rna5293, rna5293 (mRNA) Nannochloropsis gaditana

Overview
Namerna5293
Unique Namerna5293
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1973
Alignment locationCM002465.1:637849..638676 -

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Properties
Property NameValue
ProductProtein of unknown function DUF1674
Orig transcript idgnl|cribi|Naga_100005g86.6673.mrna
Orig protein idgnl|cribi|Naga_100005g86.6673
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:637849..638676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g86gene5113Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25379.1cds5280Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5293rna5293-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5293 ID=rna5293|Name=rna5293|organism=Nannochloropsis gaditana|type=mRNA|length=1973bp
AGCGAGCACAGATCCTGACGCCACAAGCGATGACGATGGTCACGGCCGCG
CTCGACTCACACCACAGCATCGCACAGACTCGCGAGCACTATGGCGAAAC
TTTTGAGCTTCCTGCTACTGACGCAGAGTGCCGTGATAAGTTACGGCTTT
ATCGGCAAGCCTTGTTACCCGACAAAGTCAGGCGGTGAAAGGCATGCAGC
AACTACCTTGAGAATGAGGATGACCTCCGCTGGCGTAGCGCCCGATGTAT
TGACATTTAAAAATGGCTCGCCCCTTAAGTTATCACGGGCTGCCTATTTG
CAAAAACTGGCAGCCTTGACACTCGGCGGCGTCTCCCTTGCAGGAAAGTC
GGGGAGTGCGAGCGCAGTACCAGCGGCAGAGGGCCCAGACCTTAATTCTA
TTTTGTTGCAAAAGGCAGGAAAATCGGTTCGTTTTGGCGACGCCAAAGGC
AAGAAAGCCACAGTGGTCGTCAACGTGGCCTCACAATGTGCATTAACTGG
AGGAAATTATCCAGGCTTGCAAGAATTGTACGAGAAATACCATGATCAAG
GGCTCGAGATTTTAGCCTTTCCCTCCAATCAGTTTGGCTTTCAAGAACCT
GATCCTGTAGAAAAGGTGCGAAATGATATGAAGGACCGTTTTGGAGTCGA
ATTTCCCATCTACGACAAAGTGGACGTAAACGGGGGCGGGGCGCACCCCT
TGTACGCGGCCTTAAAAAAGTATGAGCCCGAGCTCTCAGGGTACTCGCCC
AAATTGTCTTGGAATTTTACGAAATTCCTCATCAACGCTGACGGAACGCC
GGTCCGCCGCTACCAGCCGGGTGTCGACCCCGAGGAGATGGAGGCCGATA
TTTTGAGCGTGCTCCAGGGGAAAAAGCTTCCTTCGGCCCGCAAGAAAAGC
TTGAACGAGTATTAGGAGGAGATAAAGAGCTTCCGTGTCATCCTTGAAGC
GGATCAGGTTTGGGTCAGTGATCTCTCTGTTTGAGCGCCACAGCAGGTAA
CACGCCAAAGAACCGAGACATACATACTTTGGTCGCCTGCGTGCGGCACT
TTGATTTCTATTCTAAATAATCTTTTACGAGGGGCTTCTATCTCTTTAGC
GAGTTGCGGCGATTTGTTTTCATCTTGAGTGAGCAGTGTCGTGAAAGCCC
GTATGCCCGGTACCCTAGGGCAAATATCAAGCTGGTCGTTTTTCTCCCAG
TGCCTCTTTTCATTGGTTATCCCTGAAGCATAAGCACGCTCTGCCCCGCA
TGTGCGCCCACTGACAGACAGGCCGCCACCTCCCTCGCTTTGCGTCCCCT
GGATGTTTGCCCCTGTCCTGTTGCCTGAGAGGAACCTGAGACGCGCCACA
CTCGCGGCCGCGCAGGTGGGCAATGTCTCTCCGTGCCGCTGGGAGCCTGG
CGCAGGTCAGCACGCACAGTATCCTGGAGATGACCTGCATGCAGTTGCAA
GGCCTGGTTAAATTTCTGAAGGAGGTTTACATGGTGACCGAGGACTAGAA
AAGGCGAGGTCCCGGGCGCTCAGGGGGCGGGCTAGGCGGCGGGGGGGGAG
AGACGGCGGCCTCACGCCTGCACTCACGGTCAGGAAACTTGGGTCTCCAT
CGAACGCCGTTATCGACGCCGATCTGATCATTTACATCCCCTGCGCAGAG
AGGGCTCCTGGGCTTCGCATCTCAAGCGTCGCGGGTGTGGCGCTTGCTGT
TTCCAGCCACTCTCTTTTCTATGCCCGCGAAGCTCCTCGAGGTATCTCCC
CTCCGACTTCCCGCCGTTAAACGGACGATGAATCAATCACTCCGCGTCAA
GCTGTCTCAGCGGAGGGTGTTTGGCTACTGCTCATCGAAGGAAAGTGCAC
AAAAAATGAAAACCACGTAAATGAAAAGTGGAGGTAGGAGTGAGGATGGA
ACCTAGGCGTGAAAGAGGAGCCACCGTGTGCATGAGAGCATGGACTAACG
TCATCTCTGAACTTCACAGGTTT
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protein sequence of rna5293

>rna5293-protein ID=rna5293-protein|Name=rna5293|organism=Nannochloropsis gaditana|type=polypeptide|length=166bp
MLSHTGSCRRSAHRLLAMCFSSAPLNRASSAGFPISSSLSPGAVSSPGCF
REERLSLRLSCHQFCSTSSLQQGAEDEAQATSPGPSNARVKEDEGGVIIE
VGTTSQSAVKKDTCGEVEEAEDEMEEMFVMGPSGRVEWGGPTRGGRHKEP
TRFGDWERKGRCTDFS
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mRNA from alignment at CM002465.1:637849..638676-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5293 ID=rna5293|Name=rna5293|organism=Nannochloropsis gaditana|type=mRNA|length=828bp|location=Sequence derived from alignment at CM002465.1:637849..638676- (Nannochloropsis gaditana)
GACCGGATTGGGGCGCTTTGCTTTAATCAGAATGATCGGAAACCCAAGTC
TGTTATTCTTGTGTCTTTTACTCACGCTAGTGCGAAAATTTTCACACAAA
ATAAGGGTGGAAACTGCGTTCCATGTTGTCGCACACTGGATCATGCCGAC
GGTCAGCTCACCGCTTATTGGCAATGTGCTTTTCCAGTGCTCCACTTAAC
CGCGCGTCGTCAGCAGGTTTTCCCATCTCCTCGTCACTCTCACCCGGCGC
CGTATCATCTCCAGGGTGCTTTCGGGAGGAGCGCCTCAGCTTGCGGTTGT
CATGCCATCAGTTTTGTAGCACAAGCAGTTTGCAGCAGGGCGCCGAAGAC
GAAGCACAAGCCACCTCACCGGGGCCAAGTAATGCTAGAGTAAAGGAAGA
CGAAGGAGGGGTGATCATTGAAGTGGGAACCACATCGCAATCGGCAGTAA
AGAAGGACACTTGCGGTGAGGTAGAGGAGGCGGAAGACGAAATGGAGGAG
ATGTTTGTGATGGGTCCTTCCGGTCGCGTTGAATGGGGTGGCCCGACGCG
CGGAGGGAGACATAAGGAGCCCACACGATTTGGGGATTGGGAACGGAAGG
GGCGATGCACCGACTTCAGCTAGATAGGGGAGTGTATAGTACTTAAGTGC
ATGGGAATATAAAGATGGGAGGAGAGGTGGTGATCGTAAAACAAAGTGTA
AGTTGGAGATAGCATGAACCATACGGCCGCATGCAGGGAACAAAACTGTG
ACGCAGCACGCGAGCCTTTTGAGCTTTACGTTAGTGTCAGTATCTGCTTT
ACTCAAATGAAACCTGTGAAGTTCAGAG
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Coding sequence (CDS) from alignment at CM002465.1:637849..638676-

>rna5293 ID=rna5293|Name=rna5293|organism=Nannochloropsis gaditana|type=CDS|length=501bp|location=Sequence derived from alignment at CM002465.1:637849..638676- (Nannochloropsis gaditana)
ATGTTGTCGCACACTGGATCATGCCGACGGTCAGCTCACCGCTTATTGGC
AATGTGCTTTTCCAGTGCTCCACTTAACCGCGCGTCGTCAGCAGGTTTTC
CCATCTCCTCGTCACTCTCACCCGGCGCCGTATCATCTCCAGGGTGCTTT
CGGGAGGAGCGCCTCAGCTTGCGGTTGTCATGCCATCAGTTTTGTAGCAC
AAGCAGTTTGCAGCAGGGCGCCGAAGACGAAGCACAAGCCACCTCACCGG
GGCCAAGTAATGCTAGAGTAAAGGAAGACGAAGGAGGGGTGATCATTGAA
GTGGGAACCACATCGCAATCGGCAGTAAAGAAGGACACTTGCGGTGAGGT
AGAGGAGGCGGAAGACGAAATGGAGGAGATGTTTGTGATGGGTCCTTCCG
GTCGCGTTGAATGGGGTGGCCCGACGCGCGGAGGGAGACATAAGGAGCCC
ACACGATTTGGGGATTGGGAACGGAAGGGGCGATGCACCGACTTCAGCTA
G
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Synonyms
Publications