EWM25410.1, cds5320 (CDS) Nannochloropsis gaditana

Overview
NameEWM25410.1
Unique Namecds5320
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:741084..742280 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25410.1
ProductGlutaredoxin
Orig transcript idgnl|cribi|Naga_100005g132.6704.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:741084..742280 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0015035protein disulfide oxidoreductase activity
GO:0009055electron transfer activity
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0019725cellular homeostasis
GO:0045454cell redox homeostasis
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR002109Glutaredoxin
IPR011767GLR_AS
IPR012336Thioredoxin-like_fold
IPR004046GST_C
IPR004045Glutathione_S-Trfase_N
IPR010987Glutathione-S-Trfase_C-like
Homology
BLAST of EWM25410.1 vs. NCBI_GenBank
Match: gi|585107171|gb|EWM25410.1| (Glutaredoxin [Nannochloropsis gaditana])

HSP 1 Score: 822.772 bits (2124), Expect = 0.000e+0
Identity = 398/398 (100.00%), Postives = 398/398 (100.00%), Query Frame = 0
Query:    1 MSLRRALGISHIARSHRVALVMPDASTASYFPACASGRRSFYSTSGRKQSKRRDYRGPLLVGGSLVGASTIQCYLHHRAFSSPTVLGPNQARNQLIVSASSVTAIGAAAAAALAFSSTSMAAASAAAPSTVPTALQASNAISPTQDLQSQPASLNPLEGLRITLYQYKICPFCCKVKAVLDFYKVPYETLDVNPLTKAEIKFSSDYRKVPIARLGQEVVRDSPVIVKRIADMLYAARVAPTRDLDVFFSPDAMRWAEWADKELAVLLFPNITRSFGESFQAFSYVNEVPHFSFLDKLSNQWVGATAMWAAQGKIKKKYNIADERTALFDALQRWTREVGEKPFLGGTQPNVGDLGVYACIHAIEGLDAFKDLMANTDISEWYTRVEHAIGASSCVRAE 398
            MSLRRALGISHIARSHRVALVMPDASTASYFPACASGRRSFYSTSGRKQSKRRDYRGPLLVGGSLVGASTIQCYLHHRAFSSPTVLGPNQARNQLIVSASSVTAIGAAAAAALAFSSTSMAAASAAAPSTVPTALQASNAISPTQDLQSQPASLNPLEGLRITLYQYKICPFCCKVKAVLDFYKVPYETLDVNPLTKAEIKFSSDYRKVPIARLGQEVVRDSPVIVKRIADMLYAARVAPTRDLDVFFSPDAMRWAEWADKELAVLLFPNITRSFGESFQAFSYVNEVPHFSFLDKLSNQWVGATAMWAAQGKIKKKYNIADERTALFDALQRWTREVGEKPFLGGTQPNVGDLGVYACIHAIEGLDAFKDLMANTDISEWYTRVEHAIGASSCVRAE
Sbjct:    1 MSLRRALGISHIARSHRVALVMPDASTASYFPACASGRRSFYSTSGRKQSKRRDYRGPLLVGGSLVGASTIQCYLHHRAFSSPTVLGPNQARNQLIVSASSVTAIGAAAAAALAFSSTSMAAASAAAPSTVPTALQASNAISPTQDLQSQPASLNPLEGLRITLYQYKICPFCCKVKAVLDFYKVPYETLDVNPLTKAEIKFSSDYRKVPIARLGQEVVRDSPVIVKRIADMLYAARVAPTRDLDVFFSPDAMRWAEWADKELAVLLFPNITRSFGESFQAFSYVNEVPHFSFLDKLSNQWVGATAMWAAQGKIKKKYNIADERTALFDALQRWTREVGEKPFLGGTQPNVGDLGVYACIHAIEGLDAFKDLMANTDISEWYTRVEHAIGASSCVRAE 398          
BLAST of EWM25410.1 vs. NCBI_GenBank
Match: gi|299471554|emb|CBN80040.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 298.516 bits (763), Expect = 1.500e-96
Identity = 140/229 (61.14%), Postives = 171/229 (74.67%), Query Frame = 0
Query:  157 LEGLRITLYQYKICPFCCKVKAVLDFYKVPYETLDVNPLTKAEIKFSSDYRKVPIARLGQEVVRDSPVIVKRIADMLYAARVAPTRDLDVFFSPDAMRWAEWADKELAVLLFPNITRSFGESFQAFSYVNEVPHFSFLDKLSNQWVGATAMWAAQGKIKKKYNIADERTALFDALQRWT---REVGEKPFLGGTQPNVGDLGVYACIHAIEGLDAFKDLMANTDISEWY 382
            LEG  IT+YQYKICPFC K+K V+DF  +PY   +VNPLTK EIKFS DYRKVPI R+G E+ +DSPVI+  +   L   +V    +  VF S DA +WAEWADK+LAVLLFPN+TR+F ES+QAFSYVN+V  FS +DK+SNQ +G+ AMWAAQGKIKKKYNI DER ALF A++ WT   REV + PF GG +PN+GDL V+ CI AIEGLD  KD++A   +  WY
Sbjct:   30 LEGEDITVYQYKICPFCNKLKVVMDFLGIPYSVTEVNPLTKKEIKFSEDYRKVPIVRMGGELFKDSPVIIDELIARLRETKVMSDEEHAVFCSSDAKKWAEWADKQLAVLLFPNLTRNFSESYQAFSYVNDVDTFSMMDKISNQVIGSAAMWAAQGKIKKKYNIDDEREALFSAIKDWTDALREV-DGPFFGGDRPNLGDLCVFGCIRAIEGLDTHKDVLARQGVGAWY 257          
BLAST of EWM25410.1 vs. NCBI_GenBank
Match: gi|922857313|gb|KOO25571.1| (hypothetical protein Ctob_008578 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 278.87 bits (712), Expect = 1.246e-88
Identity = 133/227 (58.59%), Postives = 163/227 (71.81%), Query Frame = 0
Query:  162 ITLYQYKICPFCCKVKAVLDFYKVPYETLDVNPLTKAEIK-FSSDYRKVPIARLGQEVVRDSPVIVKRIADMLYAARVAPTRDLDVFFSPDAMRWAEWADKELAVLLFPNITRSFGESFQAFSYVNEVPHFSFLDKLSNQWVGATAMWAAQGKIKKKYNIADERTALFDALQRWTRE-VGEKPFLGGTQPNVGDLGVYACIHAIEGLDAFKDLMANTDISEWYTRVE 386
            + +YQY+ICPFC KVKA+LD Y+VPYET +VNPLTK EIK +S  YRKVPIA+LG E V DS VI + + D +  A V   + L  F SP A+ WA+W+D++ AVLLFPNITRSF ES+QAF YV  VPHFS LDK+SNQ +G+  MW AQGKIKKKY I DER A+   +  W  E VG KPF GG QPN  D+ V+ C+ AI+  DA+K++MA T I  WY RVE
Sbjct:   45 VLIYQYEICPFCNKVKALLDLYRVPYETTEVNPLTKGEIKAWSGGYRKVPIAKLGDEQVNDSGVISQALLDRMGTAGVLDAKQLAEFRSPKALEWAKWSDEKFAVLLFPNITRSFSESYQAFGYVMSVPHFSMLDKVSNQIIGSFFMWMAQGKIKKKYGIDDERAAVVAGINHWLNEGVGSKPFAGGKQPNFADVCVFGCLKAIDRTDAYKEIMAETAIKPWYDRVE 271          
BLAST of EWM25410.1 vs. NCBI_GenBank
Match: gi|551583605|ref|XP_005777220.1| (electron carrier/ protein disulfide oxidoreductase [Emiliania huxleyi CCMP1516] >gi|485629450|gb|EOD24791.1| electron carrier/ protein disulfide oxidoreductase [Emiliania huxleyi CCMP1516])

HSP 1 Score: 251.136 bits (640), Expect = 1.021e-77
Identity = 132/240 (55.00%), Postives = 169/240 (70.42%), Query Frame = 0
Query:  162 ITLYQYKICPFCCKVKAVLDFYKVPYETLDVNPLTKAEIKFSSDYRKVPIARL-----GQ-EVVRDSPVIVKRIADMLYAARVAPTRDLDVFFSPDAMRWAEWADKELAVLLFPNITRSFGESFQAFSYVNEVPHFSFLDKLSNQWVGATAMWAAQGKIKKKYNIADERTALFDALQRWTRE-VGEKPFLGGTQPNVGDLGVYACIHAIEGLDAFKDLMANT-DISEWYTRVEHAIGASS 393
            I LYQY+ICPFC K+KA+LD + + YET+DVNPLTK EIK  S+YRKVPIA L     G+ E + DSPVI +R+ D + AA + P R    F SP AM WA+W+D +LAVLLFPNITRSFGE++QAF YV +VPHFS  D+LSNQ VGA AMW AQGKIKKKY I DER AL  A++ W  E +  + F GG  P+ GD+ VY C+ AI+   A  +++ +  +++ WY R+E A+G S 
Sbjct:   46 IRLYQYQICPFCNKIKALLDLHGLEYETVDVNPLTKKEIKPWSEYRKVPIAVLTPPAGGEPEQINDSPVIAERLLDAIDAAALRPARAAKAFRSPQAMEWAQWSDAKLAVLLFPNITRSFGEAYQAFGYVQDVPHFSTADRLSNQVVGACAMWMAQGKIKKKYAIDDERQALRGAIRTWVGEGLAGRAFAGGDAPHYGDVCVYGCLRAIDRTAAHAEILDDAPELARWYGRMEEAVGPSK 285          
BLAST of EWM25410.1 vs. NCBI_GenBank
Match: gi|551608484|ref|XP_005785506.1| (electron carrier/ protein disulfide oxidoreductase [Emiliania huxleyi CCMP1516] >gi|485638694|gb|EOD33077.1| electron carrier/ protein disulfide oxidoreductase [Emiliania huxleyi CCMP1516])

HSP 1 Score: 250.366 bits (638), Expect = 1.974e-77
Identity = 132/240 (55.00%), Postives = 169/240 (70.42%), Query Frame = 0
Query:  162 ITLYQYKICPFCCKVKAVLDFYKVPYETLDVNPLTKAEIKFSSDYRKVPIARL-----GQ-EVVRDSPVIVKRIADMLYAARVAPTRDLDVFFSPDAMRWAEWADKELAVLLFPNITRSFGESFQAFSYVNEVPHFSFLDKLSNQWVGATAMWAAQGKIKKKYNIADERTALFDALQRWTRE-VGEKPFLGGTQPNVGDLGVYACIHAIEGLDAFKDLMANT-DISEWYTRVEHAIGASS 393
            I LYQY+ICPFC K+KA+LD + + YET+DVNPLTK EIK  S+YRKVPIA L     G+ E + DSPVI +R+ D + AA + P R    F SP AM WA+W+D +LAVLLFPNITRSFGE++QAF YV +VPHFS  D+LSNQ VGA AMW AQGKIKKKY I DER AL  A++ W  E +  + F GG  P+ GD+ VY C+ AI+   A  +++ +  +++ WY R+E A+G S 
Sbjct:   46 IRLYQYQICPFCNKIKALLDLHGLEYETVDVNPLTKKEIKPWSEYRKVPIAVLTPLAGGEPEQINDSPVIAERLLDAIDAAALRPARAAKAFRSPQAMEWAQWSDAKLAVLLFPNITRSFGEAYQAFGYVQDVPHFSTADRLSNQVVGAFAMWMAQGKIKKKYAIDDERQALRGAIRTWVGEGLAGRAFAGGDAPHYGDVCVYGCLRAIDRTAAHAEILDDAPELARWYGRMEEAVGPSK 285          
BLAST of EWM25410.1 vs. NCBI_GenBank
Match: gi|1214674445|gb|OWY96711.1| (Prostaglandin E synthase [Phytophthora megakarya])

HSP 1 Score: 224.557 bits (571), Expect = 5.554e-67
Identity = 103/234 (44.02%), Postives = 150/234 (64.10%), Query Frame = 0
Query:  161 RITLYQYKICPFCCKVKAVLDFYKVPYETLDVNPLTKAEIKFSSDYRKVPIARLGQEVVRDSPVIVKRIADMLYAARVAPTRDLDVFFSPDAMRWAEWADKELAVLLFPNITRSFGESFQAFSYVNEVPHFSFLDKLSNQWVGATAMWAAQGKIKKKYNIADERTALFDALQRWTREVGEK-PFLGGTQPNVGDLGVYACIHAIEGLDAFKDLMANTDISEWYTRVEHAIGASS 393
            ++ LYQY+ CP+CCKVKAVLD+ K+PYE ++VNPL+K E K  +DY KVP+ R+  EVV DS  I+ R+ +++    VAP    +     +  +W +W D++L VL  PNI R+  E+ QAF Y      F+ +++  +++ GA  M+    + KKKYNI DER AL+ AL  W   +GEK PFLGG +PN+ DL V+  + A+ GLD + D+M  T+I  W+TR+   +GASS
Sbjct:   88 KVVLYQYEPCPYCCKVKAVLDYLKIPYEVVEVNPLSKKETKTFTDYSKVPVVRIDDEVVVDSSAIISRLRELV----VAPKTSQNEEALEEEEKWRQWVDQKLIVLTPPNIYRTVPEALQAFDYCLTEGKFTPMERRMSKYAGAVVMYLIAKRSKKKYNIDDERQALYSALDSWVGAIGEKRPFLGGDEPNMADLSVFGVLRAMNGLDTYNDMMRETNIEPWFTRMTDKVGASS 317          
BLAST of EWM25410.1 vs. NCBI_GenBank
Match: gi|294892437|ref|XP_002774063.1| (conserved hypothetical protein [Perkinsus marinus ATCC 50983] >gi|239879267|gb|EER05879.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983])

HSP 1 Score: 221.09 bits (562), Expect = 2.451e-66
Identity = 108/237 (45.57%), Postives = 152/237 (64.14%), Query Frame = 0
Query:  162 ITLYQYKICPFCCKVKAVLDFYKVPYETLDVNPLTKAEIKFSSDYRKVPIARLGQEVVRDSPVIVKRIADMLYAARVAPTRDLDVFFSPDAMRWAEWADKELAVLLFPNITRSFGESFQAFSYVNEVPHFSFLDKLSNQWVGATAMWAAQGKIKKKYNIADERTALFDALQRWTREVGEK--PFLGGTQPNVGDLGVYACIHAIEGLDAFKDLMAN-TDISEWYTRVEHAIGASSCV 395
            + +YQY+ICP+C KVKA LD+ +VPY+T+DVNPLTK EI+FS DYRKVPIA +    V DS  I+K++ ++L   R   T+ +      +  +W +W D +LAVLLFPN+TR+FGESF+AF Y+  +PH     K+ N+ +G  AMW A  KI+KKY+I DER  L   +  WT ++  +   F GG  P++ D+ VY CI ++EG      L+ N TD+  WY R+  A+  SS V
Sbjct:   21 VNIYQYEICPYCNKVKAFLDWQQVPYKTMDVNPLTKGEIRFSKDYRKVPIAFIDGVQVNDSAEIIKKLVEVL--GRENVTKQMQ---DAEISKWVDWTDNKLAVLLFPNLTRTFGESFEAFGYIMNIPHMWLPMKMVNRLLGGWAMWMANDKIRKKYDIDDEREDLLKCIDEWTLDLAARGGKFHGGPSPDLADVAVYGCIRSLEGFTTHHWLLRNHTDLLAWYNRMFRAMPKSSRV 252          
BLAST of EWM25410.1 vs. NCBI_GenBank
Match: gi|953487947|emb|CEG47964.1| (prostaglandin e [Plasmopara halstedii])

HSP 1 Score: 222.631 bits (566), Expect = 2.652e-66
Identity = 102/233 (43.78%), Postives = 151/233 (64.81%), Query Frame = 0
Query:  162 ITLYQYKICPFCCKVKAVLDFYKVPYETLDVNPLTKAEIKFSSDYRKVPIARLGQEVVRDSPVIVKRIADMLYAARVAPTRDLDVFFSPDAMRWAEWADKELAVLLFPNITRSFGESFQAFSYVNEVPHFSFLDKLSNQWVGATAMWAAQGKIKKKYNIADERTALFDALQRWTREVG-EKPFLGGTQPNVGDLGVYACIHAIEGLDAFKDLMANTDISEWYTRVEHAIGASS 393
            + LYQY+ CP+CCKVKAVLD+YK+PYE ++VNPLTK E K  +DYRKVPIAR+  EV+ DS  I+ ++ +++  ++     D +     D   W +W D++L VL  PNI R+  E+ QAF Y     +F+ L++   ++ GA  M+    + KKKYN+ DER A++ AL  W + +G E+ FLGG +PN+ DL V+  + A+ GLD + D+M  T+I  W+TR+   +GASS
Sbjct:   82 VVLYQYEPCPYCCKVKAVLDYYKIPYEVVEVNPLTKKETKAFTDYRKVPIARINNEVIVDSSAIISKLRELMNESKSLKQSD-EARVEED--HWRQWVDQKLIVLAPPNIYRTVPEALQAFDYCLTEGNFTLLERRVAKYAGAMIMYIIAKRSKKKYNVDDERQAIYSALTSWIKAIGDEREFLGGHEPNMADLSVFGVLRAMHGLDTYNDIMRETNIEPWFTRMTAKVGASS 311          
BLAST of EWM25410.1 vs. NCBI_GenBank
Match: gi|297734332|emb|CBI15579.3| (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 218.394 bits (555), Expect = 1.859e-64
Identity = 99/236 (41.95%), Postives = 154/236 (65.25%), Query Frame = 0
Query:  162 ITLYQYKICPFCCKVKAVLDFYKVPYETLDVNPLTKAEIKFSSDYRKVPIARLGQEVVRDSPVIVKRIADMLYAARVAPTRDLDVFFSPDAMRWAEWADKELAVLLFPNITRSFGESFQAFSYVNEVPHFSFLDKLSNQWVGATAMWAAQGKIKKKYNIADERTALFDALQRWTREVGEKPFLGGTQPNVGDLGVYACIHAIEGLDAFKDLMANTDISEWYTRVEHAIGASSCVRA 397
            + LYQY+ CPFC KVKA LD+Y +PY+ ++VNPL+K EIK+S DY+KVPI  +  E + DS  I+ +++D     ++ P +  D     +  +W +W D  L  +L PNI RS  E+ ++F Y+    +FSF +KL+ ++ GA AM+    K+KK++NI DER AL++A + W   +  + FLGG++PN+ DL V+  +  I  L + +D++ NT I EWYTR+E+A+G SS ++A
Sbjct:  106 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPLSKREIKWS-DYKKVPILMVNDEQLVDSSAIIDKMSD-----KILPKKSADSASDDEERKWRQWVDNHLVHVLSPNIYRSTSEALESFDYITSNGNFSFTEKLTVKYAGAAAMYFVSKKLKKRHNITDERAALYEAAETWVDGLNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVENTRIGEWYTRMENAVGESSRIKA 335          
BLAST of EWM25410.1 vs. NCBI_GenBank
Match: gi|567960943|gb|ETK86490.1| (hypothetical protein L915_08882 [Phytophthora parasitica] >gi|567989655|gb|ETL39904.1| hypothetical protein L916_08805 [Phytophthora parasitica])

HSP 1 Score: 218.009 bits (554), Expect = 2.043e-64
Identity = 101/233 (43.35%), Postives = 147/233 (63.09%), Query Frame = 0
Query:  162 ITLYQYKICPFCCKVKAVLDFYKVPYETLDVNPLTKAEIKFSSDYRKVPIARLGQEVVRDSPVIVKRIADMLYAARVAPTRDLDVFFSPDAMRWAEWADKELAVLLFPNITRSFGESFQAFSYVNEVPHFSFLDKLSNQWVGATAMWAAQGKIKKKYNIADERTALFDALQRWTREVGEK-PFLGGTQPNVGDLGVYACIHAIEGLDAFKDLMANTDISEWYTRVEHAIGASS 393
            + LYQY+ CP+CCKVKAVLD+ K+PYE ++VNPLTK E K  +DYRKVP+ R+  EVV DS  I+ R+ +++   + A + +           W +W DK+L +L  PNI R+  E+ QAF Y      F+ +++  +++ GA  M+    + KKKYNI DER AL+ AL  W   +G+K PFLGG +PN+ DL V+  + A+ GLD + D+M  T+I  W+TR+   +G SS
Sbjct:   89 VVLYQYEPCPYCCKVKAVLDYLKIPYEVVEVNPLTKKETKAFTDYRKVPVVRINDEVVVDSSAIISRLRELVEVPKDAQSEEALKE----EEEWRQWVDKKLILLTPPNIYRTVPEALQAFDYCLTEGKFTPMERRMSKYAGAVIMYLIAKRSKKKYNIDDEREALYSALNSWVDAIGDKRPFLGGDEPNMADLSVFGVLRAMHGLDTYNDMMRETNIEPWFTRMTAKVGPSS 317          
The following BLAST results are available for this feature:
BLAST of EWM25410.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107171|gb|EWM25410.1|0.000e+0100.00Glutaredoxin [Nannochloropsis gaditana][more]
gi|299471554|emb|CBN80040.1|1.500e-9661.14conserved unknown protein [Ectocarpus siliculosus][more]
gi|922857313|gb|KOO25571.1|1.246e-8858.59hypothetical protein Ctob_008578 [Chrysochromulina... [more]
gi|551583605|ref|XP_005777220.1|1.021e-7755.00electron carrier/ protein disulfide oxidoreductase... [more]
gi|551608484|ref|XP_005785506.1|1.974e-7755.00electron carrier/ protein disulfide oxidoreductase... [more]
gi|1214674445|gb|OWY96711.1|5.554e-6744.02Prostaglandin E synthase [Phytophthora megakarya][more]
gi|294892437|ref|XP_002774063.1|2.451e-6645.57conserved hypothetical protein [Perkinsus marinus ... [more]
gi|953487947|emb|CEG47964.1|2.652e-6643.78prostaglandin e [Plasmopara halstedii][more]
gi|297734332|emb|CBI15579.3|1.859e-6441.95unnamed protein product, partial [Vitis vinifera][more]
gi|567960943|gb|ETK86490.1|2.043e-6443.35hypothetical protein L915_08882 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5333rna5333Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications