGCCTATTTTAAGAATGATCATACTTTCGA
AACATCGAAAACAGAGGAAAGACATCAAAAACAGATGGAAAGGCGTGACA
TAGATCCCAACAAGCTTGCTGTTCCAGAGGGTAATCccgtgggagagaga
aacGACGAAGGCGGTGCAAATCGCCTTGAACGTTTAAATGAATACGTGCA
GGAAGGGAATTACTACCAGGCAAGGCAAGAATACATTGCTGTTTTGGAAC
ACAAAAATCATGGCGCACATCTTAAGACTCCTACATCGCTAGGCAGGCCG
TCAACCTGTTCTCGCCAAACCGGTACGCAACCCACCATTGAATTATGA
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Synonyms
Publications