rna5333, rna5333 (mRNA) Nannochloropsis gaditana

Overview
Namerna5333
Unique Namerna5333
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1685
Alignment locationCM002465.1:741011..742385 +

Link to JBrowse

Properties
Property NameValue
ProductGlutaredoxin
Orig transcript idgnl|cribi|Naga_100005g132.6704.mrna
Orig protein idgnl|cribi|Naga_100005g132.6704
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:741011..742385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g132gene5154Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5333rna5333-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25410.1cds5320Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5333 ID=rna5333|Name=rna5333|organism=Nannochloropsis gaditana|type=mRNA|length=1685bp
GTAGGAGAGGCTGAAGTAGGGGGAGGGGAGTGTGCTGCTGGGCATGGGAC
GGGCAGGCGCCATGGCAAGAGCGTAGTCTTCCTCGTGCACGCCTTGTCGG
CGGAAGCGCGGATGGCCGCGGAGGAGCTCCAGTCTCTGGGGCACTTGGAG
GAGGACATCTTGGGCAGCGATTTTGCGCTCCAACGCCGTCGGGAACGGGC
TTTACGAATCCTTCCCTTGTGTGTGGAGGGGTTGGAGGCTGTGCTGCGTT
TTTTGTGCGGGGCAGGCAATGGTCCGGAGTGCGTAATAGAGGGGAACGAG
TCATCCGCAAGGTCCGAGTCGAGGGCTAGATGCGATGGAGAGTGGTGGAT
GCTCCCGGGGGAGAACTTGTTGGATATGCGGGCCTCTTTGCACGACGCGT
TGGGGGCTTTCCTGAGACTCCTGCAGGATGGGGCGGGGGAGTGGAGGCAG
ACCAGGGTGCGGACAGCGGGTGGACCGGATCGGGTATGGGAGGAACTGGG
CGAGGAATTGGAGGCGGTCTTCCGGGAGGTGGTTGCCTTCATGAGTGCGA
TGCTCTCTGAGGACGAGGGCTGTCTGAGTGCGGAGGAAACGCTGGACGTG
TTGCCCTTCTTCAAGGCCGTGGTCGGGGAGGACCCTCGATGGATGCGACC
ATGGGTGTCACGGGCGATGTTGTTAGGGATAGAGAACGGGGACGACGACG
CCGAGGCGAGCATTCGGGCGATTGACCGGCTCGTAGATGAGTGTCAGATC
CATCACTGGTTCGTCAAGCAGCTAAAGCGCCCTACCCGCGACGCATCGGA
GCAAGGCCAGCATGTCGACCTCCTTTTCATCTTCCACGAGATCATTGTCC
GCGGTGGGCAACGAGTTATTTGCGACGATGTCGCCTGCCTTCTCCTCTTT
CACCCATCCATTTCCAGCCTTGTGCCTGACCTGGTCCTGGATAATTACCA
TCCTTCTTCCTCTTGTCTCGCGTTCACGTCCTCGTCCTCCGTGCGCCTTG
GGCTTCACCGGGTGTGGTTTGTCCTGTCGATTTTGTGGGAGAGGGCGCAG
TTTCGCTCTGGCAGCGAAGGAAAGAGGGGGATTGCCGAGGACGTGGAGTA
TCTGGAGCTGCAGGGTCTGTTGGATGGACTTGTGCCTCCTGGAAGCGAGA
CACGTCTCTCATGGTTGACGGGCATAGGAAGAGTGCTCGTAGAGGGCGGT
AAAGCATTGATATCTGCACCAAGGTGCCATGCTCATGCGGCTGAAGGCCC
AAAATTGACGGAAGCAGAGCGGGACGAGATCTCGGATGCCTGGAAGCAAA
GCATGCGCATTTTTTCATATCTACCGCGTAGCGTGCAGCAGGAAGTCTTG
CAAAGACTAAGACTGTATTACAATGCCGAAGATCTGCAAGCCCTGGAAGA
TGAATGGGTCTTGTTGGATGCAGCAGCGGCAGTGTTGTAGTGACCAAGAG
GAGGGGTAATTTGAACACATGAAACAAAAATGAAAAGAATTGTACAGTTC
TGGTTTTAGAAACCTCTTTACCCAAAGTCACAATGTGTAGAAGTTCTAGC
AATGAAAGCATGATAGATATCGACAATGAATTCGTTTCAAACCAGATACA
TGGCCACTGCGCTTCTGACAAACAAATGTTATGATTCTAGCGTGGAATTT
AATTTTCAATGTTCATGTTAAAATGTTCAAAAATC
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protein sequence of rna5333

>rna5333-protein ID=rna5333-protein|Name=rna5333|organism=Nannochloropsis gaditana|type=polypeptide|length=398bp
MSLRRALGISHIARSHRVALVMPDASTASYFPACASGRRSFYSTSGRKQS
KRRDYRGPLLVGGSLVGASTIQCYLHHRAFSSPTVLGPNQARNQLIVSAS
SVTAIGAAAAAALAFSSTSMAAASAAAPSTVPTALQASNAISPTQDLQSQ
PASLNPLEGLRITLYQYKICPFCCKVKAVLDFYKVPYETLDVNPLTKAEI
KFSSDYRKVPIARLGQEVVRDSPVIVKRIADMLYAARVAPTRDLDVFFSP
DAMRWAEWADKELAVLLFPNITRSFGESFQAFSYVNEVPHFSFLDKLSNQ
WVGATAMWAAQGKIKKKYNIADERTALFDALQRWTREVGEKPFLGGTQPN
VGDLGVYACIHAIEGLDAFKDLMANTDISEWYTRVEHAIGASSCVRAE
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mRNA from alignment at CM002465.1:741011..742385+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5333 ID=rna5333|Name=rna5333|organism=Nannochloropsis gaditana|type=mRNA|length=1375bp|location=Sequence derived from alignment at CM002465.1:741011..742385+ (Nannochloropsis gaditana)
AAGTGCTTGATGCGCGTGTGCCCATTATTCTGTCACGAAAACAGGTAACC
TGGCGTAGGACGATCTTTGCATTATGTCGCTCCGTCGCGCTCTCGGCATC
AGTCACATCGCACGCAGTCACCGCGTGGCCCTCGTCATGCCAGATGCATC
GACAGCGTCATATTTCCCTGCCTGTGCGAGTGGCCGGCGCTCTTTCTACA
GCACTAGCGGGAGAAAGCAGAGCAAACGAAGAGACTACCGAGGGCCCTTG
CTCGTGGGTGGCTCCTTGGTGGGAGCATCCACGATCCAATGTTACCTTCA
CCATCGCGCATTCAGTAGCCCTACTGTCCTAGGACCAAACCAAGCACGCA
ATCAACTCATTGTATCTGCTTCGTCGGTGACAGCAATAGGGGCAGCGGCT
GCAGCAGCCCTTGCATTTTCATCGACCTCGATGGCCGCAGCATCCGCCGC
TGCCCCGAGTACCGTACCGACAGCCTTGCAGGCATCGAATGCGATCAGCC
CAACCCAAGATCTTCAGTCCCAGCCAGCATCTCTAAACCCCTTGGAGGGC
CTTCGGATCACTTTGTATCAGTATAAAATCTGCCCCTTCTGCTGCAAAGT
CAAGGCCGTGCTGGACTTCTACAAGGTCCCGTACGAAACGTTAGACGTAA
ATCCACTCACCAAAGCCGAAATCAAGTTTTCATCTGACTACCGCAAAGTG
CCTATTGCGCGCCTAGGTCAAGAAGTAGTGCGTGACTCCCCGGTAATCGT
GAAGAGGATTGCGGACATGCTCTACGCGGCCCGCGTGGCCCCAACCAGAG
ACTTGGACGTTTTCTTCTCTCCAGACGCCATGCGCTGGGCCGAATGGGCA
GACAAGGAGCTGGCGGTGTTACTTTTTCCAAACATCACGCGCAGCTTCGG
GGAGTCCTTTCAAGCCTTTAGCTACGTCAACGAAGTGCCgcatttctctt
tcctcgacAAGCTGAGCAACCAGTGGGTCGGTGCCACGGCCATGTGGGCC
GCCCAGGGGAAGATAAAAAAGAAGTACAACATCGCAGACGAACGCACAGC
CCTATTCGACGCGTTGCAAAGATGGACccgggaggtgggagagaagcCGT
TCCTGGGAGGGACTCAGCCCAACGTCGGCGACCTGGGTGTCTATGCGTGC
ATTCACGCCATAGAAGGGTTGGACGCGTTCAAGGATTTGATGGCGAACAC
GGACATCAGTGAGTGGTACACGAGAGTGGAGCATGCGATTGGAGCTTCCT
CTTGTGTTCGAGCTGAgtgagaggaggacaggagagaaggagagcgacCA
TAATAAAAACGTCATAaagcgtcctcgtcctgaTAAAGAAATTGCATCTG
ATCCTAGCTGAGTAAGAATGAGACG
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Coding sequence (CDS) from alignment at CM002465.1:741011..742385+

>rna5333 ID=rna5333|Name=rna5333|organism=Nannochloropsis gaditana|type=CDS|length=1197bp|location=Sequence derived from alignment at CM002465.1:741011..742385+ (Nannochloropsis gaditana)
ATGTCGCTCCGTCGCGCTCTCGGCATCAGTCACATCGCACGCAGTCACCG
CGTGGCCCTCGTCATGCCAGATGCATCGACAGCGTCATATTTCCCTGCCT
GTGCGAGTGGCCGGCGCTCTTTCTACAGCACTAGCGGGAGAAAGCAGAGC
AAACGAAGAGACTACCGAGGGCCCTTGCTCGTGGGTGGCTCCTTGGTGGG
AGCATCCACGATCCAATGTTACCTTCACCATCGCGCATTCAGTAGCCCTA
CTGTCCTAGGACCAAACCAAGCACGCAATCAACTCATTGTATCTGCTTCG
TCGGTGACAGCAATAGGGGCAGCGGCTGCAGCAGCCCTTGCATTTTCATC
GACCTCGATGGCCGCAGCATCCGCCGCTGCCCCGAGTACCGTACCGACAG
CCTTGCAGGCATCGAATGCGATCAGCCCAACCCAAGATCTTCAGTCCCAG
CCAGCATCTCTAAACCCCTTGGAGGGCCTTCGGATCACTTTGTATCAGTA
TAAAATCTGCCCCTTCTGCTGCAAAGTCAAGGCCGTGCTGGACTTCTACA
AGGTCCCGTACGAAACGTTAGACGTAAATCCACTCACCAAAGCCGAAATC
AAGTTTTCATCTGACTACCGCAAAGTGCCTATTGCGCGCCTAGGTCAAGA
AGTAGTGCGTGACTCCCCGGTAATCGTGAAGAGGATTGCGGACATGCTCT
ACGCGGCCCGCGTGGCCCCAACCAGAGACTTGGACGTTTTCTTCTCTCCA
GACGCCATGCGCTGGGCCGAATGGGCAGACAAGGAGCTGGCGGTGTTACT
TTTTCCAAACATCACGCGCAGCTTCGGGGAGTCCTTTCAAGCCTTTAGCT
ACGTCAACGAAGTGCCgcatttctctttcctcgacAAGCTGAGCAACCAG
TGGGTCGGTGCCACGGCCATGTGGGCCGCCCAGGGGAAGATAAAAAAGAA
GTACAACATCGCAGACGAACGCACAGCCCTATTCGACGCGTTGCAAAGAT
GGACccgggaggtgggagagaagcCGTTCCTGGGAGGGACTCAGCCCAAC
GTCGGCGACCTGGGTGTCTATGCGTGCATTCACGCCATAGAAGGGTTGGA
CGCGTTCAAGGATTTGATGGCGAACACGGACATCAGTGAGTGGTACACGA
GAGTGGAGCATGCGATTGGAGCTTCCTCTTGTGTTCGAGCTGAgtga
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Synonyms
Publications