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Properties
| Property Name | Value |
|---|
| Product | gamma-tocopherol methyltransferase |
| Orig transcript id | gnl|cribi|Naga_100005g102.6687.mrna |
| Orig protein id | gnl|cribi|Naga_100005g102.6687 |
| Gene | TMT |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:675369..677288 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5308 ID=rna5308|Name=rna5308|organism=Nannochloropsis gaditana|type=mRNA|length=1629bp
ATGCGGCCCGGAGACGAGGAAGAGGCGCCCCTGGTCCTTTCTCCTCGCCG
CGGAGGGCCCAGCCCGCTGGCCGGAGGGCGGGCGGCATGGTTCGGGACTT
CCCACAATGGAGCCACACAGGAAGCGCAATCCTACGGCGCCTTTGTCAAG
AGTACCGACCACAGCAGCATGGACACGATCTCGCATCAGGTCGACGATGA
TACAAGCCTACCTTCCACAAGGTTGCCTCGCCTCTTCGAAAATTGGCCCC
TGCTGGTGGAGATGCTCGCCTCGTACACGCTGGGCCTGGCGGCATTCAGC
AGCAACAGCAGCCCATGGACTGTGGGTTTGATATTTGCAGGCCTCGCACA
CGCGGCTTCCACGTCGGCGGTGAGCGGCGGGGCCGGGTCTTACTACCTCC
AGGCGAATCCTGTCTTGACGCTGGGGCAGCTAGTCCGCGGGCACCTGAGT
CTCCCGCGCGCCGTGCTCTATTGCGGCGCACAGTTCCTGGGAATCACGCT
CGCGTGCCTGACATTTGCGACGAGCACTGGGGGGGGTGCAATGCACGCCG
TGGGGTCGCTCACCTCGTGCGACGCGCTCCCCTGGGGTCACGGCCTCTTC
CTCACGACCATCTTCGCCAGCGCCTTCGCCTACGTGGCCTTGGCGGCCTG
GGACTCCATGTCCCTGGCCTTGGAAGCCTGTTGCTCCTTTTATGGCCTGG
CCACCGGCGCCGCCTACGCCGCTGCCATGGCCTCCGTGCAGAGCCGAAGC
ATCTCGTCTGGGCTCCTCAACCCCTGGGTGGGCCTGGTGGGGGTGATCTC
CTCCGCCCTTGCTCCCTCAGCGGGCAGCGACCACGCGGGCTTCGGGCACA
ATGGGCCTTCGTCCATGGCCTGCGACACCGTTTTCATCCTCGGGCCCCTG
CTGGGGGCCCTCCTGGGCTGCTTCCTCTCCTGGCTCACCAGCCTGCATGG
GAGCGAGAAGGAAGCCATGCTCCGAGCGCTCTCCCCCATCGCCCCGCTCC
TGGTCGAGACCGTCGGCGTCATGTTCCTGGTCCTCTCTCTGGGGGCGGCC
CAGCAAGGCTGGATCCCCGGGGCCTTCGCCCTCGCTCTCACCCTCTGCGC
CTGGCGGCGCTCAGGCGCCCAGTTCAATCCGAGCGTGACTCTCGCCATCT
TCCTGCTCAAGCGCCGCATGTTCCGGTGGACCAGCCTCCTCTTTTACATC
CTGGCCCACGTGGCGGGGGCCCTGTTGGGCACCTGCCTCCTGCTCCTCCT
CCCCCCGTCCCGCGAGATGGCCGCGCCCTCCCTCCTCGACACGCCCGTGG
TCCTGGGCCTGGACGAGGCGCTGCTGCTCCTCGTCTTCACCACGGCCTAC
CTGGCGGTCTTTGTCGCCAACACGGACGCAGAGTACGACGAAGGCTTCCT
CCACCCGGCGCTGATGGTGGGTTTGACCCTGACGGGGCTCCTGGGCGCGC
TGGCCGGGCGGGACGGCGACGTCCTCCTCACCGGCCTCTACAACCCGGCC
GTGACCCTGGTCGTGTGGGCCGTCGCTCGGGCCTCGGTGGGCACCGTGCT
CCTGGGCGCGAGCTTACAGCTCCTGGCGAGCGGGCTGGTCTTTGCGCTCT
TCTGGGGGAAGGCTCAGGTGTCGCTCTAG back to topprotein sequence of rna5308 >rna5308-protein ID=rna5308-protein|Name=rna5308|organism=Nannochloropsis gaditana|type=polypeptide|length=383bp
MNPAALILTCLVLAHGQHTDAFANPRSPLFGHGQCVCPPSSRENMPSICS
YTSPSTPASSTSLPRASSSSSTPASPAPRKGFLGLLDKVNPLKFREFGVG
NELKDGIAAFYDESTGIWEEVWGDHLHHGYYYTGKEKDHQKAQLDMIEES
LRFSGIGVAEESEIKRVVDVGCGIGGSSRYLARKFGAQVRGITLSPFQCR
RAQALTHKSGLEDSAKFEVADALAMPFSEKSFDLVWSMESGEHMPDKRRF
VKELVRVAAPGGRVIIVTWCHRNLKPEERLTRFERGLLKLINSIYFLPPW
VSMDAYVALAQEEGLTEIKTADWTRQVKPFWPAVLRSCLNLKSIKVLLTS
STVRKGALAILYMMLGYSTGLIRFGVITGRKPK back to topmRNA from alignment at CM002465.1:675369..677288+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5308 ID=rna5308|Name=rna5308|organism=Nannochloropsis gaditana|type=mRNA|length=1920bp|location=Sequence derived from alignment at CM002465.1:675369..677288+ (Nannochloropsis gaditana)
TCGAAGGGCTAGGGACTCCCAGGACGATATTCATCAAGAAAAGTTGTCAT
TCGCTCTCTCTCGTTCTTGGTCGTACAGGGCGATTCGCGCTACAAGGGAG
TTCTGATATGGCCATGTCCCACACCAAAGCTTCATGCATGCAGAAAAATA
ACGAGGGTGAAGCTATTTTGAAAATTTTGGGAAGGTCTGAAGTTGACGGG
GCGCGGTTGCTGGGTGTGAACTCCAAAAGTGAATCACGCGCGCGCTCAAG
CAGCTACATTGTCACAGCGACTCGCTCGACATATACAGTACACCATGACA
CCAGGAAACCTTcacgctccctttccctccgcgccTTTCTCATTCCGGGT
CTCATCCTGCTAATTTGTTATATTTTCAGGTGCAAACAGTCCCACTGGCC
ACCGGTAAAGGCCATCTATGAACCCCGCCGCTTTGATTCTGACCTGTCTT
GTGTTGGCACACGGACAGCATACGGATGCCTTCGCCAACCCTAGAAGCCC
TCTGTTCGGACACGGCCAATGCGTTTGCCCTCCCAGCTCCCGCGAAAATA
TGCCTTCGATATGTTCCTacacctctccttccactcctGCTTCTAGCACG
TCGTTACCTCGtgcatcctcgtcttcctctacGCCCGCCTCACCTGCTCC
TCGGAAGGGGTTTCTCGGCCTGCTTGATAAAGTCAATCCACTGAAGTTTC
GTGAGTTTGGCGTGGGCAATGAACTCAAGGATGGCATTGCAGCCTTCTAT
GATGAGAGCACCGGGATTTGGGAGGAAGTGTGGGGCGACCACCTGCACCA
CGGATACTACTACacgggcaaggagaaagatCACCAAAAAGCTCAGCTGG
ACATGATCGAGGAGTCGCTCCGATTTTCCGGGATAGGAGTCGCGGAAGAG
AGCGAAATAAAGCGTGTGGTCGATGTGGGATGTGGGATAGGCGGCTCCTC
CCGGTACTTGGCGCGGAAATTCGGTGCTCAAGTCCGAGGCATAACCCTAT
CGCCCTTCCAGTGCCGGCGTGCCCAGGCGTTGACGCACAAGTCTGGGCTG
GAGGACTCGGCGAAGTTCGAGGTGGCAGACGCCCTGGCGATGCCCTTCTC
CGAGAAGAGCTTTGACTTGGTGTGGTCGATGGAAAGCGGGGAGCACATGC
CGGACAAGCGCCGGTTCGTGAAGGAGCTGGTCCGCGTGGCCGCCCCCGGG
GGCCGGGTCATCATCGTCACCTGGTGCCACCGAAACCTGAAGCCGGAGGA
GCGCCTGACCAGGTTCGAGAGAGGGCTGCTCAAGCTGATCAACAGCATCT
ACTTCCTGCCGCCCTGGGTCTCCATGGACGCCTACGTGGCCttggcgcag
gaggagggactgacGGAAATCAAGACCGCAGACTGGACCCGGCAGGTCAA
GCCCTTCTGGCCGGCCGTGCTTCGGTCGTGCCTGAATTTGAAGAGCATCA
AGGTCCTCTTGACCTCGAGCACCGTCCGGAAAGGGGCCCTTGCCATCCTC
TACATGATGCTAGGCTACAGCACCGGACTAATCCGGTTCGGCGTTATCAC
GGGTCGAAAACCCAAATAacgcgcttccttcctctcccacgaaGTATCAT
CTGGTTCATGTGTAAATAGAGACGCCTCGCTGGTGTTGTAGGACGGTGAA
GGGAAAGCTGGTGCCTGAGTCCTTGCGCCTTGGAGATGATAGAGATTCTC
TCCCGAGGACCAGCTACTGGTGTTCAACCTTCGGGTCGCATGCGCCGGGC
CTCAGACCTTTTTCCGAGGTTGTGAAACAATCCATGTCAAGAAATAGCAC
CGCGTGCGCCTCGTCGAACGCACGGGACTGAAAAAGCGACGAGGACCGGG
GCCCCGTGGTGTACGCATACGCTTGCCCAATCACGCCTTGGCAACGAGCC
TCCCAGAAGCACTGCTTTGC back to topCoding sequence (CDS) from alignment at CM002465.1:675369..677288+ >rna5308 ID=rna5308|Name=rna5308|organism=Nannochloropsis gaditana|type=CDS|length=1152bp|location=Sequence derived from alignment at CM002465.1:675369..677288+ (Nannochloropsis gaditana)
ATGAACCCCGCCGCTTTGATTCTGACCTGTCTTGTGTTGGCACACGGACA
GCATACGGATGCCTTCGCCAACCCTAGAAGCCCTCTGTTCGGACACGGCC
AATGCGTTTGCCCTCCCAGCTCCCGCGAAAATATGCCTTCGATATGTTCC
TacacctctccttccactcctGCTTCTAGCACGTCGTTACCTCGtgcatc
ctcgtcttcctctacGCCCGCCTCACCTGCTCCTCGGAAGGGGTTTCTCG
GCCTGCTTGATAAAGTCAATCCACTGAAGTTTCGTGAGTTTGGCGTGGGC
AATGAACTCAAGGATGGCATTGCAGCCTTCTATGATGAGAGCACCGGGAT
TTGGGAGGAAGTGTGGGGCGACCACCTGCACCACGGATACTACTACacgg
gcaaggagaaagatCACCAAAAAGCTCAGCTGGACATGATCGAGGAGTCG
CTCCGATTTTCCGGGATAGGAGTCGCGGAAGAGAGCGAAATAAAGCGTGT
GGTCGATGTGGGATGTGGGATAGGCGGCTCCTCCCGGTACTTGGCGCGGA
AATTCGGTGCTCAAGTCCGAGGCATAACCCTATCGCCCTTCCAGTGCCGG
CGTGCCCAGGCGTTGACGCACAAGTCTGGGCTGGAGGACTCGGCGAAGTT
CGAGGTGGCAGACGCCCTGGCGATGCCCTTCTCCGAGAAGAGCTTTGACT
TGGTGTGGTCGATGGAAAGCGGGGAGCACATGCCGGACAAGCGCCGGTTC
GTGAAGGAGCTGGTCCGCGTGGCCGCCCCCGGGGGCCGGGTCATCATCGT
CACCTGGTGCCACCGAAACCTGAAGCCGGAGGAGCGCCTGACCAGGTTCG
AGAGAGGGCTGCTCAAGCTGATCAACAGCATCTACTTCCTGCCGCCCTGG
GTCTCCATGGACGCCTACGTGGCCttggcgcaggaggagggactgacGGA
AATCAAGACCGCAGACTGGACCCGGCAGGTCAAGCCCTTCTGGCCGGCCG
TGCTTCGGTCGTGCCTGAATTTGAAGAGCATCAAGGTCCTCTTGACCTCG
AGCACCGTCCGGAAAGGGGCCCTTGCCATCCTCTACATGATGCTAGGCTA
CAGCACCGGACTAATCCGGTTCGGCGTTATCACGGGTCGAAAACCCAAAT
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