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Properties
| Property Name | Value |
|---|
| Product | Complex 1 LYR protein |
| Orig transcript id | gnl|cribi|Naga_100005g70.6656.mrna |
| Orig protein id | gnl|cribi|Naga_100005g70.6656 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:605415..606002 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5279 ID=rna5279|Name=rna5279|organism=Nannochloropsis gaditana|type=mRNA|length=6016bp
GGCATGTCTTTTTATCGCCCATCTTGCTCGCTGGTATGTCAGTTGATCTG
GCAAAGAACAAAGCTTTAGAATGATTTATAACCGAGGCAATATTTTTTAA
TGCAGGTTAATCATGTGGTATGACCAGAGCAATCACGGTGATTGCGAAAA
GAAGGACTTCCCTGGAGTTGACGATTTACATGAGTTGTCCCTTTCCGAGG
CGTTGTCAGCTGCAGGAGACCTGCTATCTCATGAAGAGACACGTCTCCCT
GCGGCCTTTGCCTTACTTGAGCGTCTCAAGTTGTCTGCTACCGAAAATGG
CGCTGCTCAAGGAGTGGATAAAATATTGCGATTACTGGGACGCAATTTGG
GTTACCACCCGGCGGTTCTGGAGCAGGTGCTGGAGGCCCTGAGCCTGGGC
GAGAACTCGGGTCCGATCATCGAGGCCCTCCCGCTCCTGGTGGTGGGGGC
AGCGCCCGCAGAGGTGGCCCGGGTGGTGGAAGCGATGAAGTCGGCTTTGC
AGGATGATATGGCAGGACTCTTATTGCCCGTGTTGGGCGCACTTTTCGAT
CTGCCGCTCGGGCCACGCTTGCGGCGCGAGGCCCTGGCCCTGGCCGAGGA
GGCTTTGGCGGTTGTGAAGGACGCAGACGTGCCTGTCATAGTACGGACGC
TATTGCGGAGCTTGGACGACCACAGTGACCCGGCAGTGCTGGGACAGATC
CGTCGTGAGTGTGCCAATTTGAGTCCCCAAGCGATGGCGGTGCTGATGGA
GGTCCTCTCCAGCACGCTGGCAACCAGCCCCCGCGTGGCACGGTTGCTGC
TCATGAGCATCCGATCCTGCGCCGGTGCCAAAAGTGTCCTCCTGGGCAGG
CAGCGCCAAGAGCTTCAGCAGCACATCTCGATCGTGGACGCGTTGACGCT
AGTCTTGCTGCTTCCCCATCCCTCCCACCGGCCAGTGGCTCAGGAAACCT
TGTTGCGCGCTCTGGCCGCCTCTCCGCCGATACAGGCCGAGAGCGGTGGA
CAACGGAGGGGAAGACCAGCTTCTAGAGGTCGCTGTTTGGCATCGCATTT
GTGTGCGATTGTAGAACTGACCGTCGACAAGCTCTGGCAGGCCGTGGCCT
CCACGCTCGCCGAGATGTCTCAGTGGCTGCTGCTGAGCGCGCTGCTCCCG
CCCCCTTGCCCGTCGCCAGGCCTGGAAGCGGGACGCCAGGCTAGAGCTCT
CGCTACTCACCTCTTGCGACGGCTCTTTCAGCTTCATGTCGGACTTCGGG
ACGAGATCCTAGGGTTCCTGATGACGCTGTTCCTGGCGTGTGGGCGCGGG
GTGGCGGCGGGGCTGGAGCTGCCCGGGGGTGCAGGATGTCGTGGTGGGCG
AGGAGGGGGACAAAGGACGAGCGAGCTGCTTGAGCTGATGCGGGCCAGTC
ACTCCATCATCGTGGGTCTTGCTCAAGACTCCTCGCAACTGCTGGTACCG
TACGCGGGCATGCTCTGCGACCAGCTCCTGAACTCTGCATTCGAAATACC
CGTGCCCCTTATGGCGCCCTTGCTTCGCAGCCTCTCCCTCTTGGCGCGCT
CTCACGCAGCATCGGGCATCGAGATTACGCTCTTCATTTACATCCAGAAA
CACTTGTGGACAAACTCCGTGACACATGCTGGGACGGGCGCCCGAGGCGG
CAGCTTGAGACCGCGAGCCCAGAGCAGCGGGCATGGAGACGTCCCTTGGG
TGGTGGACAGCGCGGACAGTGACGACGGGCGAAAGCTCACGAGCCTCATT
CTGGCGGAGGCACTCGTGTCCTTGGAGAAGGGAGCCGCCGGCCAGGGCCA
GGAGGTGCCCGCGGGGTCGGACGACCTCTCTGGAGTCTTGGACTGGGTTG
TCAGCTCCCTTCCCGTCGCGGCCCCGAAGATCGCGGCTTTTGGGCTTCGT
TTCCTCCTCCGCGTGCTGCGAGGAACTAGTAGTAAGAGCCTCGGCGACAG
TGACACGCGCATGAAGGTGCTGAGACGGCAAGTCGAAGATGCGACTCTCA
GTATCGCGTGCCGGTTGGGGATCATACAGCGATCAGAGGACGTGAAGAAT
CTGAATTCGAAGCGGCTTTCATACCTCGTTTCGGACAATCTTGAGGGACT
TTCACTCGGCAACAATGCTTTGCCATGGCGAGCTAAGTTCCTAGGACCTG
CCGCGGCATCTGGGAGCTCGCCCCTCGCGAGGAAAGGCGTGCTAAGCGCG
CTGACCCGCTCAGATCAGGAGACAGATCACGGGAGGGATGAAAGGGGGGT
AGTGACCTGGGCCTGGTGTCTTGAGGGATTGGTAGACGACTTCGTCCCAC
GGATAGCAGCTGCAGAGGCTGTTGGGCTTGGGCAGCTTCTCTTGATACGC
ACCACGGTCGCAGCCCTTTGTGAGCTGCAGCTTCAGGTCTATGCCGGTGC
GAAGGAGAAGACGAGATGCTTCGAGCGCTTGGCTGCCGCGCCCATGCTTT
TGCCCCCCTGGCCTGATGTGGTGGGACGGAGACCAGCAGGGGAGGGCCTG
GAGAGAGAGGAGCCCGTCTTACCTTGGGCGGCAACCGACGAGCAGGAGCC
GGGCTGGGAGGAGGATACGCGGCTGTGGAGGGTGAAGGCGCGCGTCGCGA
CCCGGAGGGGGCGAAGTGGTAGGCGGAGAAAAGCCAAAAAGGCTAAGGTC
TGCTCCACTGATTCTGTAGCTGGGCACCACAGGAGGGACAGCGGAGGAGA
GGAGGAAGAGGAGGGCGATGACGAGGAAGACGTCTTCCGCGACCGCCTCG
GTCGTAGGGACCGGTGGCTACGTGCGGGGTGGGGTGCCCTCTTCGGCCTC
CTGGTCACGGGGGCCCTGATCGAAAGCTGGACGCGGGGACGGAAAGGACA
GGAGGCATGGAGCGAACAGGTTTCGGAATCTGCTCTGCTTGCTTTGCTGC
GCCGGCATGTCGACCTGTTCCAGCGCGTGCGCCGGTGTCTGGAGCGCGTG
TCCCCGACTGCCTGTGGAAATGAGACGCTGCGAGACGTGACTCAGGCGGC
CGCTACGGAGCCTATCCGTGTCACCCGGGGCCGTCAGCAGCTGGAGCGAG
CCATGGCGGCCTACGGCGAGACCGCTTTGGGACCGATCCAGCTTCAAGAC
GAACTGTTGGCGGCGCTCCTGGACTGGACAAGCGATGCCCTGCAGGGAAT
GTGTCATCGGAAGGACATGCTAGAATACGACGGCGAGATGGCTGAAGATT
TTGGCGTCAGTGTAGGCGATGAGAGGCTGGCAGCCTTGTTAGGATGTGTC
CGATGCGTAATGGAGACAGTTATTAACCGAGACGACCTGGCTGTGGCGGT
TGAGGGGGTGAGCTCCCCGGAAGAGAGCGAAGACGGGGGCTGGGACATTC
CTCACGACCACCAACTCGCGCAGCAGCCTCTTCGATTTGACGCATTGAAA
GTGTGCAATGTGCAGCGTATGACATCTCAAATAAGCGCCCTGAACGTGCT
ACTGCGAAAGGTGCGAGTACACTACGGTCTTATTCGAGGAGATGCGGCTG
CCAGTAGAGCTCTTGAACCAGCAGATATCTCGGACTTGTTATGTATGTAC
CTTGGCTATGTCCGTAGTTTGTGCATACATCTTAGAGATCAAGAGCACTG
GGAAGTTAATGCGTGCAGGACTCCTGAGTGCAGGATTAAGAACGAGGTGT
CTGAAACAGCCCCATGTTCCTTGGCGTCCTCGAGCGTTCAAGATAATCAG
AACCAATTGCCTGTTCTTAGCACAGAGAATATGGCGCGTCTCTTTGCACC
AAATCATGATGGAGGTGGCTGTGAGGGGGGGCAGCTCAGCGAAGACGAAT
CGCGTGAGCAAGCTTTTGAGTTCCTGAGAACAGAAATGAGGATAGCTGAG
GATGAAGGTGTGGCTTGTGGTTTGCTTGAACTTTTGGCGTGTTTGACGGC
TGGGACGCGCAAAGCAGGCGTGGCTGCTTGTTTTACAGCATTAACTTGCT
TGGAGACTGCGTATCCGGTGATAAACCCAGATCCTCGCGAAATTCGAGGG
CTAGAAATGGGTCTTGGAAGTATCAGCAGGGGTTGCTCCACGGAGAGCAG
CTTGCCCTTTGCACTCTTGCATTTGCTGCGGCCCCAGCTTGGTCGTCATG
AGGTGCAGACAAGGGTCCTCTTGGATGTTCGCAAGGCTGCTCTAAGCCCA
ACTTCGCCTCTGGCCCATCGGCCCGTGCTGCGTCACTTCTTGTTGACTTT
TTGGAGTCTTCTGCCGCAGGACCGTCGAGCCGCCGGTCTGGTCCGGCTTT
GTGAAGGAATGGAGGCTGTCAACAGGGAGGAAAGCTCTGCTTTGGAGGAG
CTATCGGTTCGTGAGACCGGGGAGCGGCGACGAACGCGCTTCCCGGGCAA
TCAGCATCGCAGTGGTACCGGGCAAATGTCTTCCTCCTCGTATCTAGAAG
AAAGGGAGCTTGCTTTACGAGTCCTGCGTGGTGTCAGTCCCGAGGAGATA
CCTGCCGTGCTTGAACTACTCTTACTCCTGGCACTAGCAACGTTGCTTTT
GGCGCGTCCACAAAGCGCCCCACGATTTCCTCACGAAGGCAGTGAAATGA
TGCCATCGCACAACCCCTATGGGGACGTACGGGCAGCCCTGATGGCTCTC
GGACATGTCATACAGCTTGTAGGGTCGGGTAGAGCGGGAACGATTGAGGG
TGGACGAAGAAGTGTGCGTCTATCGGCGTGTACGGTCAAGACGGCCTGCC
TGGCCCTCGGCGGCCTGCAGTGGCAGATTGAACGCTGCTTGGATTGGCGA
ACTGCGCGAGGGGGGCCGCGGGAGGTAGAGACAGCAGACGAAGCCGCTCA
AGAGCAAGGACGTCAGCAAGAGACGTCCCTGGATCACGTGCAGGCCCTTA
TAGAGGACGGCTTGTCCTTTGTCGCGCTGGTGGCGGATGCTTCCAGAGCG
ATGAAAGAGAAGCAAGACATGGCGCCGGAAAGTAGCAGCGGGCGTTCCAG
TGCCACGAGAAGGCGTAAGCGTGACCGTTGTCCTCTTGACCATCCTGCAG
GAAGAAGGTGGGAAGGTCTGACAGCAAATTCGTTCGACCACCGATTTGTG
GCCCGGTGCGTGCTGGCGTGTGAGAAGTTGGTTGAAGCTCTCCGGGACGT
TGTCACCTTACTGCGGCTGCCGATTAAAATTGAAGGTTTACCAACAATTT
CTGGTCAGTCTTTAAAGAAAACGAGTCGTGCCCAAGGAAAAAAAAGAATT
CCTGAAAGTCACCTGTTCGGCGGTAAAATGAAGCGAAGCATGTTGCAAGA
TTTCGCAGAAGCCGAAAGGGAGAGTGAGGGCAATGATTGCACTGACTCGA
ATGCAACGACTCGATACATGCGGAGTAGGGGTGCGGTGGGTCGTAGAGGG
GAATGGGAGAGGTTGTGCCCGTCATCGGATGACGAGGACGGCTCAGTCGA
ATCTGAAGATGATGAGGAGACGGACGAAATGAAGGAGGACGAGGAGCAAT
TTTATGCCCTAATCTCGGGCTCAAGAGAGGACGGGTGTTGGGCCTACTCC
GACGATGTGTCAGGGTGGGGAGACAGCAGGGCTGAAGACGTGGAAGACGA
GGAAGAAGATGACTCCTCTACTGTCCTTGGACGGAGCCGGCGCAAGGTTT
TCTCTTCCACTTCGAAAGTTGTCGTATGCGGGGGTAGCAGCGCACAAGTG
CGGGGTAGTGAGGACGCTACCCTGGTAGTTCGATTCGAGAGCGGAAAAAA
GTAGAGAACCTGTGAAGACGAATGAGACACAAACCAGAGAGCAATGCTAG
TCTTCTCCATATACAAACCAGGGATTGGGAATCAACTGTATAGAGCATGG
AAGCCTCAGTCTTCAAAATTGTTCGTCCTGAGGGATGAGCGTCACTTTTT
CTTCGCTTTACTCAAAGAATGGGAAGTCCAACACCCTCACTCATGCACTT
TGCTCTTTCCAATTACTTGTTTGGTAAATTCCACGACATGAATGTCTTCA
AGATCGGAGGAAGCGCCTTCGTCTTAAGCGCTCTTCTGGACCTTCTTTTT
CAAACCTCGCTTGCGC back to topprotein sequence of rna5279 >rna5279-protein ID=rna5279-protein|Name=rna5279|organism=Nannochloropsis gaditana|type=polypeptide|length=128bp
MLIALSFSASSRGDMSATPSRQHVLGLFRSLLRQAGRLEDYNFRSYAKRR
VALGFQEGRSSSGEEAAREYRDGVKNLEMLKRQALISHLYPSKRSYGGRR
AVQENHNRGTERPDVVQIYGPTNNQIGW back to topmRNA from alignment at CM002465.1:605415..606002+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5279 ID=rna5279|Name=rna5279|organism=Nannochloropsis gaditana|type=mRNA|length=588bp|location=Sequence derived from alignment at CM002465.1:605415..606002+ (Nannochloropsis gaditana)
ATGCTCAGTTCTGTCATAGACTAACTCGCACATGAGCTCAAGCATGCTCT
TCCTGCTTTCCGCTCCTTTGATATTTATGCCGGAAAGCATTATGCTTCAT
TACATGCAATATGGCTGATCACTCGTCATATATTTCGTTTACCGACCCAC
TTGCACAGTCgcgctttctttttctgcTTCATCCCGCGGTGACATGTCTG
CGACCCCATCACGTCAGCACGTCTTGGGGTTATTTCGCTCTTTGCTTCGA
CAGGCGGGGCGCTTAGAAGATTACAATTTCCGTTCCTACGCAAAGCGTCG
AGTCGCGTTAGGTTTTCAGGAGGGTCGATCTTCGagtggagaagaagcag
cgcGGGAGTACAGGGACGGAGTCAAGAATTTGGAAATGCTCAAGCGACAG
GCCTTGATAAGCCACCTCTACCCGTCGAAACGTTCTGTCATGGAACTTGA
CGTGAAAGCCCCAACTTTAGGATAGAGGATGGGTAGTACGGAGGGCGCAG
GGCCGTGCAAGAAAATCATAATCGAGGAACAGAAAGGCCAGATGTTGTGC
AGATTTACGGGCCAACTAATAACCAGATAGGCTGGTGA back to topCoding sequence (CDS) from alignment at CM002465.1:605415..606002+ >rna5279 ID=rna5279|Name=rna5279|organism=Nannochloropsis gaditana|type=CDS|length=1161bp|location=Sequence derived from alignment at CM002465.1:605415..606002+ (Nannochloropsis gaditana)
ATGCTCATCgcgctttctttttctgcTTCATCCCGCGGTGACATGTCTGC
GACCCCATCACGTCAGCACGTCTTGGGGTTATTTCGCTCTTTGCTTCGAC
AGGCGGGGCGCTTAGAAGATTACAATTTCCGTTCCTACGCAAAGCGTCGA
GTCGCGTTAGGTTTTCAGGAGGGTCGATCTTCGagtggagaagaagcagc
gcGGGAGTACAGGGACGGAGTCAAGAATTTGGAAATGCTCAAGCGACAGG
CCTTGATAAGCCACCTCTACCCGTCGAAACGTTCTTACGGAGGGCGCAGG
GCCGTGCAAGAAAATCATAATCGAGGAACAGAAAGGCCAGATGTTGTGCA
GATTTACGGGCCAACTAATAACCAGATAGGCTGGTGAATGCTCATCgcgc
tttctttttctgcTTCATCCCGCGGTGACATGTCTGCGACCCCATCACGT
CAGCACGTCTTGGGGTTATTTCGCTCTTTGCTTCGACAGGCGGGGCGCTT
AGAAGATTACAATTTCCGTTCCTACGCAAAGCGTCGAGTCGCGTTAGGTT
TTCAGGAGGGTCGATCTTCGagtggagaagaagcagcgcGGGAGTACAGG
GACGGAGTCAAGAATTTGGAAATGCTCAAGCGACAGGCCTTGATAAGCCA
CCTCTACCCGTCGAAACGTTCTTACGGAGGGCGCAGGGCCGTGCAAGAAA
ATCATAATCGAGGAACAGAAAGGCCAGATGTTGTGCAGATTTACGGGCCA
ACTAATAACCAGATAGGCTGGTGAATGCTCATCgcgctttctttttctgc
TTCATCCCGCGGTGACATGTCTGCGACCCCATCACGTCAGCACGTCTTGG
GGTTATTTCGCTCTTTGCTTCGACAGGCGGGGCGCTTAGAAGATTACAAT
TTCCGTTCCTACGCAAAGCGTCGAGTCGCGTTAGGTTTTCAGGAGGGTCG
ATCTTCGagtggagaagaagcagcgcGGGAGTACAGGGACGGAGTCAAGA
ATTTGGAAATGCTCAAGCGACAGGCCTTGATAAGCCACCTCTACCCGTCG
AAACGTTCTTACGGAGGGCGCAGGGCCGTGCAAGAAAATCATAATCGAGG
AACAGAAAGGCCAGATGTTGTGCAGATTTACGGGCCAACTAATAACCAGA
TAGGCTGGTGA back to top
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