EWM25362.1, cds5266 (CDS) Nannochloropsis gaditana

Overview
NameEWM25362.1
Unique Namecds5266
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:605415..605421 +
Alignment locationCM002465.1:605573..605850 +
Alignment locationCM002465.1:605901..606002 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25362.1
ProductComplex 1 LYR protein
Orig transcript idgnl|cribi|Naga_100005g70.6656.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:605415..605421 +
CM002465.1supercontigCM002465.1:605573..605850 +
CM002465.1supercontigCM002465.1:605901..606002 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0016043cellular component organization
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
Homology
BLAST of EWM25362.1 vs. NCBI_GenBank
Match: gi|585107123|gb|EWM25362.1| (Complex 1 LYR protein [Nannochloropsis gaditana])

HSP 1 Score: 262.307 bits (669), Expect = 9.503e-89
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0
Query:    1 MLIALSFSASSRGDMSATPSRQHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAAREYRDGVKNLEMLKRQALISHLYPSKRSYGGRRAVQENHNRGTERPDVVQIYGPTNNQIGW 128
            MLIALSFSASSRGDMSATPSRQHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAAREYRDGVKNLEMLKRQALISHLYPSKRSYGGRRAVQENHNRGTERPDVVQIYGPTNNQIGW
Sbjct:    1 MLIALSFSASSRGDMSATPSRQHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAAREYRDGVKNLEMLKRQALISHLYPSKRSYGGRRAVQENHNRGTERPDVVQIYGPTNNQIGW 128          
BLAST of EWM25362.1 vs. NCBI_GenBank
Match: gi|298708943|emb|CBJ30897.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 73.1738 bits (178), Expect = 1.478e-14
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 0
Query:   17 ATPSRQHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAAREYRDGVKNLEMLKRQALISHLYPSKRS 95
            A PSR  VLGL++ L RQ   L DYN+R YA RR   GF+  R  + EEA   ++ G + LE+++RQA IS LYP + S
Sbjct:    2 AQPSRTAVLGLYKGLRRQGALLMDYNYREYALRRARRGFELARGFAPEEAEAAFKKGQRELEIVRRQAAISQLYPHQTS 80          
BLAST of EWM25362.1 vs. NCBI_GenBank
Match: gi|66803460|ref|XP_635573.1| (LYR motif-containing protein 4 [Dictyostelium discoideum AX4] >gi|74851705|sp|Q54FN9.1|LYRM4_DICDI RecName: Full=LYR motif-containing protein 4 >gi|60463900|gb|EAL62068.1| LYR motif-containing protein 4 [Dictyostelium discoideum AX4])

HSP 1 Score: 72.0182 bits (175), Expect = 3.132e-14
Identity = 31/71 (43.66%), Postives = 49/71 (69.01%), Query Frame = 0
Query:   24 VLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAAREYRDGVKNLEMLKRQALISHLYPSKR 94
            VL L+RSL+R++ +   YNFR Y+ RRV++GF+E ++    E     +D +KNLEM+KRQA I+ +Y + +
Sbjct:    7 VLHLYRSLVRESKKFSSYNFREYSLRRVSVGFRENKNKDQNETKELIQDALKNLEMVKRQAFINSMYSTNK 77          
BLAST of EWM25362.1 vs. NCBI_GenBank
Match: gi|1160559741|ref|XP_020432422.1| (LYR motif-containing protein 4 [Polysphondylium pallidum PN500] >gi|281206113|gb|EFA80302.1| LYR motif-containing protein 4 [Polysphondylium pallidum PN500])

HSP 1 Score: 71.633 bits (174), Expect = 5.701e-14
Identity = 34/80 (42.50%), Postives = 52/80 (65.00%), Query Frame = 0
Query:   15 MSATPSRQHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAAREYRDGVKNLEMLKRQALISHLYPSKR 94
            MS + +RQ VL L+RS+ R+A +   YNFR Y+KRR+ALGF+E + ++ ++          + EMLKRQA I+ LY  ++
Sbjct:    1 MSQSATRQTVLQLYRSMQREANKFSSYNFREYSKRRIALGFRENKLATPDQTKDLIVQSQNDYEMLKRQATINSLYAHRK 80          
BLAST of EWM25362.1 vs. NCBI_GenBank
Match: gi|1021041786|gb|KZM99567.1| (hypothetical protein DCAR_013071 [Daucus carota subsp. sativus])

HSP 1 Score: 76.6406 bits (187), Expect = 8.815e-14
Identity = 46/118 (38.98%), Postives = 64/118 (54.24%), Query Frame = 0
Query:   16 SATPSRQHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAAREYRDGVKNLEMLKRQALISHLYPSKRSYGGRRAVQENHNRGT-----ERPDVVQIYGPTNNQIGW 128
            +A+PSR  +L LFRSLLR + +  DYN R Y+KRR    F+  + ++   AA  + DG   LE+ KRQAL+  LY  K   G    V +N NR       ER  V ++  P N ++ W
Sbjct:    3 AASPSRPEILSLFRSLLRTSRQFSDYNIREYSKRRTIDAFRLNKHATDPSAA--FADGKSQLEVAKRQALVYSLYAPKTCCGWGNFVTKNLNRSINQAVMERVWVQKVSAP-NIELSW 117          
BLAST of EWM25362.1 vs. NCBI_GenBank
Match: gi|1173950247|gb|OQR98224.1| (hypothetical protein ACHHYP_08976 [Achlya hypogyna])

HSP 1 Score: 69.707 bits (169), Expect = 2.920e-13
Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = 0
Query:   22 QHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAAREYRDGVKNLEMLKRQALISHLYPSKRS 95
            + VL L+R+LLR+A + E+Y FRSYA+RR+   F+  +++SG +A      G + L +L+RQ  IS LYP ++S
Sbjct:    3 KQVLSLYRTLLREAAQYENYTFRSYAQRRIKADFRANKTTSGADAQLAITFGTEQLALLRRQVAISKLYPGEKS 76          
BLAST of EWM25362.1 vs. NCBI_GenBank
Match: gi|1028903541|gb|OAL05790.1| (hypothetical protein IQ06DRAFT_373173 [Stagonospora sp. SRC1lsM3a])

HSP 1 Score: 70.4774 bits (171), Expect = 3.271e-13
Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 0
Query:    5 LSFSASSRGDMSATPSRQHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAARE-YRDGVKNLEMLKRQALISHLYPSKR 94
            +S S +++GDM        V  L+RSLLRQ G+   YNFR YAKRR    F+E +S +GE+  +E  ++G+K L+ LKRQ +IS  Y   R
Sbjct:    1 MSLSQAAKGDMPY-----QVRSLYRSLLRQGGQFAAYNFREYAKRRTRDAFREHKSETGEQRIQELVQNGLKELQALKRQTVISQFYQLDR 86          
BLAST of EWM25362.1 vs. NCBI_GenBank
Match: gi|169594910|ref|XP_001790879.1| (hypothetical protein SNOG_00185 [Parastagonospora nodorum SN15] >gi|160700969|gb|EAT91680.2| hypothetical protein SNOG_00185 [Parastagonospora nodorum SN15])

HSP 1 Score: 69.707 bits (169), Expect = 5.260e-13
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 0
Query:    5 LSFSASSRGDMSATPSRQHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAARE-YRDGVKNLEMLKRQALISHLYPSKR 94
            +S + +++GDM        V  L+RSLLRQ G+   YNFR YAKRR    F+E +S + E   +E  + G+K L+MLKRQ +IS  Y   R
Sbjct:    1 MSLTQATKGDMPY-----QVRSLYRSLLRQGGQFAAYNFREYAKRRTRDAFREAKSETEERRVQELMQKGLKELQMLKRQTVISQFYQLDR 86          
BLAST of EWM25362.1 vs. NCBI_GenBank
Match: gi|908428943|ref|XP_013075161.1| (PREDICTED: LYR motif-containing protein 4-like [Biomphalaria glabrata])

HSP 1 Score: 69.3218 bits (168), Expect = 5.932e-13
Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = 0
Query:   17 ATPSRQHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSG-EEAAREYRDGVKNLEMLKRQALISHLYPSKR 94
            A P+R  VL L++ +LR+  ++ DYNFR YA RR    F+E ++ +  E+     +  +KNLEMLKRQA +S LY S +
Sbjct:    8 AAPTRTTVLTLYKQILREGKKVTDYNFRMYALRRTRDAFKENKNVTDLEQMQLLTQKAIKNLEMLKRQATVSQLYGSSK 86          
BLAST of EWM25362.1 vs. NCBI_GenBank
Match: gi|1072235489|gb|OEU20218.1| (hypothetical protein FRACYDRAFT_274699 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 68.9366 bits (167), Expect = 6.269e-13
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 0
Query:   22 QHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAAREYRDGVKNLEMLKRQALISHLYPSKRS 95
            Q  + LFR+L++QA ++ DYNFR+YA RR+  GF + R   G  A    ++G + L +L RQ++IS LYPS +S
Sbjct:    3 QPQIVLFRNLMKQATQMNDYNFRAYAIRRIRGGFDQNRLLEGNTAQMAIKEGQEQLAVLTRQSVISRLYPSAKS 76          
The following BLAST results are available for this feature:
BLAST of EWM25362.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107123|gb|EWM25362.1|9.503e-89100.00Complex 1 LYR protein [Nannochloropsis gaditana][more]
gi|298708943|emb|CBJ30897.1|1.478e-1448.10conserved unknown protein [Ectocarpus siliculosus][more]
gi|66803460|ref|XP_635573.1|3.132e-1443.66LYR motif-containing protein 4 [Dictyostelium disc... [more]
gi|1160559741|ref|XP_020432422.1|5.701e-1442.50LYR motif-containing protein 4 [Polysphondylium pa... [more]
gi|1021041786|gb|KZM99567.1|8.815e-1438.98hypothetical protein DCAR_013071 [Daucus carota su... [more]
gi|1173950247|gb|OQR98224.1|2.920e-1343.24hypothetical protein ACHHYP_08976 [Achlya hypogyna... [more]
gi|1028903541|gb|OAL05790.1|3.271e-1343.96hypothetical protein IQ06DRAFT_373173 [Stagonospor... [more]
gi|169594910|ref|XP_001790879.1|5.260e-1342.86hypothetical protein SNOG_00185 [Parastagonospora ... [more]
gi|908428943|ref|XP_013075161.1|5.932e-1343.04PREDICTED: LYR motif-containing protein 4-like [Bi... [more]
gi|1072235489|gb|OEU20218.1|6.269e-1344.59hypothetical protein FRACYDRAFT_274699 [Fragilario... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5279rna5279Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications