EWM25362.1, cds5266 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25362.1 vs. NCBI_GenBank
Match: gi|585107123|gb|EWM25362.1| (Complex 1 LYR protein [Nannochloropsis gaditana]) HSP 1 Score: 262.307 bits (669), Expect = 9.503e-89 Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0
Query: 1 MLIALSFSASSRGDMSATPSRQHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAAREYRDGVKNLEMLKRQALISHLYPSKRSYGGRRAVQENHNRGTERPDVVQIYGPTNNQIGW 128
MLIALSFSASSRGDMSATPSRQHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAAREYRDGVKNLEMLKRQALISHLYPSKRSYGGRRAVQENHNRGTERPDVVQIYGPTNNQIGW
Sbjct: 1 MLIALSFSASSRGDMSATPSRQHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAAREYRDGVKNLEMLKRQALISHLYPSKRSYGGRRAVQENHNRGTERPDVVQIYGPTNNQIGW 128
BLAST of EWM25362.1 vs. NCBI_GenBank
Match: gi|298708943|emb|CBJ30897.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 73.1738 bits (178), Expect = 1.478e-14 Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 0
Query: 17 ATPSRQHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAAREYRDGVKNLEMLKRQALISHLYPSKRS 95
A PSR VLGL++ L RQ L DYN+R YA RR GF+ R + EEA ++ G + LE+++RQA IS LYP + S
Sbjct: 2 AQPSRTAVLGLYKGLRRQGALLMDYNYREYALRRARRGFELARGFAPEEAEAAFKKGQRELEIVRRQAAISQLYPHQTS 80
BLAST of EWM25362.1 vs. NCBI_GenBank
Match: gi|66803460|ref|XP_635573.1| (LYR motif-containing protein 4 [Dictyostelium discoideum AX4] >gi|74851705|sp|Q54FN9.1|LYRM4_DICDI RecName: Full=LYR motif-containing protein 4 >gi|60463900|gb|EAL62068.1| LYR motif-containing protein 4 [Dictyostelium discoideum AX4]) HSP 1 Score: 72.0182 bits (175), Expect = 3.132e-14 Identity = 31/71 (43.66%), Postives = 49/71 (69.01%), Query Frame = 0
Query: 24 VLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAAREYRDGVKNLEMLKRQALISHLYPSKR 94
VL L+RSL+R++ + YNFR Y+ RRV++GF+E ++ E +D +KNLEM+KRQA I+ +Y + +
Sbjct: 7 VLHLYRSLVRESKKFSSYNFREYSLRRVSVGFRENKNKDQNETKELIQDALKNLEMVKRQAFINSMYSTNK 77
BLAST of EWM25362.1 vs. NCBI_GenBank
Match: gi|1160559741|ref|XP_020432422.1| (LYR motif-containing protein 4 [Polysphondylium pallidum PN500] >gi|281206113|gb|EFA80302.1| LYR motif-containing protein 4 [Polysphondylium pallidum PN500]) HSP 1 Score: 71.633 bits (174), Expect = 5.701e-14 Identity = 34/80 (42.50%), Postives = 52/80 (65.00%), Query Frame = 0
Query: 15 MSATPSRQHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAAREYRDGVKNLEMLKRQALISHLYPSKR 94
MS + +RQ VL L+RS+ R+A + YNFR Y+KRR+ALGF+E + ++ ++ + EMLKRQA I+ LY ++
Sbjct: 1 MSQSATRQTVLQLYRSMQREANKFSSYNFREYSKRRIALGFRENKLATPDQTKDLIVQSQNDYEMLKRQATINSLYAHRK 80
BLAST of EWM25362.1 vs. NCBI_GenBank
Match: gi|1021041786|gb|KZM99567.1| (hypothetical protein DCAR_013071 [Daucus carota subsp. sativus]) HSP 1 Score: 76.6406 bits (187), Expect = 8.815e-14 Identity = 46/118 (38.98%), Postives = 64/118 (54.24%), Query Frame = 0
Query: 16 SATPSRQHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAAREYRDGVKNLEMLKRQALISHLYPSKRSYGGRRAVQENHNRGT-----ERPDVVQIYGPTNNQIGW 128
+A+PSR +L LFRSLLR + + DYN R Y+KRR F+ + ++ AA + DG LE+ KRQAL+ LY K G V +N NR ER V ++ P N ++ W
Sbjct: 3 AASPSRPEILSLFRSLLRTSRQFSDYNIREYSKRRTIDAFRLNKHATDPSAA--FADGKSQLEVAKRQALVYSLYAPKTCCGWGNFVTKNLNRSINQAVMERVWVQKVSAP-NIELSW 117
BLAST of EWM25362.1 vs. NCBI_GenBank
Match: gi|1173950247|gb|OQR98224.1| (hypothetical protein ACHHYP_08976 [Achlya hypogyna]) HSP 1 Score: 69.707 bits (169), Expect = 2.920e-13 Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = 0
Query: 22 QHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAAREYRDGVKNLEMLKRQALISHLYPSKRS 95
+ VL L+R+LLR+A + E+Y FRSYA+RR+ F+ +++SG +A G + L +L+RQ IS LYP ++S
Sbjct: 3 KQVLSLYRTLLREAAQYENYTFRSYAQRRIKADFRANKTTSGADAQLAITFGTEQLALLRRQVAISKLYPGEKS 76
BLAST of EWM25362.1 vs. NCBI_GenBank
Match: gi|1028903541|gb|OAL05790.1| (hypothetical protein IQ06DRAFT_373173 [Stagonospora sp. SRC1lsM3a]) HSP 1 Score: 70.4774 bits (171), Expect = 3.271e-13 Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 0
Query: 5 LSFSASSRGDMSATPSRQHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAARE-YRDGVKNLEMLKRQALISHLYPSKR 94
+S S +++GDM V L+RSLLRQ G+ YNFR YAKRR F+E +S +GE+ +E ++G+K L+ LKRQ +IS Y R
Sbjct: 1 MSLSQAAKGDMPY-----QVRSLYRSLLRQGGQFAAYNFREYAKRRTRDAFREHKSETGEQRIQELVQNGLKELQALKRQTVISQFYQLDR 86
BLAST of EWM25362.1 vs. NCBI_GenBank
Match: gi|169594910|ref|XP_001790879.1| (hypothetical protein SNOG_00185 [Parastagonospora nodorum SN15] >gi|160700969|gb|EAT91680.2| hypothetical protein SNOG_00185 [Parastagonospora nodorum SN15]) HSP 1 Score: 69.707 bits (169), Expect = 5.260e-13 Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 0
Query: 5 LSFSASSRGDMSATPSRQHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAARE-YRDGVKNLEMLKRQALISHLYPSKR 94
+S + +++GDM V L+RSLLRQ G+ YNFR YAKRR F+E +S + E +E + G+K L+MLKRQ +IS Y R
Sbjct: 1 MSLTQATKGDMPY-----QVRSLYRSLLRQGGQFAAYNFREYAKRRTRDAFREAKSETEERRVQELMQKGLKELQMLKRQTVISQFYQLDR 86
BLAST of EWM25362.1 vs. NCBI_GenBank
Match: gi|908428943|ref|XP_013075161.1| (PREDICTED: LYR motif-containing protein 4-like [Biomphalaria glabrata]) HSP 1 Score: 69.3218 bits (168), Expect = 5.932e-13 Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = 0
Query: 17 ATPSRQHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSG-EEAAREYRDGVKNLEMLKRQALISHLYPSKR 94
A P+R VL L++ +LR+ ++ DYNFR YA RR F+E ++ + E+ + +KNLEMLKRQA +S LY S +
Sbjct: 8 AAPTRTTVLTLYKQILREGKKVTDYNFRMYALRRTRDAFKENKNVTDLEQMQLLTQKAIKNLEMLKRQATVSQLYGSSK 86
BLAST of EWM25362.1 vs. NCBI_GenBank
Match: gi|1072235489|gb|OEU20218.1| (hypothetical protein FRACYDRAFT_274699 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 68.9366 bits (167), Expect = 6.269e-13 Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 0
Query: 22 QHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAAREYRDGVKNLEMLKRQALISHLYPSKRS 95
Q + LFR+L++QA ++ DYNFR+YA RR+ GF + R G A ++G + L +L RQ++IS LYPS +S
Sbjct: 3 QPQIVLFRNLMKQATQMNDYNFRAYAIRRIRGGFDQNRLLEGNTAQMAIKEGQEQLAVLTRQSVISRLYPSAKS 76 The following BLAST results are available for this feature:
BLAST of EWM25362.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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