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Properties
| Property Name | Value |
|---|
| Product | TRAM, LAG1 and CLN8 lipid-sensing domain containing protein |
| Orig transcript id | gnl|cribi|Naga_100196g3.3056.mrna |
| Orig protein id | gnl|cribi|Naga_100196g3.3056 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:772577..773731 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5347 ID=rna5347|Name=rna5347|organism=Nannochloropsis gaditana|type=mRNA|length=2924bp
ATGCACCATCGGCGGCGTGGAGATGGCGGAGGCGGCAGCAGAAAATCAGA
TGAGGACGTACTCATTTCCTTAATGAAATTGGTAAGAGAAGGGCACCCCG
CCGCTTTGGAGGCACAAAATATCTACCAGCGTGACAACAATCAAGTAAAT
TTTCTGGGCCGGGCCCGTGCATTGCTGGAAGAGGAAGGGGTCTCGAAGCG
CCTCTCCCCGCCGCAAGAGCATCCCGGACAGAAGATATCTAGCGATGGGC
CTGTACAAAACGTGCCATCTCCTTCCTTTGAGAGAGTATCCTGTGGCGGT
AGAGACAATACAGGAAAAGGGCACAATCCTCAGCCGTCGCACCAGACAGG
CCACCGAGAGCAGGAGCAAAAACCGCAGCCCCACGAGCCACCAGATCCCC
AAACAGTCCACCAAGGAATACCGCCCTCTGTGTCGGATGCTGGGGAGAGG
AACGAAGCCCAGGGAGATGCGGGCGGGGGCGGGAACGGGGAGGACGTCGC
CAGGTCGTTGCGGCCTCGGCGGGTGACGCGAGACCAACAGGGGCGCATTT
GGGTGCTCGACTCTTTCAGCAAGCAGGCGAGCGTGATCCGGCCCAAAGCG
GGCCTGCTTGCGAAGTGGGAGGCGCCGGCCGCCCTCTTTGAGACCCTCTC
CCAGCCCGAGGTCGCCCTCTTCCGACTCGGCGTGCCCAGCAACACAACTG
CCATCATCAGCAAGGCAGTGCAAGGGAAGCGCGTGACTCCTGCCGCGTCC
TCGTCCTCCCCCGCCCTGGTCCACGGCACCGTCTCCTTCTACGCCCCCCG
TTCGGCCGGTGTCTTCGTTTTCCGCCTCTTCGACGCAAAGGACCCGGTCC
GTACGCACGCCACCAGCCAAGTCTTCTTAGTCGAGGTCCGAGACAGGGAG
GTGGAGGGCAACCTGCGTCTCATTTCCAGCCAATTGAAAGAGCGCAAGAC
CTTGGTGGCCGGTTTGTCCCAGTTCGCATTCCTCTTGAGGGGCATGGCCC
CCTATGCCCCGAGCAGGCAGCTGCAGTCCTTACTGTGGACCTGCCTGCAG
CTGAGCGTCCAGCAAATCAAGGACGGGGCAGAGGAGGGCGGGAGGGAGGG
GGACGAAGGCGAGGGGATTGCCGGTGGGAGCGACAAGCCCCGGAGTCGGT
ACCCGGTAATCATTGGCGTGGCGGCGGTCTTGCACGCAGCTCTGCAGAAC
CGCTTTGTCCTGTCTTGCCTGGAGGGGGCGCAAGTAGCGACTTTGGAGGA
GGCTCAGGCGCGCTGGTGCCTGTTCAACGAGGAGTTCTACCCCTCCGAGG
CCGACAAGCTCGCGCACTACCGGGATCAGTGGGGTTTGGCTTTCAGGCCC
GTCCCTCCTCCCTCCATCCTGCCCAAGGTGGCGAACGCCCTTACGGAGGA
AATTGAATCGCTTCTCCCGGCGCTCCTCCCATCCCAGGCCTGTTTTCAGA
CCAGGGAGAACGTTCGCGAGCGCGTGGAGGCGCTTCTTCCATCCCGTGGA
CCGACGACTTTCCCCGACGGCACCCGCCTCCGAGTCTTTGGTTCTAGTGC
CAACAATTTCGGAAACGATGCTGCAGACCTGGACATGTGTGTGACCTTCC
CGGACTCCTCCCCACTGCCGGCGGGAAGCTCGGGGGAGATGATCGAGGCC
CTCGCCTCTCTGTTGGAGGCCAATGGCATGGAGGACGTGGTCGCACGCCC
CACCGCCAGGATCCCCATCGTCTTGTTCCGGGAACCGGGGACAGGCTTGG
ACTGCGACATCTCGGTGGAGAACCCCCTCGCCCTCAGGAATACGCAGCTA
CTGCACGAGTACAGCCGAGTGGACCCGCGCGTTCGGGCTCTCGCTTACAT
AGTCAAACACTGGGCACGGGCCAGGAAGATCAACAATGCAAGCGGCGGTA
CACTCTCCTCGTACGCGTACATCCTGATGGTCTTGCACTTTTTGCAAACC
GCGGCGGCGGCCGTGCCTTCCACTCCAGACACCCCGTGCTATGCACCCCT
GGTCCCCAACCTGCAGCTGTTGCCGCCTGACTGGAAAGGGAACGAAATGG
ACCGGCGGGAACAGATGCAAGGACAACGGCAGCTGCCTCGCCAACTCGTG
ACACACCCCTTGGAGGGCATGGACGTCGACACCTATTTTTACACGGAACC
GCCTTCGGAGGAGCAGGGACAGCCCAACGGGCAGAGGAGTCTGTTGAGAG
AGTACGCTGCAAGGAACAAGGCATCCGTGGGCGAGTTGTTGGTCGCCTTC
TTTTGGTACTACAGCTGGGAGTTTGACTACCGCGACCTCGTGCTGAGTGT
GCGCTTGGGAGGGGCCATGAAAAAGGAGAGGAAAGCGGAGGAAGACGGGT
GGGCGGTCAATTCTAGACTCGCAATTGAGGATCCTTTTGAGACCTGGTAT
AACGTTACGCATTTTTTGAAAGAGGGAAAACACCGGCATATCCGCCAAGA
ATTTGCAAGAGCTTATGCATTGTGTGTGGAGGAGGCAATGGGGGAGGGTG
CGACAGAGGCAGGTGCCGAGGGTTTATTGGCGCGGATATGTGAGGAAGCG
CCTGATCCGCCTGCTCGGAAGGAGACGATGGAAGACGACGCCGGCGTTGT
ACAGGATGTGCAGGCATTGGGGTTGGAAGAGGCTGAAAAGGAGATGAGCG
GGAAAGGAGGAGGCGCACAAGAAGGAAATGAGACCCAGGATCTTCTCTAA
GGCTAGAGTAGGATTTCGCCAGTACCGATAAAGGTTAATAAGGTACCAAT
GGGATAGAGGAAAGAGCTGTGGTAAAAATCTCAGCCGCCAAGTATTTTGA
TTGAGAGTAAATCAGCCCGAAAGTATCGTGTTGCATCAATTTGTTGCATT
AATTTGTGAGAATCAAAAAACATAGTCCGCGGAATAGATGCAATAGAAGC
AAACGGACAATAGCTCATTTCAAG back to topprotein sequence of rna5347 >rna5347-protein ID=rna5347-protein|Name=rna5347|organism=Nannochloropsis gaditana|type=polypeptide|length=253bp
MKTTDLLAAIQLYVDILADRWPGLVLSTVAWSVVFGLVCVLPAISGTSFD
FRNRTVSILHAFLSAYLTLVLVLLETPCEIGGPNTRNQIIVLNVSTGYFI
YDYVACTLNDVRKRHFDTMNFFHHLASLAGLLTGLINERSGAELGMCLFL
MEVSNPFMHTIHLFRELGYNDAPVAEANKALFAIIFTLARVVGGPFLTYY
TLVSPRTHWVIKAGALGILAVSFLWFSKIVAMLSKAFGGSEGKDKGGEKK
KGR back to topmRNA from alignment at CM002465.1:772577..773731+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5347 ID=rna5347|Name=rna5347|organism=Nannochloropsis gaditana|type=mRNA|length=1155bp|location=Sequence derived from alignment at CM002465.1:772577..773731+ (Nannochloropsis gaditana)
CATAATTGCAGTCAACGGTCAGAGTGTTTGGTCCATGCCGTAGGTTGATG
TCTATATTCATGGCTGTGTCCACGGCATGCATGCGTAGGACTCAGTGTCA
GCATTGTGAGCTGCGACAGGTCGTTCACTCCCGTGTTGCATCAAGCGACG
CTTTATCCTCCTACTACTAGTAGGATTCTAACAACTCTTCTATCTGCCAC
ACACACGCTCGGACACACGTCCCTTagtccctccttcactcaTCATGAAG
ACGACGGATCTCCTTGCAGCCATCCAGCTCTACGTGGATATACTGGCAGA
CCGGTGGCCCGGATTAGTCTTGTCTACGGTAGCCTGGTCAGTAGTGTTCG
GCCTCGTCTGTGTCCTGCCGGCCATCTCGGGCACAAGCTTCGACTTTCGA
AACCGGAccgtctccatcctccacgcCTTTCTTTCTGCTTACCTGACCCT
GGTCCTGGTTCTGCTGGAGACTCCTTGCGAAATCGGGGGCCCGAACACCC
GCAATCAGATCATTGTCCTGAACGTCAGCACGGGCTATTTCATCTACGAC
TACGTGGCCTGCACATTAAACGACGTCCGGAAGCGGCATTTCGATACCAT
GAACTTTTTCCACCACCTGGCTTCCCTGGCCGGCCTTTTGACGGGGCTCA
TAAACGAACGTTCCGGTGCCGAGCTCGGCATGTGCCTGTTCTTGATGGAG
GTCTCCAACCCTTTCATGCACACCATCCACCTCTTCCGAGAGCTCGGTTA
CAATGACGCCCCTGTGGCCGAGGCGAACAAAGCCCTCTTCGCCATCATTT
TTACTCTGGCCCGTGTTGTCGGCGGCCCTTTCCTGACCTACTATACCTTG
GTCAGTCCACGTACCCACTGGGTGATCAAAGCCGGCGCCCTCGGCATCct
tgccgtctccttcctaTGGTTTTCCAAGATTGTGGCCATGCTGAGCAAGG
CCttcggagggagcgagggaaaggataaggggggagagaaaaaaaagggt
AGATAGCAAAGCGGAGGGCTTCTCACCCCTCAGTAGGGCGGCCGCGTGGC
GCGCATAAGAATGCGCTCTCACACGCCCTTGAGCAGTAAATTAAAAACAC
TTTACGGAGCCCTAGCATCAcacttttccatttccttgcAAGCAAAGCGA
CAGCG back to topCoding sequence (CDS) from alignment at CM002465.1:772577..773731+ >rna5347 ID=rna5347|Name=rna5347|organism=Nannochloropsis gaditana|type=CDS|length=762bp|location=Sequence derived from alignment at CM002465.1:772577..773731+ (Nannochloropsis gaditana)
ATGAAGACGACGGATCTCCTTGCAGCCATCCAGCTCTACGTGGATATACT
GGCAGACCGGTGGCCCGGATTAGTCTTGTCTACGGTAGCCTGGTCAGTAG
TGTTCGGCCTCGTCTGTGTCCTGCCGGCCATCTCGGGCACAAGCTTCGAC
TTTCGAAACCGGAccgtctccatcctccacgcCTTTCTTTCTGCTTACCT
GACCCTGGTCCTGGTTCTGCTGGAGACTCCTTGCGAAATCGGGGGCCCGA
ACACCCGCAATCAGATCATTGTCCTGAACGTCAGCACGGGCTATTTCATC
TACGACTACGTGGCCTGCACATTAAACGACGTCCGGAAGCGGCATTTCGA
TACCATGAACTTTTTCCACCACCTGGCTTCCCTGGCCGGCCTTTTGACGG
GGCTCATAAACGAACGTTCCGGTGCCGAGCTCGGCATGTGCCTGTTCTTG
ATGGAGGTCTCCAACCCTTTCATGCACACCATCCACCTCTTCCGAGAGCT
CGGTTACAATGACGCCCCTGTGGCCGAGGCGAACAAAGCCCTCTTCGCCA
TCATTTTTACTCTGGCCCGTGTTGTCGGCGGCCCTTTCCTGACCTACTAT
ACCTTGGTCAGTCCACGTACCCACTGGGTGATCAAAGCCGGCGCCCTCGG
CATCcttgccgtctccttcctaTGGTTTTCCAAGATTGTGGCCATGCTGA
GCAAGGCCttcggagggagcgagggaaaggataaggggggagagaaaaaa
aagggtAGATAG back to top
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