EWM25393.1, cds5295 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25393.1 vs. NCBI_GenBank
Match: gi|585107154|gb|EWM25393.1| (gamma-tocopherol methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 793.497 bits (2048), Expect = 0.000e+0 Identity = 383/383 (100.00%), Postives = 383/383 (100.00%), Query Frame = 0 Query: 1 MNPAALILTCLVLAHGQHTDAFANPRSPLFGHGQCVCPPSSRENMPSICSYTSPSTPASSTSLPRASSSSSTPASPAPRKGFLGLLDKVNPLKFREFGVGNELKDGIAAFYDESTGIWEEVWGDHLHHGYYYTGKEKDHQKAQLDMIEESLRFSGIGVAEESEIKRVVDVGCGIGGSSRYLARKFGAQVRGITLSPFQCRRAQALTHKSGLEDSAKFEVADALAMPFSEKSFDLVWSMESGEHMPDKRRFVKELVRVAAPGGRVIIVTWCHRNLKPEERLTRFERGLLKLINSIYFLPPWVSMDAYVALAQEEGLTEIKTADWTRQVKPFWPAVLRSCLNLKSIKVLLTSSTVRKGALAILYMMLGYSTGLIRFGVITGRKPK 383 MNPAALILTCLVLAHGQHTDAFANPRSPLFGHGQCVCPPSSRENMPSICSYTSPSTPASSTSLPRASSSSSTPASPAPRKGFLGLLDKVNPLKFREFGVGNELKDGIAAFYDESTGIWEEVWGDHLHHGYYYTGKEKDHQKAQLDMIEESLRFSGIGVAEESEIKRVVDVGCGIGGSSRYLARKFGAQVRGITLSPFQCRRAQALTHKSGLEDSAKFEVADALAMPFSEKSFDLVWSMESGEHMPDKRRFVKELVRVAAPGGRVIIVTWCHRNLKPEERLTRFERGLLKLINSIYFLPPWVSMDAYVALAQEEGLTEIKTADWTRQVKPFWPAVLRSCLNLKSIKVLLTSSTVRKGALAILYMMLGYSTGLIRFGVITGRKPK Sbjct: 1 MNPAALILTCLVLAHGQHTDAFANPRSPLFGHGQCVCPPSSRENMPSICSYTSPSTPASSTSLPRASSSSSTPASPAPRKGFLGLLDKVNPLKFREFGVGNELKDGIAAFYDESTGIWEEVWGDHLHHGYYYTGKEKDHQKAQLDMIEESLRFSGIGVAEESEIKRVVDVGCGIGGSSRYLARKFGAQVRGITLSPFQCRRAQALTHKSGLEDSAKFEVADALAMPFSEKSFDLVWSMESGEHMPDKRRFVKELVRVAAPGGRVIIVTWCHRNLKPEERLTRFERGLLKLINSIYFLPPWVSMDAYVALAQEEGLTEIKTADWTRQVKPFWPAVLRSCLNLKSIKVLLTSSTVRKGALAILYMMLGYSTGLIRFGVITGRKPK 383
BLAST of EWM25393.1 vs. NCBI_GenBank
Match: gi|823263908|ref|XP_012464711.1| (PREDICTED: tocopherol O-methyltransferase, chloroplastic [Gossypium raimondii]) HSP 1 Score: 340.117 bits (871), Expect = 4.835e-112 Identity = 167/285 (58.60%), Postives = 200/285 (70.18%), Query Frame = 0 Query: 103 LKDGIAAFYDESTGIWEEVWGDHLHHGYYYTGKE---KDHQKAQLDMIEESLRFSGIGVAEESEIKRVVDVGCGIGGSSRYLARKFGAQVRGITLSPFQCRRAQALTHKSGLEDSAKFEVADALAMPFSEKSFDLVWSMESGEHMPDKRRFVKELVRVAAPGGRVIIVTWCHRNLKP-EERLTRFERGLLKLINSIYFLPPWVSMDAYVALAQEEGLTEIKTADWTRQVKPFWPAVLRSCLNLKSIKVLLTSS-TVRKGALAILYMMLGYSTGLIRFGVITGRKP 382 L++GIA FYDES+GIWE++WGDH+HHGYY G + DH+ AQ+ M+EESLRF+GI + KR+VDVGCGIGGSSRYLARK+GA+ +GITLSP Q RA AL + GL D FEVADAL PF + FDLVWSMESGEHMPDK +FVKELVRVAAPGG +I+VTWCHR+L P EE L +E+ LL I Y+LP W S YV L Q L +IK DWT V PFWPAV+RS L K LL S KGAL + M+ G+ G+I+F +I RKP Sbjct: 59 LQEGIAEFYDESSGIWEDIWGDHMHHGYYDPGSDVSGSDHRAAQIRMVEESLRFAGISEDPANRPKRIVDVGCGIGGSSRYLARKYGAKCQGITLSPVQAGRANALANAQGLADQVCFEVADALNQPFPDDQFDLVWSMESGEHMPDKPKFVKELVRVAAPGGTIIVVTWCHRDLGPSEESLQPWEQKLLNRICDAYYLPEWCSTSDYVKLFQSLSLQDIKAGDWTENVAPFWPAVIRSALTWKGFTSLLRSGLKTIKGALVMPLMIEGFQKGVIKFAIIACRKP 343
BLAST of EWM25393.1 vs. NCBI_GenBank
Match: gi|1098745558|ref|XP_018837640.1| (PREDICTED: probable tocopherol O-methyltransferase, chloroplastic isoform X4 [Juglans regia]) HSP 1 Score: 339.347 bits (869), Expect = 7.880e-112 Identity = 168/289 (58.13%), Postives = 202/289 (69.90%), Query Frame = 0 Query: 100 GNELKDGIAAFYDESTGIWEEVWGDHLHHGYYYTGKE---KDHQKAQLDMIEESLRFSGIGVAEESEIKRVVDVGCGIGGSSRYLARKFGAQVRGITLSPFQCRRAQALTHKSGLEDSAKFEVADALAMPFSEKSFDLVWSMESGEHMPDKRRFVKELVRVAAPGGRVIIVTWCHRNLKP-EERLTRFERGLLKLINSIYFLPPWVSMDAYVALAQEEGLTEIKTADWTRQVKPFWPAVLRSCLNLKSIKVLLTSS-TVRKGALAILYMMLGYSTGLIRFGVITGRKPK 383 G LK GIA FYDES+G+WE++WGDH+HHG+Y G DH+ AQ+ MIEE+LRFSGI + K VVDVGCGIGGSSRYLARKFGA+ +GITLSP Q +RA +L GL D F+VADAL PF + FDLVWSMESGEHMPDK +FV EL RVAAPGG +IIVTWCHR+L P EE L +E+ LL I + Y+LP W S YV L Q L +IK ADW++ V PFWPAV+RS L K + +L S KGALA+ M+ GY LI+F +IT RKP+ Sbjct: 55 GVVLKKGIAEFYDESSGVWEDIWGDHMHHGFYDPGSTVSVSDHRAAQIRMIEEALRFSGISEDPKKRPKSVVDVGCGIGGSSRYLARKFGAKCQGITLSPVQAQRANSLAAAQGLADKVSFQVADALDQPFPDGQFDLVWSMESGEHMPDKTKFVNELARVAAPGGTIIIVTWCHRDLAPSEESLQPWEKELLNKICNSYYLPAWCSTADYVKLLQSLSLQDIKAADWSQNVAPFWPAVIRSALTWKGLTSMLRSGLKTIKGALAMPLMIEGYKKDLIKFAIITCRKPE 343
BLAST of EWM25393.1 vs. NCBI_GenBank
Match: gi|91694293|gb|ABE41798.1| (gamma-tocopherol methyltransferase [Gossypium hirsutum]) HSP 1 Score: 338.576 bits (867), Expect = 2.011e-111 Identity = 167/286 (58.39%), Postives = 199/286 (69.58%), Query Frame = 0 Query: 103 LKDGIAAFYDESTGIWEEVWGDHLHHGYYYTGKE---KDHQKAQLDMIEESLRFSGIGVAEESEIKRVVDVGCGIGGSSRYLARKFGAQVRGITLSPFQCRRAQALTHKSGLEDSAKFEVADALAMPFSEKSFDLVWSMESGEHMPDKRRFVKELVRVAAPGGRVIIVTWCHRNLKP-EERLTRFERGLLKLINSIYFLPPWVSMDAYVALAQEEGLTEIKTADWTRQVKPFWPAVLRSCLNLKSIKVLLTSS-TVRKGALAILYMMLGYSTGLIRFGVITGRKPK 383 L++GIA FYD+S+GIWE++WGDH+HHGYY DH AQ+ MIEESLRF+GI ++ K +VDVGCGIGGSSRYLARK+GA+ +GITLSP Q RA AL GL D F+VADAL PF + FDLVWSMESGEHMPDK +FVKEL RVAAPGG +IIVTWCHR+L P EE L +E+ LL I + Y+LP W S YV L Q L +IK ADWT V PFWPAV+RS L K LL S KGAL + M+ GY G+I+F +IT RKP+ Sbjct: 59 LQEGIAEFYDQSSGIWEDIWGDHMHHGYYDPDSNVSGSDHPAAQIRMIEESLRFAGITEDPANKPKTIVDVGCGIGGSSRYLARKYGAKCQGITLSPVQAGRANALAKDQGLADKVSFQVADALNQPFPDDQFDLVWSMESGEHMPDKPKFVKELARVAAPGGTIIIVTWCHRDLGPSEEDLQPWEKKLLNRICNAYYLPEWCSTSDYVKLLQSLSLQDIKAADWTENVAPFWPAVIRSALTWKGFTSLLRSGLKTIKGALVMPLMIQGYQKGVIKFAIITCRKPE 344
BLAST of EWM25393.1 vs. NCBI_GenBank
Match: gi|1029091384|ref|XP_016705748.1| (PREDICTED: tocopherol O-methyltransferase, chloroplastic-like [Gossypium hirsutum]) HSP 1 Score: 338.576 bits (867), Expect = 2.125e-111 Identity = 166/285 (58.25%), Postives = 200/285 (70.18%), Query Frame = 0 Query: 103 LKDGIAAFYDESTGIWEEVWGDHLHHGYYYTGKE---KDHQKAQLDMIEESLRFSGIGVAEESEIKRVVDVGCGIGGSSRYLARKFGAQVRGITLSPFQCRRAQALTHKSGLEDSAKFEVADALAMPFSEKSFDLVWSMESGEHMPDKRRFVKELVRVAAPGGRVIIVTWCHRNLKP-EERLTRFERGLLKLINSIYFLPPWVSMDAYVALAQEEGLTEIKTADWTRQVKPFWPAVLRSCLNLKSIKVLLTSS-TVRKGALAILYMMLGYSTGLIRFGVITGRKP 382 L++GIA FYDES+GIWE++WGDH+HHGYY G + DH+ AQ+ M+EESLRF+GI + KR+VDVGCGIGGSSRYLARK+GA+ +GITLSP Q RA AL + GL + FEVADAL PF + FDLVWSMESGEHMPDK +FVKELVRVAAPGG +I+VTWCHR+L P EE L +E+ LL I Y+LP W S YV L Q L +IK DWT V PFWPAV+RS L K LL S KGAL + M+ G+ G+I+F +I RKP Sbjct: 59 LQEGIAEFYDESSGIWEDIWGDHMHHGYYEPGSDISGSDHRAAQIRMVEESLRFAGISEDPANRPKRIVDVGCGIGGSSRYLARKYGAKCQGITLSPVQAGRANALANAQGLAEQVCFEVADALNQPFPDDQFDLVWSMESGEHMPDKPKFVKELVRVAAPGGTIIVVTWCHRDLGPSEESLQPWEQKLLNRICDAYYLPEWCSTSDYVKLFQSLSLQDIKAGDWTENVAPFWPAVIRSALTWKGFTSLLRSGLKTIKGALVMPLMIEGFQKGVIKFAIIACRKP 343
BLAST of EWM25393.1 vs. NCBI_GenBank
Match: gi|508718311|gb|EOY10208.1| (Gamma-tocopherol methyltransferase [Theobroma cacao]) HSP 1 Score: 337.035 bits (863), Expect = 8.470e-111 Identity = 166/289 (57.44%), Postives = 201/289 (69.55%), Query Frame = 0 Query: 100 GNELKDGIAAFYDESTGIWEEVWGDHLHHGYYYTGKE---KDHQKAQLDMIEESLRFSGIGVAEESEIKRVVDVGCGIGGSSRYLARKFGAQVRGITLSPFQCRRAQALTHKSGLEDSAKFEVADALAMPFSEKSFDLVWSMESGEHMPDKRRFVKELVRVAAPGGRVIIVTWCHRNLKP-EERLTRFERGLLKLINSIYFLPPWVSMDAYVALAQEEGLTEIKTADWTRQVKPFWPAVLRSCLNLKSIKVLLTSS-TVRKGALAILYMMLGYSTGLIRFGVITGRKPK 383 G+ L+DGIA FYDES+G+WE++WGDH+HHG+Y D++ AQ+ MIEESLRF+GI K +VDVGCGIGGSSRYLARK+GA+ RGITLSP Q RA L GL D F+VADAL PF + FDLVWSMESGEHMPDK +FV ELVRVAAPGG++IIVTWCHR+L P EE L +E+ LL I + Y+LP W S YV L Q L +IK ADW++ V PFWPAV+RS L K LL S KGAL + M+ GY G+I+F VIT +KP+ Sbjct: 58 GSALRDGIAEFYDESSGLWEDIWGDHMHHGFYDPDSNVSGSDNRSAQIRMIEESLRFAGISDDPAKRPKTIVDVGCGIGGSSRYLARKYGAKCRGITLSPVQAGRANVLAEAEGLADRVSFQVADALKQPFPDGQFDLVWSMESGEHMPDKAKFVNELVRVAAPGGKIIIVTWCHRDLLPSEESLQPWEKKLLNRICNAYYLPEWCSTADYVKLLQSLSLQDIKAADWSQHVAPFWPAVIRSALTWKGFTSLLRSGLKTIKGALVMPVMIEGYKKGVIKFAVITCQKPE 346
BLAST of EWM25393.1 vs. NCBI_GenBank
Match: gi|1050590105|ref|XP_017616374.1| (PREDICTED: probable tocopherol O-methyltransferase, chloroplastic isoform X2 [Gossypium arboreum]) HSP 1 Score: 336.65 bits (862), Expect = 1.026e-110 Identity = 165/284 (58.10%), Postives = 198/284 (69.72%), Query Frame = 0 Query: 103 LKDGIAAFYDESTGIWEEVWGDHLHHGYYYTGKE---KDHQKAQLDMIEESLRFSGIGVAEESEIKRVVDVGCGIGGSSRYLARKFGAQVRGITLSPFQCRRAQALTHKSGLEDSAKFEVADALAMPFSEKSFDLVWSMESGEHMPDKRRFVKELVRVAAPGGRVIIVTWCHRNLKP-EERLTRFERGLLKLINSIYFLPPWVSMDAYVALAQEEGLTEIKTADWTRQVKPFWPAVLRSCLNLKSIKVLLTSSTVRKGALAILYMMLGYSTGLIRFGVITGRKP 382 L++GIA FYDES+GIWE++WGDH+HHGYY G + DH+ AQ+ MIEESLRF+GI + KR+VDVGCGIGGSSRYLARK+GA+ +GITLSP Q RA AL + L D FEVADAL PF + FDLVWSMESGEHMPDK +FV+ELVRVAAPGG +I+VTWCHR+L P EE L +E+ LL I Y+LP W S YV L Q L +IK DWT V PFWPAV+RS L K LL R GAL + M+ G+ G+I+F +I RKP Sbjct: 59 LQEGIAEFYDESSGIWEDIWGDHMHHGYYDPGSDVSGSDHRAAQIRMIEESLRFAGISDDPANRPKRIVDVGCGIGGSSRYLARKYGAKCQGITLSPVQAGRANALANAQVLADQVCFEVADALNQPFPDDQFDLVWSMESGEHMPDKPKFVEELVRVAAPGGTIIVVTWCHRDLGPSEESLQPWEQKLLNRICDAYYLPEWCSTSDYVKLFQSLSLQDIKAGDWTENVAPFWPAVIRSALTWKGFTSLL-----RSGALVMPLMIEGFQKGVIKFAIIACRKP 337
BLAST of EWM25393.1 vs. NCBI_GenBank
Match: gi|566199981|ref|XP_002319777.2| (hypothetical protein POPTR_0013s07440g [Populus trichocarpa] >gi|550325192|gb|EEE95700.2| hypothetical protein POPTR_0013s07440g [Populus trichocarpa]) HSP 1 Score: 336.65 bits (862), Expect = 1.340e-110 Identity = 167/294 (56.80%), Postives = 203/294 (69.05%), Query Frame = 0 Query: 98 GVGNELKDGIAAFYDESTGIWEEVWGDHLHHGYYY-----TGKEKDHQKAQLDMIEESLRFSGIGVAEESEIKRVVDVGCGIGGSSRYLARKFGAQVRGITLSPFQCRRAQALTHKSGLEDSAKFEVADALAMPFSEKSFDLVWSMESGEHMPDKRRFVKELVRVAAPGGRVIIVTWCHRNLKP-EERLTRFERGLLKLINSIYFLPPWVSMDAYVALAQEEGLTEIKTADWTRQVKPFWPAVLRSCLNLKSIKVLLTS--STVRKGALAILYMMLGYSTGLIRFGVITGRKPK 383 G ELK GIA YDES+ +WE++WGDH+HHG+YY +G + DH+ AQ MI+E+L F+G+ E K VVDVGCGIGGSSRY+ARKFGA+ +GITLSPFQ +RA AL GL D F+VADAL PF + FDLVWSMESGEHMPDKR+FV EL RVAAPG ++IVTWCHR L P EE L +E LK I Y+LP W S YV L + L +IKTADW++ V PFWPAV+RS L K + LL S T+R GAL + M+ GY GLI+F +IT RKP+ Sbjct: 57 GSTRELKQGIAELYDESSAVWEDIWGDHMHHGFYYPDEVVSGSDSDHRAAQFRMIQEALSFAGVSEDPEKGPKTVVDVGCGIGGSSRYIARKFGAKCQGITLSPFQAQRANALAETEGLADKVSFQVADALEQPFPDGQFDLVWSMESGEHMPDKRKFVGELARVAAPGATIVIVTWCHRVLGPSEESLQPWEMKHLKKICDAYYLPDWCSTADYVNLLESLSLQDIKTADWSQYVAPFWPAVIRSALTWKGLTSLLRSGMKTIR-GALVMPLMIEGYKKGLIKFAIITCRKPE 349
BLAST of EWM25393.1 vs. NCBI_GenBank
Match: gi|1098745552|ref|XP_018837638.1| (PREDICTED: tocopherol O-methyltransferase, chloroplastic isoform X2 [Juglans regia]) HSP 1 Score: 336.265 bits (861), Expect = 1.351e-110 Identity = 168/290 (57.93%), Postives = 203/290 (70.00%), Query Frame = 0 Query: 100 GNELKDGIAAFYDESTGIWEEVWGDHLHHGYYYTGKE---KDHQKAQLDMIEESLRFSGIGVAE-ESEIKRVVDVGCGIGGSSRYLARKFGAQVRGITLSPFQCRRAQALTHKSGLEDSAKFEVADALAMPFSEKSFDLVWSMESGEHMPDKRRFVKELVRVAAPGGRVIIVTWCHRNLKP-EERLTRFERGLLKLINSIYFLPPWVSMDAYVALAQEEGLTEIKTADWTRQVKPFWPAVLRSCLNLKSIKVLLTSS-TVRKGALAILYMMLGYSTGLIRFGVITGRKPK 383 G LK GIA FYDES+G+WE++WGDH+HHG+Y G DH+ AQ+ MIEE+LRFSGI + + K VVDVGCGIGGSSRYLARKFGA+ +GITLSP Q +RA +L GL D F+VADAL PF + FDLVWSMESGEHMPDK +FV EL RVAAPGG +IIVTWCHR+L P EE L +E+ LL I + Y+LP W S YV L Q L +IK ADW++ V PFWPAV+RS L K + +L S KGALA+ M+ GY LI+F +IT RKP+ Sbjct: 55 GVVLKKGIAEFYDESSGVWEDIWGDHMHHGFYDPGSTVSVSDHRAAQIRMIEEALRFSGISEKDPKKRPKSVVDVGCGIGGSSRYLARKFGAKCQGITLSPVQAQRANSLAAAQGLADKVSFQVADALDQPFPDGQFDLVWSMESGEHMPDKTKFVNELARVAAPGGTIIIVTWCHRDLAPSEESLQPWEKELLNKICNSYYLPAWCSTADYVKLLQSLSLQDIKAADWSQNVAPFWPAVIRSALTWKGLTSMLRSGLKTIKGALAMPLMIEGYKKDLIKFAIITCRKPE 344
BLAST of EWM25393.1 vs. NCBI_GenBank
Match: gi|1063457527|ref|XP_007029706.2| (PREDICTED: tocopherol O-methyltransferase, chloroplastic [Theobroma cacao]) HSP 1 Score: 336.265 bits (861), Expect = 1.575e-110 Identity = 166/289 (57.44%), Postives = 201/289 (69.55%), Query Frame = 0 Query: 100 GNELKDGIAAFYDESTGIWEEVWGDHLHHGYYYTGKE---KDHQKAQLDMIEESLRFSGIGVAEESEIKRVVDVGCGIGGSSRYLARKFGAQVRGITLSPFQCRRAQALTHKSGLEDSAKFEVADALAMPFSEKSFDLVWSMESGEHMPDKRRFVKELVRVAAPGGRVIIVTWCHRNLKP-EERLTRFERGLLKLINSIYFLPPWVSMDAYVALAQEEGLTEIKTADWTRQVKPFWPAVLRSCLNLKSIKVLLTSS-TVRKGALAILYMMLGYSTGLIRFGVITGRKPK 383 G+ L+DGIA FYDES+G+WE++WGDH+HHG+Y D++ AQ+ MIEESLRF+GI K +VDVGCGIGGSSRYLARK+GA+ RGITLSP Q RA L GL D F+VADAL PF + FDLVWSMESGEHMPDK +FV ELVRVAAPGG++IIVTWCHR+L P EE L +E+ LL I + Y+LP W S YV L Q L +IK ADW++ V PFWPAV+RS L K LL S KGAL + M+ GY G+I+F VIT +KP+ Sbjct: 58 GSVLRDGIAEFYDESSGLWEDIWGDHMHHGFYDPDSNVSGSDNRSAQIRMIEESLRFAGISDDPAKRPKTIVDVGCGIGGSSRYLARKYGAKCRGITLSPVQAGRANVLAEAEGLADRVSFQVADALKQPFPDGQFDLVWSMESGEHMPDKAKFVNELVRVAAPGGKIIIVTWCHRDLLPSEESLQPWEKKLLNRICNAYYLPEWCSTADYVKLLQSLSLQDIKAADWSQHVAPFWPAVIRSALTWKGFTSLLRSGLKTIKGALVMPVMIEGYKKGVIKFAVITCQKPE 346 The following BLAST results are available for this feature:
BLAST of EWM25393.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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