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Properties
| Property Name | Value |
|---|
| Product | transcription factor iiic-gamma subunit |
| Orig transcript id | gnl|cribi|Naga_100005g120.6643.mrna |
| Orig protein id | gnl|cribi|Naga_100005g120.6643 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:712080..715250 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5323 ID=rna5323|Name=rna5323|organism=Nannochloropsis gaditana|type=mRNA|length=1678bp
GAAAGATGTCTACCTGGGTATGTACAGATTGTACTTACAAAAATCTGCCA
ACAACAGCCTTCTGTGACATGTGTACTGCCGCACGCCCTACCAGTATCGC
ATGCGATGCAAACTGCCTGAGTAATTGCCTGAAGAAAGAGGAGAACCCTG
AAGTTTTGAGTGTAGGAGGGCAACCTACGGACAAGAGCGACCAAACTGAC
TTTACGTCGGAAGCAAGAAAAGGTGAGGCTGTCAAGCATGCGCCAGCCGC
GCCACTTCCCGTGAGTGTCGAGGAGGGTGATGGCTGCAACCCTTTTTCTG
TCTTCATGTTCAGAGATGACGACGAAGGCAAAAGTGCTTCAATTCCTGCT
TTGCCGCCCAGGACAAGTATTCTCGCGTCTTCTTTGTCCCTAAAGCGGCC
GTTGAGTAAGACTGCTGTCGGACAGGGATGTGGTGGGACGTCTGCACACA
GCGTCCACGAGAAAGGTAGAGGGAAGAAGAAAGAGAAAGCAACGAAACAA
AGCAAATCCCACCACCGACCGCCGACAGGATGTAGTGGGGTCGCTTCAAA
AGATTTTGAAAATGAGAGCGAAGACCAGAAGGAAGCAACGATACTGAAAT
GGCGGCGCATTCTCGGGCCCCTGTCAACGCAGACGGAGGGGGGGGGGGCC
ACCGCGAGGAGGGGGAGGCGAGAGGGAGAGGAGCAGAGGAATGCGGCAAA
GAGAGTGAAGGAGCGGCATGGGGCGGAGAAAGGGGTGCAGCACGGTACCA
TAGGAGAGAAGGAGGAGTAGCTACCGGAGGAGCGAAGGACCTGACCGGCT
CAGTGGCTGAAGCGGTCGGAGAGGCAAGTGAAAGCGAGGCGGGCATGGGC
CCCGGATCGACGCTTCTGGGTGCCGACGCTGCCAATCTTCAGCGATTTCG
TCTCTTAGTGGCCGTCATCTTGTCCTCCCGCACGCAAGAGCAAATCGTGC
GACAGGCTATGGAGACTATCTCCCGGGAATACCCAGGGCCGCGCTTTTCC
CCTGACAGCTTTGCAGCGCTCCCATCGTCGGAGGCGCTCTCGGAGAAGTT
ATCTTTCGTCCACTGCAACAAGGTCAAGAGCAAACACATCCTCCAGTCTG
CGGCCACCATCCAGACGGAATTCGGGGGCAGGGTGCCCGGCCGGCGGGAG
GGACTTTTACGCATGGCGGGCATCGGACCCACACTGGCGCCGTTGCTCGA
ATTCCTGTTTACGCGGCTCGACGAGGGGGACAAAGCTGTAGGGAACTGGG
TTTGGAAAGCAAAGAAGGCGGGATGGGACGGGGAAGAGCGTGGCAACTCG
AATGATGTAGTGGACAGGAAGGGGGACGAGGAGGCGAAGGATGGAGGAAG
CAGGAGATCGGACCGGATAGGCGCAGCGGGCGGGAGAGCCATGTCGGATG
AAGAAGCTAACGTTGAGCAACAGGGGACTAGAGGGCGGGAAGGGCAGTGG
GAACTGCGAGAGCTGGAGCTGCATGGCTATGTGTCGGGGAGAGAGCACGG
GAGGAGCCAGCGGGTGGCGGACGTGGTGGTTATAGAAGACTAAGTTTGGG
TGCACAGGCGTGTTTGATTTGAGTGGGAACCAGCCCTTTTCTACATTTTG
CACTTCAAAGATGAAAGCGAACAGCTGTGAATAAATTGAGGGAGAGATGA
ACCCGGTTACTCTCACTTAATGGTGCGG back to topprotein sequence of rna5323 >rna5323-protein ID=rna5323-protein|Name=rna5323|organism=Nannochloropsis gaditana|type=polypeptide|length=1042bp
MRAEYREALRLLNEVVRQAPTVPDPYQTMGQIYEDQGEIQKAAEINLVGC
QFGPKDARLWKKTGQMFLELGRPFYLKAQYCFGRAIKLDRQDVEAIADRA
HVQSLWGRVDKAVLGYEAVLRLNPSQPEQFLLRLAEDCLREARFWEKGLE
ALSEVLCRVMGALFVAKQIKFLPVKAAAARHVPSRKMEAAYEAASTLCRH
LMGLKRYADAAAVVQALHLFIAKLRERPTRFAEESEEQQQLALPVDLVVR
FGICQLYLDKLTSALQCFSALRQADSASENSSGGGNLAGTGGGNNQGEVA
GLLEEVAQAFMDTGKFFRALEILRRLDRGGSAGAGIGQRRAETTLPRPGR
LRVKLQMARCLVALNQLTGAASVLDQIEGVHGEGTSGKGLGGAKGTTRGG
REGTKGLRAPVRREVVVLQAATARGLKEPASMAACLARTARELAEICEEG
QGKEAGAEEGAEGDVEHGGGTGDVPGTASSREGGPPGPSRPCARLVEGGG
ADTGGTTSVEGIDVTGQRELEGEREEEEEGEVTCSVDARTTEFELFLEYG
LLCRALGRDQDFFSVVLTLVEMAVFQSKSDFRRSRRNRGAVEEEEADWEG
ERQPVEGGEVNEGRQGGKISERDQVEGERRRGPIETAGPSVTAAPGVDKA
DAGQGAHEGGSLLAHAQDSSALSGPVSSKSPPHQSQSEIAELLPRTWPRT
PFQVALERHLKVHASRVEVLTWLGEPKVYEAARALIQACVESARVREAGS
LARVLVQRKHLLTEEHGRELHEYALSHAVNEDDYSSAIKSCIVSLSALPT
SIERGNALNRLVRKATRADANRAVIRRMAHKTPESLPLALLSGNAFALSR
NYQMALDKFLGAYRMAPSEPLVTLAAAALLMRVLSHRKLVARHGCLVKCL
AFLEQYARLRLVQGVEEDVLKREAGDGGGMEDSNGAHGRDMEERGERLVK
GATRALEQEVVYNMGRAFHQAGLLHMAVPFYQDALTIFDRYQEELRTVDG
KGHVTREAAWNLVCIYKEGECRELARLVVGRYLRMDRGTGIE back to topmRNA from alignment at CM002465.1:712080..715250- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna5323 ID=rna5323|Name=rna5323|organism=Nannochloropsis gaditana|type=mRNA|length=3171bp|location=Sequence derived from alignment at CM002465.1:712080..715250- (Nannochloropsis gaditana)
GAGTCCCTGAGCCGGGTGTACGGGGAGGCACAGCGCCATTACATGCGGGC
CGAGTACCGGGAGGCCTTGCGCTTGCTGAACGAGGTCGTCCGCCAGGCCC
CTACCGTGCCGGACCCCTATCAGACAATGGGGCAAATCTATGAGGACCAG
GGGGAGATACAGAAAGCCGCGGAGATCAATCTGGTGGGCTGCCAATTCGG
ACCCAAAGACGCGCGGCTCTGGAAGAAGACGGGCCAAATGTTTCTGGAGC
TGGGCCGGCCCTTCTACTTGAAGGCGCAGTATTGCTTCGGCCGCGCCATC
AAGCTGGACCGGCAGGACGTGGAGGCCATCGCGGACAGGGCGCACGTCCA
GAGCCTGTGGGGCAGGGTGGACAAGGCCGTGCTGGGCTACGAGGCGGTGC
TGCGCTTGAATCCCAGCCAGCCCGAGCAATTCCTCCTCCGCCTTGCCGAG
GACTGTCTGCGCGAAGCCCGGTTCTGGGAAAAGGGGCTGGAGGCGCTGAG
TGAGGTCCTGTGTCGGGTCATGGGGGCCCTCTTTGTGGCGAAGCAGATCA
AGTTCTTGCCCGTCAAGGCCGCAGCGGCCCGGCACGTCCCCAGCCGCAAG
ATGGAGGCGGCCTACGAGGCTGCCAGCACCCTCTGCAGGCACCTGATGGG
CCTCAAACGGTACGCGGACGCCGCGGCCGTCGTCCAGGCCTTGCACCTAT
TCATTGCCAAGCTCCGGGAGCGACCGACGCGTTTTGCGGAGGAGAGCGAG
GAACAGCAGCAATTGGCCTTGCCCGTGGACCTGGTGGTTCGCTTCGGGAT
CTGTCAGCTCTACCTGGATAAATTGACCTCAGCACTGCAGTGCTTCTCGG
CCTTGCGCCAAGCCGATAGTGCCAGTGAGAACAGCAGCGGTGGGGGCAAT
CTGGCGGGGACGGGCGGGGGCAACAACCAGGGTGAGGTGGCGGGGCTGCT
GGAAGAGGTGGCTCAGGCCTTCATGGACACAGGCAAGTTCTTCCGGGCCC
TGGAGATCCTCAGGAGGCTGGACCGAGGGGGCAGCGCCGGTGCTGGTATC
GGGCAGAGACGTGCGGAAACAACGCTCCCACGGCCTGGGCGTTTGCGCGT
GAAACTGCAGATGGCCCGGTGCCTCGTGGCGCTCAATCAGTTGACGGGCG
CGGCCAGCGTGCTGGATCAGATCGAAGGGGTTCATGGGGAAGGCACATCT
GGAAAAGGACTTGGAGGGGCGAAAGGGACGACGAGGGGGGGACGGGAAGG
AACGAAAGGGTTGCGAGCGCCGGTGCGAAGGGAGGTCGTGGTGCTGCAGG
CGGCCACCGCCCGGGGTCTGAAGGAGCCAGCGAGCATGGCTGCGTGCCTC
GCCCGGACGGCCCGGGAGTTGGCTGAGATCTGTGAGGAGGGTCAAGGGAA
GGAGGCGGGCGCCGAGGAAGGAGCGGAGGGTGATGTGGAGCATGGGGGAG
GGACGGGGGATGTGCCGGGGACAGCGTCGAGCAGAGAAGGGGGTCCGCCA
GGTCCTAGTCGCCCCTGTGCGCGTCTTGTTGAAGGGGGTGGCGCTGACAC
TGGTGGTACGACTAGTGTCGAGGGCATTGATGTGACGGGGCAACGGGAGC
TGGAGGGGGAGAGGGAGGAGGAGGAGGAGGGGGAAGTGACGTGCAGCGTG
GATGCAAGAACCACCGAGTTTGAGCTTTTTTTGGAGTACGGCCTCTTGTG
TCGGGCGCTAGGACGGGACCAAGACTTTTTCTCGGTAGTCTTGACCTTAG
TAGAAATGGCGGTCTTCCAATCCAAAAGCGACTTTCGAAGGTCCCGGAGG
AACAGGGGAGCAGTGGAAGAAGAGGAGGCCGACTGGGAAGGGGAGAGGCA
ACCGGTGGAGGGGGGGGAGGTCAACGAGGGCAGGCAAGGTGGAAAGATAA
GCGAGAGGGACCAGGTGGAGGGGGAGAGAAGACGAGGCCCGATAGAGACA
GCAGGTCCTTCGGTCACGGCTGCCCCGGGCGTCGACAAGGCGGACGCGGG
CCAGGGGGCACACGAAGGAGGCAGCCTGCTCGCACACGCACAGGACTCCT
CCGCCCTCTCTGGACCAGTGTCCAGCAAATCCCCCCCTCATCAGTCCCAG
TCAGAAATTGCTGAGCTCTTGCCCCGCACCTGGCCCCGCACGCCTTTTCA
AGTCGCTTTGGAGCGCCACTTGAAGGTGCATGCCTCCCGCGTGGAGGTCC
TGACCTGGCTGGGCGAGCCCAAAGTCTACGAGGCGGCCCGGGCCCTGATC
CAGGCCTGTGTGGAGAGTGCCAGGGTCCGGGAGGCTGGCTCTTTGGCGCG
CGTGCTAGTGCAACGGAAGCACTTGCTGACGGAGGAGCATGGGCGGGAGC
TGCATGAGTACGCGCTCTCCCATGCTGTCAACGAGGATGACTACTCCTCA
GCGATCAAGTCGTGTATCGTGTCTCTTTCTGCGCTACCCACTTCGATCGA
GCGCGGCAACGCTCTCAACCGCCTGGTCAGAAAGGCCACCCGGGCAGACG
CGAACCGCGCCGTGATTCGCCGCATGGCGCACAAGACACCGGAGTCCCTC
CCTCTCGCTCTCCTGTCGGGGAACGCCTTCGCCCTTTCCCGCAACTACCA
GATGGCCCTCGACAAATTCCTTGGCGCGTACCGCATGGCGCCGTCCGAGC
CCCTGGTCACCCTTGCGGCAGCAGCCTTATTGATGCGAGTCTTGTCGCAC
CGGAAGCTTGTGGCCCGGCACGGATGCCTGGTCAAGTGTTTGGCCTTCCT
CGAGCAGTACGCCAGGTTGCGGCTAGTGCAGGGGGTGGAAGAAGACGTGT
TGAAAAGGGAGGCGGGGGATGGAGGCGGCATGGAAGACAGCAACGGCGCG
CACGGAAGGGACATGGAGGAGAGGGGAGAGCGGCTGGTCAAAGGCGCGAC
CCGGGCCCTGGAGCAAGAGGTGGTCTACAACATGGGTCGGGCGTTTCACC
AGGCGGGGCTACTGCACATGGCGGTGCCCTTCTACCAAGACGCTCTCACC
ATTTTTGACAGGTATCAAGAGGAGCTGAGAACGGTGGATGGCAAGGGACA
CGTCACACGAGAGGCGGCCTGGAACTTGGTGTGTATTTACAAGGAGGGGG
AATGCCGGGAGTTGGCGCGTCTGGTGGTGGGAAGGTATTTGAGAATGGAC
AGGGGCACGGGGATCGAATAG back to topCoding sequence (CDS) from alignment at CM002465.1:712080..715250- >rna5323 ID=rna5323|Name=rna5323|organism=Nannochloropsis gaditana|type=CDS|length=3129bp|location=Sequence derived from alignment at CM002465.1:712080..715250- (Nannochloropsis gaditana)
ATGCGGGCCGAGTACCGGGAGGCCTTGCGCTTGCTGAACGAGGTCGTCCG
CCAGGCCCCTACCGTGCCGGACCCCTATCAGACAATGGGGCAAATCTATG
AGGACCAGGGGGAGATACAGAAAGCCGCGGAGATCAATCTGGTGGGCTGC
CAATTCGGACCCAAAGACGCGCGGCTCTGGAAGAAGACGGGCCAAATGTT
TCTGGAGCTGGGCCGGCCCTTCTACTTGAAGGCGCAGTATTGCTTCGGCC
GCGCCATCAAGCTGGACCGGCAGGACGTGGAGGCCATCGCGGACAGGGCG
CACGTCCAGAGCCTGTGGGGCAGGGTGGACAAGGCCGTGCTGGGCTACGA
GGCGGTGCTGCGCTTGAATCCCAGCCAGCCCGAGCAATTCCTCCTCCGCC
TTGCCGAGGACTGTCTGCGCGAAGCCCGGTTCTGGGAAAAGGGGCTGGAG
GCGCTGAGTGAGGTCCTGTGTCGGGTCATGGGGGCCCTCTTTGTGGCGAA
GCAGATCAAGTTCTTGCCCGTCAAGGCCGCAGCGGCCCGGCACGTCCCCA
GCCGCAAGATGGAGGCGGCCTACGAGGCTGCCAGCACCCTCTGCAGGCAC
CTGATGGGCCTCAAACGGTACGCGGACGCCGCGGCCGTCGTCCAGGCCTT
GCACCTATTCATTGCCAAGCTCCGGGAGCGACCGACGCGTTTTGCGGAGG
AGAGCGAGGAACAGCAGCAATTGGCCTTGCCCGTGGACCTGGTGGTTCGC
TTCGGGATCTGTCAGCTCTACCTGGATAAATTGACCTCAGCACTGCAGTG
CTTCTCGGCCTTGCGCCAAGCCGATAGTGCCAGTGAGAACAGCAGCGGTG
GGGGCAATCTGGCGGGGACGGGCGGGGGCAACAACCAGGGTGAGGTGGCG
GGGCTGCTGGAAGAGGTGGCTCAGGCCTTCATGGACACAGGCAAGTTCTT
CCGGGCCCTGGAGATCCTCAGGAGGCTGGACCGAGGGGGCAGCGCCGGTG
CTGGTATCGGGCAGAGACGTGCGGAAACAACGCTCCCACGGCCTGGGCGT
TTGCGCGTGAAACTGCAGATGGCCCGGTGCCTCGTGGCGCTCAATCAGTT
GACGGGCGCGGCCAGCGTGCTGGATCAGATCGAAGGGGTTCATGGGGAAG
GCACATCTGGAAAAGGACTTGGAGGGGCGAAAGGGACGACGAGGGGGGGA
CGGGAAGGAACGAAAGGGTTGCGAGCGCCGGTGCGAAGGGAGGTCGTGGT
GCTGCAGGCGGCCACCGCCCGGGGTCTGAAGGAGCCAGCGAGCATGGCTG
CGTGCCTCGCCCGGACGGCCCGGGAGTTGGCTGAGATCTGTGAGGAGGGT
CAAGGGAAGGAGGCGGGCGCCGAGGAAGGAGCGGAGGGTGATGTGGAGCA
TGGGGGAGGGACGGGGGATGTGCCGGGGACAGCGTCGAGCAGAGAAGGGG
GTCCGCCAGGTCCTAGTCGCCCCTGTGCGCGTCTTGTTGAAGGGGGTGGC
GCTGACACTGGTGGTACGACTAGTGTCGAGGGCATTGATGTGACGGGGCA
ACGGGAGCTGGAGGGGGAGAGGGAGGAGGAGGAGGAGGGGGAAGTGACGT
GCAGCGTGGATGCAAGAACCACCGAGTTTGAGCTTTTTTTGGAGTACGGC
CTCTTGTGTCGGGCGCTAGGACGGGACCAAGACTTTTTCTCGGTAGTCTT
GACCTTAGTAGAAATGGCGGTCTTCCAATCCAAAAGCGACTTTCGAAGGT
CCCGGAGGAACAGGGGAGCAGTGGAAGAAGAGGAGGCCGACTGGGAAGGG
GAGAGGCAACCGGTGGAGGGGGGGGAGGTCAACGAGGGCAGGCAAGGTGG
AAAGATAAGCGAGAGGGACCAGGTGGAGGGGGAGAGAAGACGAGGCCCGA
TAGAGACAGCAGGTCCTTCGGTCACGGCTGCCCCGGGCGTCGACAAGGCG
GACGCGGGCCAGGGGGCACACGAAGGAGGCAGCCTGCTCGCACACGCACA
GGACTCCTCCGCCCTCTCTGGACCAGTGTCCAGCAAATCCCCCCCTCATC
AGTCCCAGTCAGAAATTGCTGAGCTCTTGCCCCGCACCTGGCCCCGCACG
CCTTTTCAAGTCGCTTTGGAGCGCCACTTGAAGGTGCATGCCTCCCGCGT
GGAGGTCCTGACCTGGCTGGGCGAGCCCAAAGTCTACGAGGCGGCCCGGG
CCCTGATCCAGGCCTGTGTGGAGAGTGCCAGGGTCCGGGAGGCTGGCTCT
TTGGCGCGCGTGCTAGTGCAACGGAAGCACTTGCTGACGGAGGAGCATGG
GCGGGAGCTGCATGAGTACGCGCTCTCCCATGCTGTCAACGAGGATGACT
ACTCCTCAGCGATCAAGTCGTGTATCGTGTCTCTTTCTGCGCTACCCACT
TCGATCGAGCGCGGCAACGCTCTCAACCGCCTGGTCAGAAAGGCCACCCG
GGCAGACGCGAACCGCGCCGTGATTCGCCGCATGGCGCACAAGACACCGG
AGTCCCTCCCTCTCGCTCTCCTGTCGGGGAACGCCTTCGCCCTTTCCCGC
AACTACCAGATGGCCCTCGACAAATTCCTTGGCGCGTACCGCATGGCGCC
GTCCGAGCCCCTGGTCACCCTTGCGGCAGCAGCCTTATTGATGCGAGTCT
TGTCGCACCGGAAGCTTGTGGCCCGGCACGGATGCCTGGTCAAGTGTTTG
GCCTTCCTCGAGCAGTACGCCAGGTTGCGGCTAGTGCAGGGGGTGGAAGA
AGACGTGTTGAAAAGGGAGGCGGGGGATGGAGGCGGCATGGAAGACAGCA
ACGGCGCGCACGGAAGGGACATGGAGGAGAGGGGAGAGCGGCTGGTCAAA
GGCGCGACCCGGGCCCTGGAGCAAGAGGTGGTCTACAACATGGGTCGGGC
GTTTCACCAGGCGGGGCTACTGCACATGGCGGTGCCCTTCTACCAAGACG
CTCTCACCATTTTTGACAGGTATCAAGAGGAGCTGAGAACGGTGGATGGC
AAGGGACACGTCACACGAGAGGCGGCCTGGAACTTGGTGTGTATTTACAA
GGAGGGGGAATGCCGGGAGTTGGCGCGTCTGGTGGTGGGAAGGTATTTGA
GAATGGACAGGGGCACGGGGATCGAATAG back to top
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