EWM25379.1, cds5280 (CDS) Nannochloropsis gaditana

Overview
NameEWM25379.1
Unique Namecds5280
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:638054..638554 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25379.1
ProductProtein of unknown function DUF1674
Orig transcript idgnl|cribi|Naga_100005g86.6673.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:638054..638554 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR012875DUF1674
Homology
BLAST of EWM25379.1 vs. NCBI_GenBank
Match: gi|585107140|gb|EWM25379.1| (Protein of unknown function DUF1674 [Nannochloropsis gaditana])

HSP 1 Score: 337.035 bits (863), Expect = 4.934e-117
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
Query:    1 MLSHTGSCRRSAHRLLAMCFSSAPLNRASSAGFPISSSLSPGAVSSPGCFREERLSLRLSCHQFCSTSSLQQGAEDEAQATSPGPSNARVKEDEGGVIIEVGTTSQSAVKKDTCGEVEEAEDEMEEMFVMGPSGRVEWGGPTRGGRHKEPTRFGDWERKGRCTDFS 166
            MLSHTGSCRRSAHRLLAMCFSSAPLNRASSAGFPISSSLSPGAVSSPGCFREERLSLRLSCHQFCSTSSLQQGAEDEAQATSPGPSNARVKEDEGGVIIEVGTTSQSAVKKDTCGEVEEAEDEMEEMFVMGPSGRVEWGGPTRGGRHKEPTRFGDWERKGRCTDFS
Sbjct:    1 MLSHTGSCRRSAHRLLAMCFSSAPLNRASSAGFPISSSLSPGAVSSPGCFREERLSLRLSCHQFCSTSSLQQGAEDEAQATSPGPSNARVKEDEGGVIIEVGTTSQSAVKKDTCGEVEEAEDEMEEMFVMGPSGRVEWGGPTRGGRHKEPTRFGDWERKGRCTDFS 166          
BLAST of EWM25379.1 vs. NCBI_GenBank
Match: gi|298707113|emb|CBJ29905.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 84.7297 bits (208), Expect = 5.104e-18
Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 0
Query:  106 QSAVKKDTCGEVEE--AEDEMEEMFVMGPSGRVEWGGPTRGGRHKEPTRFGDWERKGRCTDF 165
            Q  VK D CGE+E+   ++EMEEM   GP+G+ EWGGPTRGG   EPTRFGDWERKGRC+DF
Sbjct:   71 QGPVKLDLCGEIEDDVGDEEMEEMLQEGPAGK-EWGGPTRGGVLGEPTRFGDWERKGRCSDF 131          
BLAST of EWM25379.1 vs. NCBI_GenBank
Match: gi|1214698095|gb|OWZ11198.1| (hypothetical protein PHMEG_00015815 [Phytophthora megakarya])

HSP 1 Score: 70.0922 bits (170), Expect = 7.355e-13
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 0
Query:  127 MFVMGPSGRVEWGGPTRGGRHKEPTRFGDWERKGRCTDF 165
            M  +GPSG VE+GGPTRGG+ KEPTRFGDWERKGRC+DF
Sbjct:   59 MVAIGPSG-VEYGGPTRGGKLKEPTRFGDWERKGRCSDF 96          
BLAST of EWM25379.1 vs. NCBI_GenBank
Match: gi|301109291|ref|XP_002903726.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262096729|gb|EEY54781.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 70.0922 bits (170), Expect = 8.221e-13
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 0
Query:  122 DEMEEMFVMGPSGRVEWGGPTRGGRHKEPTRFGDWERKGRCTDF 165
            ++ EE   +GP G VE+GGPTRGG+ KEPTRFGDWERKGRC+DF
Sbjct:   55 NDAEETVAIGPLG-VEYGGPTRGGKLKEPTRFGDWERKGRCSDF 97          
BLAST of EWM25379.1 vs. NCBI_GenBank
Match: gi|953499595|emb|CEG39021.1| (Uncharacterized conserved protein [Plasmopara halstedii])

HSP 1 Score: 69.3218 bits (168), Expect = 3.361e-12
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 0
Query:  112 DTCGEVEEAEDEMEEMFVMGPSGRVEWGGPTRGGRHKEPTRFGDWERKGRCTDF 165
            D   + ++ ++E  E  V+  S   E GGPTRGG+ KEPTRFGDWERKGRC+DF
Sbjct:   67 DKSNDTDDYDNEDAEETVVIDSSNYEIGGPTRGGKFKEPTRFGDWERKGRCSDF 120          
BLAST of EWM25379.1 vs. NCBI_GenBank
Match: gi|669144896|ref|XP_008608010.1| (hypothetical protein SDRG_04129 [Saprolegnia diclina VS20] >gi|530740176|gb|EQC38418.1| hypothetical protein SDRG_04129 [Saprolegnia diclina VS20])

HSP 1 Score: 68.1662 bits (165), Expect = 4.909e-12
Identity = 41/84 (48.81%), Postives = 52/84 (61.90%), Query Frame = 0
Query:   83 PGPSNARVKED-EGGVIIEVGTTSQSAVKKDTCGEVEEAEDEMEEMFVMGPSGRVEWGGPTRGGRHKEPTRFGDWERKGRCTDF 165
            P P  AR   D     + E       A+  DT  + +E ED+ EEM  +GP+G  EWGGP+RGG++ EPTRFGDWE+KGRC DF
Sbjct:   12 PTPMAARAFSDAPKSFVPEHDKPHARAIIVDTVLDDDEDEDDEEEMVTIGPAG-TEWGGPSRGGKYMEPTRFGDWEKKGRCMDF 94          
BLAST of EWM25379.1 vs. NCBI_GenBank
Match: gi|1173951757|gb|OQR99564.1| (hypothetical protein ACHHYP_05758 [Achlya hypogyna])

HSP 1 Score: 68.1662 bits (165), Expect = 5.144e-12
Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 0
Query:  127 MFVMGPSGRVEWGGPTRGGRHKEPTRFGDWERKGRCTDF 165
            M  +GP+G  EWGGP+RGG++KEPTRFGDWE+KGRC DF
Sbjct:   58 MVTIGPAG-TEWGGPSRGGKYKEPTRFGDWEKKGRCMDF 95          
BLAST of EWM25379.1 vs. NCBI_GenBank
Match: gi|570316277|gb|ETO64225.1| (hypothetical protein F444_18197 [Phytophthora parasitica P1976] >gi|570970329|gb|ETP33448.1| hypothetical protein F442_18014 [Phytophthora parasitica P10297])

HSP 1 Score: 68.5514 bits (166), Expect = 5.204e-12
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 0
Query:  129 VMGPSGRVEWGGPTRGGRHKEPTRFGDWERKGRCTDF 165
            V+GPSG  E+GGPTRGG+ KEPTRFGDWERKGRC+DF
Sbjct:   85 VIGPSG-AEYGGPTRGGKLKEPTRFGDWERKGRCSDF 120          
BLAST of EWM25379.1 vs. NCBI_GenBank
Match: gi|567950016|gb|ETK75736.1| (hypothetical protein L915_17693 [Phytophthora parasitica] >gi|567978691|gb|ETL29178.1| hypothetical protein L916_17581 [Phytophthora parasitica] >gi|570940063|gb|ETP05320.1| hypothetical protein F441_18039 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 68.5514 bits (166), Expect = 5.790e-12
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 0
Query:  129 VMGPSGRVEWGGPTRGGRHKEPTRFGDWERKGRCTDF 165
            V+GPSG  E+GGPTRGG+ KEPTRFGDWERKGRC+DF
Sbjct:   85 VIGPSG-AEYGGPTRGGKLKEPTRFGDWERKGRCSDF 120          
BLAST of EWM25379.1 vs. NCBI_GenBank
Match: gi|698786890|ref|XP_009826477.1| (hypothetical protein H257_03878 [Aphanomyces astaci] >gi|574119305|gb|ETV84785.1| hypothetical protein H257_03878 [Aphanomyces astaci])

HSP 1 Score: 67.3958 bits (163), Expect = 7.026e-12
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 0
Query:  129 VMGPSGRVEWGGPTRGGRHKEPTRFGDWERKGRCTDF 165
            V+GP+G VEWGGP RGG++KEPTRFGDWE+KGRC DF
Sbjct:   55 VIGPAG-VEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 90          
The following BLAST results are available for this feature:
BLAST of EWM25379.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107140|gb|EWM25379.1|4.934e-117100.00Protein of unknown function DUF1674 [Nannochlorops... [more]
gi|298707113|emb|CBJ29905.1|5.104e-1866.13conserved unknown protein [Ectocarpus siliculosus][more]
gi|1214698095|gb|OWZ11198.1|7.355e-1379.49hypothetical protein PHMEG_00015815 [Phytophthora ... [more]
gi|301109291|ref|XP_002903726.1|8.221e-1370.45conserved hypothetical protein [Phytophthora infes... [more]
gi|953499595|emb|CEG39021.1|3.361e-1255.56Uncharacterized conserved protein [Plasmopara hals... [more]
gi|669144896|ref|XP_008608010.1|4.909e-1248.81hypothetical protein SDRG_04129 [Saprolegnia dicli... [more]
gi|1173951757|gb|OQR99564.1|5.144e-1271.79hypothetical protein ACHHYP_05758 [Achlya hypogyna... [more]
gi|570316277|gb|ETO64225.1|5.204e-1281.08hypothetical protein F444_18197 [Phytophthora para... [more]
gi|567950016|gb|ETK75736.1|5.790e-1281.08hypothetical protein L915_17693 [Phytophthora para... [more]
gi|698786890|ref|XP_009826477.1|7.026e-1278.38hypothetical protein H257_03878 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5293rna5293Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications