rna5324, rna5324 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5324
Unique Name	rna5324
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3171
Alignment location	CM002465.1:717002..718459 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100005g121.6758.mrna
Orig protein id	gnl\|cribi\|Naga_100005g121.6758
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:717002..718459 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100005g121	gene5144	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5324	rna5324-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25464.1	cds5311	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:717002..718459+
coding sequence from alignment at CM002465.1:717002..718459+

mRNA sequence

>rna5324 ID=rna5324|Name=rna5324|organism=Nannochloropsis gaditana|type=mRNA|length=3171bp
GAGTCCCTGAGCCGGGTGTACGGGGAGGCACAGCGCCATTACATGCGGGC
CGAGTACCGGGAGGCCTTGCGCTTGCTGAACGAGGTCGTCCGCCAGGCCC
CTACCGTGCCGGACCCCTATCAGACAATGGGGCAAATCTATGAGGACCAG
GGGGAGATACAGAAAGCCGCGGAGATCAATCTGGTGGGCTGCCAATTCGG
ACCCAAAGACGCGCGGCTCTGGAAGAAGACGGGCCAAATGTTTCTGGAGC
TGGGCCGGCCCTTCTACTTGAAGGCGCAGTATTGCTTCGGCCGCGCCATC
AAGCTGGACCGGCAGGACGTGGAGGCCATCGCGGACAGGGCGCACGTCCA
GAGCCTGTGGGGCAGGGTGGACAAGGCCGTGCTGGGCTACGAGGCGGTGC
TGCGCTTGAATCCCAGCCAGCCCGAGCAATTCCTCCTCCGCCTTGCCGAG
GACTGTCTGCGCGAAGCCCGGTTCTGGGAAAAGGGGCTGGAGGCGCTGAG
TGAGGTCCTGTGTCGGGTCATGGGGGCCCTCTTTGTGGCGAAGCAGATCA
AGTTCTTGCCCGTCAAGGCCGCAGCGGCCCGGCACGTCCCCAGCCGCAAG
ATGGAGGCGGCCTACGAGGCTGCCAGCACCCTCTGCAGGCACCTGATGGG
CCTCAAACGGTACGCGGACGCCGCGGCCGTCGTCCAGGCCTTGCACCTAT
TCATTGCCAAGCTCCGGGAGCGACCGACGCGTTTTGCGGAGGAGAGCGAG
GAACAGCAGCAATTGGCCTTGCCCGTGGACCTGGTGGTTCGCTTCGGGAT
CTGTCAGCTCTACCTGGATAAATTGACCTCAGCACTGCAGTGCTTCTCGG
CCTTGCGCCAAGCCGATAGTGCCAGTGAGAACAGCAGCGGTGGGGGCAAT
CTGGCGGGGACGGGCGGGGGCAACAACCAGGGTGAGGTGGCGGGGCTGCT
GGAAGAGGTGGCTCAGGCCTTCATGGACACAGGCAAGTTCTTCCGGGCCC
TGGAGATCCTCAGGAGGCTGGACCGAGGGGGCAGCGCCGGTGCTGGTATC
GGGCAGAGACGTGCGGAAACAACGCTCCCACGGCCTGGGCGTTTGCGCGT
GAAACTGCAGATGGCCCGGTGCCTCGTGGCGCTCAATCAGTTGACGGGCG
CGGCCAGCGTGCTGGATCAGATCGAAGGGGTTCATGGGGAAGGCACATCT
GGAAAAGGACTTGGAGGGGCGAAAGGGACGACGAGGGGGGGACGGGAAGG
AACGAAAGGGTTGCGAGCGCCGGTGCGAAGGGAGGTCGTGGTGCTGCAGG
CGGCCACCGCCCGGGGTCTGAAGGAGCCAGCGAGCATGGCTGCGTGCCTC
GCCCGGACGGCCCGGGAGTTGGCTGAGATCTGTGAGGAGGGTCAAGGGAA
GGAGGCGGGCGCCGAGGAAGGAGCGGAGGGTGATGTGGAGCATGGGGGAG
GGACGGGGGATGTGCCGGGGACAGCGTCGAGCAGAGAAGGGGGTCCGCCA
GGTCCTAGTCGCCCCTGTGCGCGTCTTGTTGAAGGGGGTGGCGCTGACAC
TGGTGGTACGACTAGTGTCGAGGGCATTGATGTGACGGGGCAACGGGAGC
TGGAGGGGGAGAGGGAGGAGGAGGAGGAGGGGGAAGTGACGTGCAGCGTG
GATGCAAGAACCACCGAGTTTGAGCTTTTTTTGGAGTACGGCCTCTTGTG
TCGGGCGCTAGGACGGGACCAAGACTTTTTCTCGGTAGTCTTGACCTTAG
TAGAAATGGCGGTCTTCCAATCCAAAAGCGACTTTCGAAGGTCCCGGAGG
AACAGGGGAGCAGTGGAAGAAGAGGAGGCCGACTGGGAAGGGGAGAGGCA
ACCGGTGGAGGGGGGGGAGGTCAACGAGGGCAGGCAAGGTGGAAAGATAA
GCGAGAGGGACCAGGTGGAGGGGGAGAGAAGACGAGGCCCGATAGAGACA
GCAGGTCCTTCGGTCACGGCTGCCCCGGGCGTCGACAAGGCGGACGCGGG
CCAGGGGGCACACGAAGGAGGCAGCCTGCTCGCACACGCACAGGACTCCT
CCGCCCTCTCTGGACCAGTGTCCAGCAAATCCCCCCCTCATCAGTCCCAG
TCAGAAATTGCTGAGCTCTTGCCCCGCACCTGGCCCCGCACGCCTTTTCA
AGTCGCTTTGGAGCGCCACTTGAAGGTGCATGCCTCCCGCGTGGAGGTCC
TGACCTGGCTGGGCGAGCCCAAAGTCTACGAGGCGGCCCGGGCCCTGATC
CAGGCCTGTGTGGAGAGTGCCAGGGTCCGGGAGGCTGGCTCTTTGGCGCG
CGTGCTAGTGCAACGGAAGCACTTGCTGACGGAGGAGCATGGGCGGGAGC
TGCATGAGTACGCGCTCTCCCATGCTGTCAACGAGGATGACTACTCCTCA
GCGATCAAGTCGTGTATCGTGTCTCTTTCTGCGCTACCCACTTCGATCGA
GCGCGGCAACGCTCTCAACCGCCTGGTCAGAAAGGCCACCCGGGCAGACG
CGAACCGCGCCGTGATTCGCCGCATGGCGCACAAGACACCGGAGTCCCTC
CCTCTCGCTCTCCTGTCGGGGAACGCCTTCGCCCTTTCCCGCAACTACCA
GATGGCCCTCGACAAATTCCTTGGCGCGTACCGCATGGCGCCGTCCGAGC
CCCTGGTCACCCTTGCGGCAGCAGCCTTATTGATGCGAGTCTTGTCGCAC
CGGAAGCTTGTGGCCCGGCACGGATGCCTGGTCAAGTGTTTGGCCTTCCT
CGAGCAGTACGCCAGGTTGCGGCTAGTGCAGGGGGTGGAAGAAGACGTGT
TGAAAAGGGAGGCGGGGGATGGAGGCGGCATGGAAGACAGCAACGGCGCG
CACGGAAGGGACATGGAGGAGAGGGGAGAGCGGCTGGTCAAAGGCGCGAC
CCGGGCCCTGGAGCAAGAGGTGGTCTACAACATGGGTCGGGCGTTTCACC
AGGCGGGGCTACTGCACATGGCGGTGCCCTTCTACCAAGACGCTCTCACC
ATTTTTGACAGGTATCAAGAGGAGCTGAGAACGGTGGATGGCAAGGGACA
CGTCACACGAGAGGCGGCCTGGAACTTGGTGTGTATTTACAAGGAGGGGG
AATGCCGGGAGTTGGCGCGTCTGGTGGTGGGAAGGTATTTGAGAATGGAC
AGGGGCACGGGGATCGAATAG

protein sequence of rna5324

>rna5324-protein ID=rna5324-protein|Name=rna5324|organism=Nannochloropsis gaditana|type=polypeptide|length=485bp
MFPSSSSIKRSLSNLSPAKILRKGSNSSLSTQGSPARSLSVTEDASNNME
ATTTASTPTPSTSNTMTVPPSSGTNSSTNPHAATSRNRSHQLSSLQVEVL
EVKDLTGASAGPLYVELQLGEQRLRANVNSRRAMAAGARPEAVVFTQKKL
EDLYKENLKFKLINKESKMVLGQSQLPVKKLMIGKKFEAFFNLAPPPVAG
KRAAEVHAGPAIRLSVELMGPLRKEFRFLSDVVSKYYSTVDRTLDGAAAA
GHAAQPYVANKWTLPLLVPFGVLLLAASPFMGVALTIGLPVFLPLLLLGL
VAGLTMLIASIILALSSRAGRGRVEALVDPVIRKLTHTATGQQLLYETGP
RPSPLRIAKTFAPKGRWERLVTSLILDTIGASSYLLPVLGEFTDLAWAPL
FAVALHAMYSETSPYAHYVGLVEELLPFTDIIPTATLAWFRENGAALAKD
LHISAVTGRRAGVVGAAGAGLAEGGPGSGASHGRL

mRNA from alignment at CM002465.1:717002..718459+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5324 ID=rna5324|Name=rna5324|organism=Nannochloropsis gaditana|type=mRNA|length=1458bp|location=Sequence derived from alignment at CM002465.1:717002..718459+ (Nannochloropsis gaditana)
atgtttccctcctcatcctccatcaAACGCAGTCTCAGCAACCTCTCCCC
GGCAAAGATCTTGCGGAaaggcagcaacagcagcctGAGCACTCAGGGTT
CGCCCGCTAGAAGTCTTTCCGTCACTGAGGACGCGAGCAATAACATGGAG
GCCACCACAACCGCCAGCACACCCACTCCCAGCACTAGCAACACAATGAc
agtgcctccctcctctgggaccaacagcagcaccaACCCCCATGCTGCCA
CAAGCAGGAATCGAAGTCATCAGCTTTCATCCTTGCAAGTCGAAGTCCTG
GAAGTGAAGGATCTCACGGGAGCTTCGGCAGGTCCTCTATACGTGGAATT
ACAGCTCGGGGAACAACGCCTGCGTGCCAACGTGAACAGCCGCCGGGCCA
TGGCGGCGGGTGCCCGTCCTGAAGCCGTGGTCTTCACGCAGAAAAAGTTG
GAGGACCTCTACAAGGAGAACCTTAAGTTCAAACTGATCAACAAGGAAAG
CAAAATGGTGCTGGGGCAGAGTCAACTGCCTGTCAAGAAGCTGATGATCG
GCAAGAAGTTCGAGGCTTTCTTCAATCTGGCCCCGCCGCCCGTAGCCGGC
AAGCGCGCCGCCGAAGTCCACGCAGGGCCCGCTATCCGCCTGTCGGTCGA
GCTGATGGGGCCCCTCCGGAAAGAGTTTCGATTCCTGTCGGATGTGGTGA
GCAAGTACTACTCCACCGTGGACCGCACCTTGGACggcgccgccgcggcc
ggcCATGCCGCACAGCCCTACGTTGCGAACAAGTggaccctccccctcct
tgtcccaTTCGGGGTCCTATTGCTGGCAGCGTCCCCGTTCATGGGTGTGG
CCCTGACCATAGgcctgcccgtcttcctccccctcctcctcttggggCTG
GTGGCGGGGCTCACCATGCtcatcgcctccatcatcctcgccctctcttc
gcGCGCTGGCCGGGGCCGCGTAGAGGCCTTGGTGGACCCGGTCATCCGCA
AGCTCACGCACACGGCCACGGGCCAGCAGCTGCTTTACGAGACAGggccg
cgcccctccccgcttcgCATTGCCAAGACCTTTGCGCCCAAGGGTCGGTG
GGAGCGGTTGGTAACCTCACTCATACTGGACACGATCGgtgcctcctcct
acctcctgCCAGTGCTGGGCGAGTTCACCGACCTGGCGTGGGCCCCTCTT
TTCGCGGTGGCGCTGCACGCCATGTACAGCGAAACCTCTCCGTACGCGCA
CTACGTTGGCCTGGTCGAAGAGCTTCTTCCGTTCACGGACATCATTCCCA
CGGCAACCCTGGCATGGTTCAGGGAGAACGGCGCGGCGCTGGCGAAGGAC
CTGCACATCAGCGCTGTAacggggcggcgggcgggggttGTGGGAGCCGC
AGGCGCTGGACTTGCGGAAGGGGGCCCTGGAAGCGGTGCTAGTCACGGTC
GTCTGTGA

Coding sequence (CDS) from alignment at CM002465.1:717002..718459+

>rna5324 ID=rna5324|Name=rna5324|organism=Nannochloropsis gaditana|type=CDS|length=1458bp|location=Sequence derived from alignment at CM002465.1:717002..718459+ (Nannochloropsis gaditana)
atgtttccctcctcatcctccatcaAACGCAGTCTCAGCAACCTCTCCCC
GGCAAAGATCTTGCGGAaaggcagcaacagcagcctGAGCACTCAGGGTT
CGCCCGCTAGAAGTCTTTCCGTCACTGAGGACGCGAGCAATAACATGGAG
GCCACCACAACCGCCAGCACACCCACTCCCAGCACTAGCAACACAATGAc
agtgcctccctcctctgggaccaacagcagcaccaACCCCCATGCTGCCA
CAAGCAGGAATCGAAGTCATCAGCTTTCATCCTTGCAAGTCGAAGTCCTG
GAAGTGAAGGATCTCACGGGAGCTTCGGCAGGTCCTCTATACGTGGAATT
ACAGCTCGGGGAACAACGCCTGCGTGCCAACGTGAACAGCCGCCGGGCCA
TGGCGGCGGGTGCCCGTCCTGAAGCCGTGGTCTTCACGCAGAAAAAGTTG
GAGGACCTCTACAAGGAGAACCTTAAGTTCAAACTGATCAACAAGGAAAG
CAAAATGGTGCTGGGGCAGAGTCAACTGCCTGTCAAGAAGCTGATGATCG
GCAAGAAGTTCGAGGCTTTCTTCAATCTGGCCCCGCCGCCCGTAGCCGGC
AAGCGCGCCGCCGAAGTCCACGCAGGGCCCGCTATCCGCCTGTCGGTCGA
GCTGATGGGGCCCCTCCGGAAAGAGTTTCGATTCCTGTCGGATGTGGTGA
GCAAGTACTACTCCACCGTGGACCGCACCTTGGACggcgccgccgcggcc
ggcCATGCCGCACAGCCCTACGTTGCGAACAAGTggaccctccccctcct
tgtcccaTTCGGGGTCCTATTGCTGGCAGCGTCCCCGTTCATGGGTGTGG
CCCTGACCATAGgcctgcccgtcttcctccccctcctcctcttggggCTG
GTGGCGGGGCTCACCATGCtcatcgcctccatcatcctcgccctctcttc
gcGCGCTGGCCGGGGCCGCGTAGAGGCCTTGGTGGACCCGGTCATCCGCA
AGCTCACGCACACGGCCACGGGCCAGCAGCTGCTTTACGAGACAGggccg
cgcccctccccgcttcgCATTGCCAAGACCTTTGCGCCCAAGGGTCGGTG
GGAGCGGTTGGTAACCTCACTCATACTGGACACGATCGgtgcctcctcct
acctcctgCCAGTGCTGGGCGAGTTCACCGACCTGGCGTGGGCCCCTCTT
TTCGCGGTGGCGCTGCACGCCATGTACAGCGAAACCTCTCCGTACGCGCA
CTACGTTGGCCTGGTCGAAGAGCTTCTTCCGTTCACGGACATCATTCCCA
CGGCAACCCTGGCATGGTTCAGGGAGAACGGCGCGGCGCTGGCGAAGGAC
CTGCACATCAGCGCTGTAacggggcggcgggcgggggttGTGGGAGCCGC
AGGCGCTGGACTTGCGGAAGGGGGCCCTGGAAGCGGTGCTAGTCACGGTC
GTCTGTGA

Synonyms

Publications