EWM25349.1, cds5310 (CDS) Nannochloropsis gaditana

Overview
NameEWM25349.1
Unique Namecds5310
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:712080..715208 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25349.1
Producttranscription factor iiic-gamma subunit
Orig transcript idgnl|cribi|Naga_100005g120.6643.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:712080..715208 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013026TPR-contain_dom
IPR011990TPR-like_helical_dom
IPR019734TPR_repeat
Homology
[Close]
BLAST of EWM25349.1 vs. NCBI_GenBank
Match: gi|585107110|gb|EWM25349.1| (transcription factor iiic-gamma subunit [Nannochloropsis gaditana])

HSP 1 Score: 2103.56 bits (5449), Expect = 0.000e+0
Identity = 1042/1042 (100.00%), Postives = 1042/1042 (100.00%), Query Frame = 0 
Query:    1 MRAEYREALRLLNEVVRQAPTVPDPYQTMGQIYEDQGEIQKAAEINLVGCQFGPKDARLWKKTGQMFLELGRPFYLKAQYCFGRAIKLDRQDVEAIADRAHVQSLWGRVDKAVLGYEAVLRLNPSQPEQFLLRLAEDCLREARFWEKGLEALSEVLCRVMGALFVAKQIKFLPVKAAAARHVPSRKMEAAYEAASTLCRHLMGLKRYADAAAVVQALHLFIAKLRERPTRFAEESEEQQQLALPVDLVVRFGICQLYLDKLTSALQCFSALRQADSASENSSGGGNLAGTGGGNNQGEVAGLLEEVAQAFMDTGKFFRALEILRRLDRGGSAGAGIGQRRAETTLPRPGRLRVKLQMARCLVALNQLTGAASVLDQIEGVHGEGTSGKGLGGAKGTTRGGREGTKGLRAPVRREVVVLQAATARGLKEPASMAACLARTARELAEICEEGQGKEAGAEEGAEGDVEHGGGTGDVPGTASSREGGPPGPSRPCARLVEGGGADTGGTTSVEGIDVTGQRELEGEREEEEEGEVTCSVDARTTEFELFLEYGLLCRALGRDQDFFSVVLTLVEMAVFQSKSDFRRSRRNRGAVEEEEADWEGERQPVEGGEVNEGRQGGKISERDQVEGERRRGPIETAGPSVTAAPGVDKADAGQGAHEGGSLLAHAQDSSALSGPVSSKSPPHQSQSEIAELLPRTWPRTPFQVALERHLKVHASRVEVLTWLGEPKVYEAARALIQACVESARVREAGSLARVLVQRKHLLTEEHGRELHEYALSHAVNEDDYSSAIKSCIVSLSALPTSIERGNALNRLVRKATRADANRAVIRRMAHKTPESLPLALLSGNAFALSRNYQMALDKFLGAYRMAPSEPLVTLAAAALLMRVLSHRKLVARHGCLVKCLAFLEQYARLRLVQGVEEDVLKREAGDGGGMEDSNGAHGRDMEERGERLVKGATRALEQEVVYNMGRAFHQAGLLHMAVPFYQDALTIFDRYQEELRTVDGKGHVTREAAWNLVCIYKEGECRELARLVVGRYLRMDRGTGIE 1042
            MRAEYREALRLLNEVVRQAPTVPDPYQTMGQIYEDQGEIQKAAEINLVGCQFGPKDARLWKKTGQMFLELGRPFYLKAQYCFGRAIKLDRQDVEAIADRAHVQSLWGRVDKAVLGYEAVLRLNPSQPEQFLLRLAEDCLREARFWEKGLEALSEVLCRVMGALFVAKQIKFLPVKAAAARHVPSRKMEAAYEAASTLCRHLMGLKRYADAAAVVQALHLFIAKLRERPTRFAEESEEQQQLALPVDLVVRFGICQLYLDKLTSALQCFSALRQADSASENSSGGGNLAGTGGGNNQGEVAGLLEEVAQAFMDTGKFFRALEILRRLDRGGSAGAGIGQRRAETTLPRPGRLRVKLQMARCLVALNQLTGAASVLDQIEGVHGEGTSGKGLGGAKGTTRGGREGTKGLRAPVRREVVVLQAATARGLKEPASMAACLARTARELAEICEEGQGKEAGAEEGAEGDVEHGGGTGDVPGTASSREGGPPGPSRPCARLVEGGGADTGGTTSVEGIDVTGQRELEGEREEEEEGEVTCSVDARTTEFELFLEYGLLCRALGRDQDFFSVVLTLVEMAVFQSKSDFRRSRRNRGAVEEEEADWEGERQPVEGGEVNEGRQGGKISERDQVEGERRRGPIETAGPSVTAAPGVDKADAGQGAHEGGSLLAHAQDSSALSGPVSSKSPPHQSQSEIAELLPRTWPRTPFQVALERHLKVHASRVEVLTWLGEPKVYEAARALIQACVESARVREAGSLARVLVQRKHLLTEEHGRELHEYALSHAVNEDDYSSAIKSCIVSLSALPTSIERGNALNRLVRKATRADANRAVIRRMAHKTPESLPLALLSGNAFALSRNYQMALDKFLGAYRMAPSEPLVTLAAAALLMRVLSHRKLVARHGCLVKCLAFLEQYARLRLVQGVEEDVLKREAGDGGGMEDSNGAHGRDMEERGERLVKGATRALEQEVVYNMGRAFHQAGLLHMAVPFYQDALTIFDRYQEELRTVDGKGHVTREAAWNLVCIYKEGECRELARLVVGRYLRMDRGTGIE
Sbjct:    1 MRAEYREALRLLNEVVRQAPTVPDPYQTMGQIYEDQGEIQKAAEINLVGCQFGPKDARLWKKTGQMFLELGRPFYLKAQYCFGRAIKLDRQDVEAIADRAHVQSLWGRVDKAVLGYEAVLRLNPSQPEQFLLRLAEDCLREARFWEKGLEALSEVLCRVMGALFVAKQIKFLPVKAAAARHVPSRKMEAAYEAASTLCRHLMGLKRYADAAAVVQALHLFIAKLRERPTRFAEESEEQQQLALPVDLVVRFGICQLYLDKLTSALQCFSALRQADSASENSSGGGNLAGTGGGNNQGEVAGLLEEVAQAFMDTGKFFRALEILRRLDRGGSAGAGIGQRRAETTLPRPGRLRVKLQMARCLVALNQLTGAASVLDQIEGVHGEGTSGKGLGGAKGTTRGGREGTKGLRAPVRREVVVLQAATARGLKEPASMAACLARTARELAEICEEGQGKEAGAEEGAEGDVEHGGGTGDVPGTASSREGGPPGPSRPCARLVEGGGADTGGTTSVEGIDVTGQRELEGEREEEEEGEVTCSVDARTTEFELFLEYGLLCRALGRDQDFFSVVLTLVEMAVFQSKSDFRRSRRNRGAVEEEEADWEGERQPVEGGEVNEGRQGGKISERDQVEGERRRGPIETAGPSVTAAPGVDKADAGQGAHEGGSLLAHAQDSSALSGPVSSKSPPHQSQSEIAELLPRTWPRTPFQVALERHLKVHASRVEVLTWLGEPKVYEAARALIQACVESARVREAGSLARVLVQRKHLLTEEHGRELHEYALSHAVNEDDYSSAIKSCIVSLSALPTSIERGNALNRLVRKATRADANRAVIRRMAHKTPESLPLALLSGNAFALSRNYQMALDKFLGAYRMAPSEPLVTLAAAALLMRVLSHRKLVARHGCLVKCLAFLEQYARLRLVQGVEEDVLKREAGDGGGMEDSNGAHGRDMEERGERLVKGATRALEQEVVYNMGRAFHQAGLLHMAVPFYQDALTIFDRYQEELRTVDGKGHVTREAAWNLVCIYKEGECRELARLVVGRYLRMDRGTGIE 1042
[Close]
BLAST of EWM25349.1 vs. NCBI_GenBank
Match: gi|553180744|ref|XP_005853454.1| (transcription factor iiic-gamma subunit, partial [Nannochloropsis gaditana CCMP526] >gi|553191294|ref|XP_005855356.1| transcription factor iiic-gamma subunit, partial [Nannochloropsis gaditana CCMP526] >gi|422293702|gb|EKU21002.1| transcription factor iiic-gamma subunit, partial [Nannochloropsis gaditana CCMP526] >gi|422295607|gb|EKU22906.1| transcription factor iiic-gamma subunit, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 251.136 bits (640), Expect = 1.107e-74
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0 
Query:  921 KREAGDGGGMEDSNGAHGRDMEERGERLVKGATRALEQEVVYNMGRAFHQAGLLHMAVPFYQDALTIFDRYQEELRTVDGKGHVTREAAWNLVCIYKEGECRELARLVVGRYLRMDRGTGIE 1042
            KREAGDG GMEDSNGAHGRDMEERGERLVKGATRALEQEVVYNMGRAFHQAGLLHMAVPFYQDALTIFDRYQEELRTVDGKGHVTREAAWNLVCIY+EGECRELARLVVGRYLRMDRGTGIE
Sbjct:    1 KREAGDGSGMEDSNGAHGRDMEERGERLVKGATRALEQEVVYNMGRAFHQAGLLHMAVPFYQDALTIFDRYQEELRTVDGKGHVTREAAWNLVCIYREGECRELARLVVGRYLRMDRGTGIE 122
[Close]
BLAST of EWM25349.1 vs. NCBI_GenBank
Match: gi|813133389|ref|XP_012197804.1| (hypothetical protein SPRG_03817 [Saprolegnia parasitica CBS 223.65] >gi|641537346|gb|KDO31199.1| hypothetical protein SPRG_03817 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 114.005 bits (284), Expect = 4.766e-22
Identity = 80/278 (28.78%), Postives = 128/278 (46.04%), Query Frame = 0 
Query:    1 MRAEYREALRLLNEVVRQAPTVPDPYQTMGQIYEDQGEIQKAAEINLVGCQFGPKDARLWKKTGQMFLELGRPFYLKAQYCFGRAIKLDRQDVEAIADRAHVQSLWGRVDKAVLGYEAVLRLNPSQPEQFLLRLAEDCLREARFWEKGLEALSEVLCRVMGALFVAKQIKFLPVKAAAARHVPSRKMEAAYEAASTLCRHLMGLKRYADAAAVVQALHLFIAKLRERPTRFAEESEEQQQLALPVDLVVRFGICQLYLDKLTSALQCFSALRQADSAS 278
            M  +   A+ +L + +++APTVPDPY T+G IYE Q ++QKA +  L+ C     DA LW++ G+M  E+G P   +A YCF  A   D +DV  +   A V    G   +A    + +  L P       L++AE C        + ++AL   + R                   AA +  + + E    A + L    + LK+Y DA  +++A+            R     +++ Q  LP+D+VV++GICQL+L  +      F  L   D A+
Sbjct:  126 MSGDLERAIAMLKDFIKKAPTVPDPYHTLGLIYEKQHDVQKAIQFYLIACTLTSSDAALWRRVGEMAKEIGNPD--QATYCFKMACHADPKDVATLYAYAEVCKEQGDNRRAAETLKKIALLTPDD-LAIWLQVAE-CFHSNSQKAEAIDALKLCIQR-------------------AAHNDEAVQFE--LHAVNMLSDLYITLKQYPDAVTLIEAMF----------DRKKSSDDDEIQDTLPLDIVVKYGICQLFLGDIELGDTMFQILYAHDLAT 368
[Close]
BLAST of EWM25349.1 vs. NCBI_GenBank
Match: gi|635371745|emb|CCI40008.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 107.457 bits (267), Expect = 6.387e-20
Identity = 80/324 (24.69%), Postives = 145/324 (44.75%), Query Frame = 0 
Query:    4 EYREALRLLNEVVRQAPTVPDPYQTMGQIYEDQGEIQKAAEINLVGCQFGPKDARLWKKTGQMFLELGRPFYLKAQYCFGRAIKLDRQDVEAIADRAHVQSLWGRVDKAVLGYEAVLRLNPSQPEQFLLRLAEDCLREARFWEKGLEALSEVLCRVMGALFVAKQIKFLPVKAAAARHVPSRKMEAAYEAASTLCRHLMGLKRYADAAAVVQALHLFIAKLRERPTRFAEESEEQQQLALPVDLVVRFGICQLYLDKLTSALQCFSALRQADSASENSSGGGNLAGTGGGNNQGEVAGLLEEVAQAFM-DTGKFFRALEILRRL 326
            +Y +A+ +L + +++APT+PDPY T+G IYED+    KA +  L+ C   P DA LWK  G +  E       +A +CF  A K + +D +A+ +   +    G   K  + Y+ +  L P+    + +++AE     A   ++ ++AL                     ++ A A    +   ++   A + L    + LK+Y DA  ++   H      R+  T    E    +   +P+D+V+++GIC L+++++ +A   F+ L   D  S                       L  +VA+A++  +G    AL IL+ L
Sbjct:  137 QYDQAIVMLKDFIKKAPTIPDPYHTLGVIYEDRNNKAKALQFFLIACTLTPGDAELWKHVGHIAKE--EKNMQQALFCFKSACKANPKDKDAVYNYIEMCQQQGHERKLAVAYKKLALLFPNDFSMW-MQVAE-AYHAAGKNDEAIDALKTC------------------IEKATADPTIADAQQSESNAINMLADLYITLKQYQDAVQLIDDFH-----ARKSATSSQTEQNIVESSDIPLDIVIKYGICHLFMNEIETAESIFTKLYSQDVES--------------------YMDLFVDVAEAYIASSGNDVEALNILKLL 413
[Close]
BLAST of EWM25349.1 vs. NCBI_GenBank
Match: gi|635371744|emb|CCI40007.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 107.071 bits (266), Expect = 7.388e-20
Identity = 80/324 (24.69%), Postives = 145/324 (44.75%), Query Frame = 0 
Query:    4 EYREALRLLNEVVRQAPTVPDPYQTMGQIYEDQGEIQKAAEINLVGCQFGPKDARLWKKTGQMFLELGRPFYLKAQYCFGRAIKLDRQDVEAIADRAHVQSLWGRVDKAVLGYEAVLRLNPSQPEQFLLRLAEDCLREARFWEKGLEALSEVLCRVMGALFVAKQIKFLPVKAAAARHVPSRKMEAAYEAASTLCRHLMGLKRYADAAAVVQALHLFIAKLRERPTRFAEESEEQQQLALPVDLVVRFGICQLYLDKLTSALQCFSALRQADSASENSSGGGNLAGTGGGNNQGEVAGLLEEVAQAFM-DTGKFFRALEILRRL 326
            +Y +A+ +L + +++APT+PDPY T+G IYED+    KA +  L+ C   P DA LWK  G +  E       +A +CF  A K + +D +A+ +   +    G   K  + Y+ +  L P+    + +++AE     A   ++ ++AL                     ++ A A    +   ++   A + L    + LK+Y DA  ++   H      R+  T    E    +   +P+D+V+++GIC L+++++ +A   F+ L   D  S                       L  +VA+A++  +G    AL IL+ L
Sbjct:  137 QYDQAIVMLKDFIKKAPTIPDPYHTLGVIYEDRNNKAKALQFFLIACTLTPGDAELWKHVGHIAKE--EKNMQQALFCFKSACKANPKDKDAVYNYIEMCQQQGHERKLAVAYKKLALLFPNDFSMW-MQVAE-AYHAAGKNDEAIDALKTC------------------IEKATADPTIADAQQSESNAINMLADLYITLKQYQDAVQLIDDFH-----ARKSATSSQTEQNIVESSDIPLDIVIKYGICHLFMNEIETAESIFTKLYSQDVES--------------------YMDLFVDVAEAYIASSGNDVEALNILKLL 413

HSP 2 Score: 72.4034 bits (176), Expect = 3.802e-9
Identity = 72/313 (23.00%), Postives = 128/313 (40.89%), Query Frame = 0 
Query:  723 LGEPKVYEAARALIQACVESARVREAGSLARVLVQRKHLLTEEHGRELHEYALSHAVNEDDYSSAIKSCIVSLSALPTSIERGNALNRLVRKATRADANRAVIRRMAHKTPESLPLALLSGNAFALSRNYQMAL--DKFLGAYRMAPSEPLVTLAAAALLMRVLSHRKLVARHGCLVKCLAFLEQYARLRLVQGVEEDVLKREAGDGGGMEDSNGAHGRDMEERGERLVKGATRALEQEVVYNMGRAFHQAGLLHMAVPFYQDALTIFDRYQEELRTVDGKGHVTREAAWNLVCIYKEGECRELARLVVGRYL 1033
            +GE   +E A    +A  E  +   A  L   +     +L  ++  EL   AL+ A+   ++  A     +++     ++   N   R++  A     ++  + ++      + P  +L+G+    S  + ++L   +F  AY+     PLV        +     R +  R   + K  A L+QY ++R  +                  D NG     ++    RL          E  YN+GRA HQ GL H+A+  Y+  L    R  EE + +  +  + RE A+NL  IYK+    +LAR ++ +YL
Sbjct:  655 IGEAAFHELAVGTAKALTECEKHTAAIELLTDVNASDKVLEPDNRFELRFLALTIALEFGEHRMAYDCARLNILEDSNNLAYWNLFGRVITIAGTFSFHQKFLAKVLKHEATNYPAIILAGHQ---SSYWDISLMAGEFTLAYQHDKENPLVLFCLGMAFLAASMQRTIKDRQHTVAKAFALLQQYQKIRTAES-----------------DENGNTPSGIDTIYRRL----------ECWYNLGRAHHQLGLFHLAIAMYERVL----RTCEEAKQIPAEYDLARETAYNLSLIYKQSGANDLARYLMRKYL 933
[Close]
BLAST of EWM25349.1 vs. NCBI_GenBank
Match: gi|1214688645|gb|OWZ04505.1| (hypothetical protein PHMEG_00023577, partial [Phytophthora megakarya])

HSP 1 Score: 104.76 bits (260), Expect = 1.244e-19
Identity = 78/281 (27.76%), Postives = 137/281 (48.75%), Query Frame = 0 
Query:    4 EYREALRLLNEVVRQAPTVPDPYQTMGQIYEDQGEIQKAAEINLVGCQFGPKDARLWKKTGQMFLELGRPFYLKAQYCFGRAIKLDRQDVEAIADRAHVQSLWGRVDKAVLGYEAVLRLNPSQPEQFLLRLAE--DCLREARFWEKGLEALSEVLCRVMGALFVAKQIKFLPVKAAAARHVPSRKMEAA-YE--AASTLCRHLMGLKRYADAAAVVQALHLFIAKLRERPTRFAEESEEQQQL----ALPVDLVVRFGICQLYLDKLTSALQCFSALRQAD 275
            +Y EA+ LL + +++APT+PDPY T+G IYED+ +  KA +  L+ C   P+DA LWK+ G++  +     + +A +CF +A   D +D EA+   A +    G   +A   ++ +  L P+      +++AE   C  +    ++ ++AL++ + +                   AA   P+R + ++ YE  A + L    + LK+Y +A  V+  LH           R+A   +  Q       LP+D+ V++GIC L+    T+A   F+ L   D
Sbjct:  119 QYDEAITLLKDFIKKAPTIPDPYHTLGMIYEDRQDRIKALQFFLIACTLTPQDAELWKRVGRIAKDEKN--FDQALFCFKKASSADSKDKEALFSYAELCREQGDNRRAAEVFKKLTVLIPNDL-SLWIQIAEAYHCNEQE---DEAVDALTKCIEK-------------------AATLDPTRNLHSSKYELNAVNMLADLYITLKKYREAIEVIHHLH----------ARYASTQDPDQVEGDPGGLPLDIAVKYGICHLFERDFTTAESMFTHLFAQD 364
[Close]
BLAST of EWM25349.1 vs. NCBI_GenBank
Match: gi|568028300|gb|ETM02243.1| (hypothetical protein, variant 2 [Phytophthora parasitica])

HSP 1 Score: 105.916 bits (263), Expect = 1.736e-19
Identity = 81/278 (29.14%), Postives = 135/278 (48.56%), Query Frame = 0 
Query:    4 EYREALRLLNEVVRQAPTVPDPYQTMGQIYEDQGEIQKAAEINLVGCQFGPKDARLWKKTGQMFLELGRPFYLKAQYCFGRAIKLDRQDVEAIADRAHVQSLWGRVDKAVLGYEAVLRLNPSQPEQFLLRLAE--DCLREARFWEKGLEALSEVLCRVMGALFVAKQIKFLPVKAAAARHVPSRKMEAAYEAASTLCRHLMGLKRYADAAAVVQALHLFIAKLRERPTRFAEESEEQQ----QLALPVDLVVRFGICQLYLDKLTSALQCFSALRQAD 275
            +Y EA+ LL + +++APT+PDPY T+G IYED+ +  KA +  L+ C   P+DA LWK+ G++  +     + +A +CF +A   D +D EA+   A +    G   +A   ++ +  L P+      +++AE   C  +    E+ ++AL   +C       + K     P     AR++ S K E    A + L    + LKRY +A  V+  LH          +R+A   +  Q       LP+D+ V++GIC L+     +A   F+ L   D
Sbjct:  127 QYDEAITLLKDFIKKAPTIPDPYHTLGMIYEDRQDRIKALQFFLIACTLTPQDAELWKRVGRIAKDEKN--FDQALFCFKKASSADPKDKEALFSYAELCREQGDNRRAAEVFKKLTVLIPNDL-SLWIQIAEAYHCNEQE---EEAVDALK--MC-------IEKAATLDP-----ARNLHSSKYE--LNAVNMLADLYITLKRYREAIDVIHHLH----------SRYASTQDSDQVEGDPCGLPLDIAVKYGICHLFERDFATAESMFTHLFAQD 372
[Close]
BLAST of EWM25349.1 vs. NCBI_GenBank
Match: gi|567999141|gb|ETL49189.1| (hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568058891|gb|ETM55490.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|570960829|gb|ETP25808.1| hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 105.916 bits (263), Expect = 1.781e-19
Identity = 81/278 (29.14%), Postives = 135/278 (48.56%), Query Frame = 0 
Query:    4 EYREALRLLNEVVRQAPTVPDPYQTMGQIYEDQGEIQKAAEINLVGCQFGPKDARLWKKTGQMFLELGRPFYLKAQYCFGRAIKLDRQDVEAIADRAHVQSLWGRVDKAVLGYEAVLRLNPSQPEQFLLRLAE--DCLREARFWEKGLEALSEVLCRVMGALFVAKQIKFLPVKAAAARHVPSRKMEAAYEAASTLCRHLMGLKRYADAAAVVQALHLFIAKLRERPTRFAEESEEQQ----QLALPVDLVVRFGICQLYLDKLTSALQCFSALRQAD 275
            +Y EA+ LL + +++APT+PDPY T+G IYED+ +  KA +  L+ C   P+DA LWK+ G++  +     + +A +CF +A   D +D EA+   A +    G   +A   ++ +  L P+      +++AE   C  +    E+ ++AL   +C       + K     P     AR++ S K E    A + L    + LKRY +A  V+  LH          +R+A   +  Q       LP+D+ V++GIC L+     +A   F+ L   D
Sbjct:  127 QYDEAITLLKDFIKKAPTIPDPYHTLGMIYEDRQDRIKALQFFLIACTLTPQDAELWKRVGRIAKDEKN--FDQALFCFKKASSADPKDKEALFSYAELCREQGDNRRAAEVFKKLTVLIPNDL-SLWIQIAEAYHCNEQE---EEAVDALK--MC-------IEKAATLDP-----ARNLHSSKYE--LNAVNMLADLYITLKRYREAIDVIHHLH----------SRYASTQDSDQVEGDPCGLPLDIAVKYGICHLFERDFATAESMFTHLFAQD 372
[Close]
BLAST of EWM25349.1 vs. NCBI_GenBank
Match: gi|567999140|gb|ETL49188.1| (hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568028299|gb|ETM02242.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568058890|gb|ETM55489.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|570960828|gb|ETP25807.1| hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 105.531 bits (262), Expect = 2.237e-19
Identity = 81/278 (29.14%), Postives = 135/278 (48.56%), Query Frame = 0 
Query:    4 EYREALRLLNEVVRQAPTVPDPYQTMGQIYEDQGEIQKAAEINLVGCQFGPKDARLWKKTGQMFLELGRPFYLKAQYCFGRAIKLDRQDVEAIADRAHVQSLWGRVDKAVLGYEAVLRLNPSQPEQFLLRLAE--DCLREARFWEKGLEALSEVLCRVMGALFVAKQIKFLPVKAAAARHVPSRKMEAAYEAASTLCRHLMGLKRYADAAAVVQALHLFIAKLRERPTRFAEESEEQQ----QLALPVDLVVRFGICQLYLDKLTSALQCFSALRQAD 275
            +Y EA+ LL + +++APT+PDPY T+G IYED+ +  KA +  L+ C   P+DA LWK+ G++  +     + +A +CF +A   D +D EA+   A +    G   +A   ++ +  L P+      +++AE   C  +    E+ ++AL   +C       + K     P     AR++ S K E    A + L    + LKRY +A  V+  LH          +R+A   +  Q       LP+D+ V++GIC L+     +A   F+ L   D
Sbjct:  127 QYDEAITLLKDFIKKAPTIPDPYHTLGMIYEDRQDRIKALQFFLIACTLTPQDAELWKRVGRIAKDEKN--FDQALFCFKKASSADPKDKEALFSYAELCREQGDNRRAAEVFKKLTVLIPNDL-SLWIQIAEAYHCNEQE---EEAVDALK--MC-------IEKAATLDP-----ARNLHSSKYEL--NAVNMLADLYITLKRYREAIDVIHHLH----------SRYASTQDSDQVEGDPCGLPLDIAVKYGICHLFERDFATAESMFTHLFAQD 372

HSP 2 Score: 87.8113 bits (216), Expect = 7.457e-14
Identity = 57/240 (23.75%), Postives = 103/240 (42.92%), Query Frame = 0 
Query:  799 PTSIERGNALNRLVRKATRADANRAVIRRMAHKTPESLPLALLSGNAFALSRNYQMALDKFLGAYRMAPSEPLVTLAAAALLMRVLSHRKLVARHGCLVKCLAFLEQYARLRLV--QGVEEDVLKREAGDGGGMEDSNGAHGRDMEERGERLVKGATRALEQEVVYNMGRAFHQAGLLHMAVPFYQDALTIFDRYQEELRTVDGKGHVTREAAWNLVCIYKEGECRELARLVVGRYLRMD 1036
            P ++   N  +R++        ++  + ++    PES P  LL+G+  +      + + +   A++  P++PL         +     R +  R   + K  AFL+QY R R+V    +  D+ + EA                                     YN+GRA  Q GL H+A+P Y+  L  F+  +E+ R +  +  + RE A+NL  IYK+    +LAR ++ +YL ++
Sbjct:  735 PHNLGYWNLFSRVIAITGVFSWHQKFLAKLLRDDPESYPAILLAGHQSSAWDIASLTVGELTLAHQKHPNDPLTLFCIGLAFLSASMQRTINDRQHTVAKAFAFLQQYERTRIVAPSDITSDIRQVEAW------------------------------------YNIGRAHQQLGLFHLAIPMYERVLRFFEESKEQRREIPPEYLLCRETAYNLSLIYKQSGANDLARYLIAKYLTIE 938
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BLAST of EWM25349.1 vs. NCBI_GenBank
Match: gi|567999139|gb|ETL49187.1| (hypothetical protein L916_01280 [Phytophthora parasitica] >gi|568028298|gb|ETM02241.1| hypothetical protein L917_01258 [Phytophthora parasitica] >gi|568058889|gb|ETM55488.1| hypothetical protein L914_01289 [Phytophthora parasitica] >gi|570960827|gb|ETP25806.1| hypothetical protein F441_01345 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 105.531 bits (262), Expect = 2.457e-19
Identity = 81/278 (29.14%), Postives = 135/278 (48.56%), Query Frame = 0 
Query:    4 EYREALRLLNEVVRQAPTVPDPYQTMGQIYEDQGEIQKAAEINLVGCQFGPKDARLWKKTGQMFLELGRPFYLKAQYCFGRAIKLDRQDVEAIADRAHVQSLWGRVDKAVLGYEAVLRLNPSQPEQFLLRLAE--DCLREARFWEKGLEALSEVLCRVMGALFVAKQIKFLPVKAAAARHVPSRKMEAAYEAASTLCRHLMGLKRYADAAAVVQALHLFIAKLRERPTRFAEESEEQQ----QLALPVDLVVRFGICQLYLDKLTSALQCFSALRQAD 275
            +Y EA+ LL + +++APT+PDPY T+G IYED+ +  KA +  L+ C   P+DA LWK+ G++  +     + +A +CF +A   D +D EA+   A +    G   +A   ++ +  L P+      +++AE   C  +    E+ ++AL   +C       + K     P     AR++ S K E    A + L    + LKRY +A  V+  LH          +R+A   +  Q       LP+D+ V++GIC L+     +A   F+ L   D
Sbjct:  127 QYDEAITLLKDFIKKAPTIPDPYHTLGMIYEDRQDRIKALQFFLIACTLTPQDAELWKRVGRIAKDEKN--FDQALFCFKKASSADPKDKEALFSYAELCREQGDNRRAAEVFKKLTVLIPNDL-SLWIQIAEAYHCNEQE---EEAVDALK--MC-------IEKAATLDP-----ARNLHSSKYEL--NAVNMLADLYITLKRYREAIDVIHHLH----------SRYASTQDSDQVEGDPCGLPLDIAVKYGICHLFERDFATAESMFTHLFAQD 372
The following BLAST results are available for this feature:
BLAST of EWM25349.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107110|gb|EWM25349.1|0.000e+0100.00transcription factor iiic-gamma subunit [Nannochlo... [more]
gi|553180744|ref|XP_005853454.1|1.107e-7498.36transcription factor iiic-gamma subunit, partial [... [more]
gi|813133389|ref|XP_012197804.1|4.766e-2228.78hypothetical protein SPRG_03817 [Saprolegnia paras... [more]
gi|635371745|emb|CCI40008.1|6.387e-2024.69unnamed protein product [Albugo candida][more]
gi|635371744|emb|CCI40007.1|7.388e-2024.69unnamed protein product [Albugo candida][more]
gi|1214688645|gb|OWZ04505.1|1.244e-1927.76hypothetical protein PHMEG_00023577, partial [Phyt... [more]
gi|568028300|gb|ETM02243.1|1.736e-1929.14hypothetical protein, variant 2 [Phytophthora para... [more]
gi|567999141|gb|ETL49189.1|1.781e-1929.14hypothetical protein, variant 2 [Phytophthora para... [more]
gi|567999140|gb|ETL49188.1|2.237e-1929.14hypothetical protein, variant 1 [Phytophthora para... [more]
gi|567999139|gb|ETL49187.1|2.457e-1929.14hypothetical protein L916_01280 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5323rna5323Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications